Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:45:01 (14627): wrapper (7.7.26015): starting
15:45:01 (14627): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:45:01] Arguments: --nthreads 8
[2025-06-04 15:45:01] Threads: 8
[2025-06-04 15:45:01] Checking for CVMFS
[2025-06-04 15:45:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:45:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:45:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:45:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:45:03] 2.11.2.0 17186 33451 103272 146781 2 59 18636666 25165825 3523 130560 0 17873833 99.856 19003988 2065 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 15:45:03] CVMFS is ok
[2025-06-04 15:45:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:45:03] Checking for apptainer binary...
[2025-06-04 15:45:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:45:03] Running /usr/bin/apptainer --version
[2025-06-04 15:45:03] apptainer version 1.3.2-1.el7
[2025-06-04 15:45:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:45:15] cg-vwn311.simple-grid.lan
[2025-06-04 15:45:15] apptainer works
[2025-06-04 15:45:15] Set ATHENA_PROC_NUMBER=8
[2025-06-04 15:45:15] Set ATHENA_CORE_NUMBER=8
[2025-06-04 15:45:15] Starting ATLAS job with PandaID=6678214407
[2025-06-04 15:45:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 19:50:01]  *** The last 200 lines of the pilot log: ***
[2025-06-04 19:50:01] 2025-06-04 17:40:31,846 | INFO     | extracted standard info from prmon json
[2025-06-04 19:50:01] 2025-06-04 17:40:31,846 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 19:50:01] 2025-06-04 17:40:31,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 19:50:01] 2025-06-04 17:40:31,846 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 19:50:01] 2025-06-04 17:40:31,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 19:50:01] 2025-06-04 17:40:31,851 | INFO     | fitting pss+swap vs Time
[2025-06-04 19:50:01] 2025-06-04 17:40:31,852 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,854 | INFO     | sum of deviations: 51317545945.00001
[2025-06-04 19:50:01] 2025-06-04 17:40:31,854 | INFO     | mean x: 1749052052.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,854 | INFO     | mean y: 2442857.616438356
[2025-06-04 19:50:01] 2025-06-04 17:40:31,854 | INFO     | -- intersect: -27556775821.99371
[2025-06-04 19:50:01] 2025-06-04 17:40:31,855 | INFO     | intersect: -27556775821.99371
[2025-06-04 19:50:01] 2025-06-04 17:40:31,860 | INFO     | chi2: 6.605557276959278
[2025-06-04 19:50:01] 2025-06-04 17:40:31,861 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 19:50:01] 2025-06-04 17:40:31,863 | INFO     | sum of deviations: 64523363355.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,863 | INFO     | mean x: 1749051899.5
[2025-06-04 19:50:01] 2025-06-04 17:40:31,863 | INFO     | mean y: 2451908.1028037383
[2025-06-04 19:50:01] 2025-06-04 17:40:31,863 | INFO     | -- intersect: -37134771749.93012
[2025-06-04 19:50:01] 2025-06-04 17:40:31,863 | INFO     | intersect: -37134771749.93012
[2025-06-04 19:50:01] 2025-06-04 17:40:31,864 | INFO     | chi2: 5.901352498127515
[2025-06-04 19:50:01] 2025-06-04 17:40:31,864 | INFO     | current chi2=5.901352498127515 (change=10.660792864336914 %)
[2025-06-04 19:50:01] 2025-06-04 17:40:31,864 | INFO     | right removable region: 213
[2025-06-04 19:50:01] 2025-06-04 17:40:31,865 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 19:50:01] 2025-06-04 17:40:31,866 | INFO     | sum of deviations: -24536299498.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,866 | INFO     | mean x: 1749052204.5
[2025-06-04 19:50:01] 2025-06-04 17:40:31,867 | INFO     | mean y: 2495867.9813084113
[2025-06-04 19:50:01] 2025-06-04 17:40:31,867 | INFO     | -- intersect: 14124670437.234837
[2025-06-04 19:50:01] 2025-06-04 17:40:31,867 | INFO     | intersect: 14124670437.234837
[2025-06-04 19:50:01] 2025-06-04 17:40:31,867 | INFO     | chi2: 1.7822624174280801
[2025-06-04 19:50:01] 2025-06-04 17:40:31,867 | INFO     | current chi2=1.7822624174280801 (change=73.01874251178236 %)
[2025-06-04 19:50:01] 2025-06-04 17:40:31,868 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,869 | INFO     | sum of deviations: -49980281131.00003
[2025-06-04 19:50:01] 2025-06-04 17:40:31,869 | INFO     | mean x: 1749052357.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,870 | INFO     | mean y: 2514351.4019138757
[2025-06-04 19:50:01] 2025-06-04 17:40:31,870 | INFO     | -- intersect: 30883714127.205055
[2025-06-04 19:50:01] 2025-06-04 17:40:31,870 | INFO     | intersect: 30883714127.205055
[2025-06-04 19:50:01] 2025-06-04 17:40:31,870 | INFO     | chi2: 0.9893393434148275
[2025-06-04 19:50:01] 2025-06-04 17:40:31,870 | INFO     | current chi2=0.9893393434148275 (change=44.48969277809785 %)
[2025-06-04 19:50:01] 2025-06-04 17:40:31,871 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,873 | INFO     | sum of deviations: -47597445085.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,873 | INFO     | mean x: 1749052509.5
[2025-06-04 19:50:01] 2025-06-04 17:40:31,873 | INFO     | mean y: 2512476.8235294116
[2025-06-04 19:50:01] 2025-06-04 17:40:31,873 | INFO     | -- intersect: 31627327869.517323
[2025-06-04 19:50:01] 2025-06-04 17:40:31,873 | INFO     | intersect: 31627327869.517323
[2025-06-04 19:50:01] 2025-06-04 17:40:31,874 | INFO     | chi2: 0.9743535534165022
[2025-06-04 19:50:01] 2025-06-04 17:40:31,874 | INFO     | current chi2=0.9743535534165022 (change=1.5147269840295672 %)
[2025-06-04 19:50:01] 2025-06-04 17:40:31,874 | INFO     | left removable region: 30
[2025-06-04 19:50:01] 2025-06-04 17:40:31,874 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,876 | INFO     | sum of deviations: -11216781504.000004
[2025-06-04 19:50:01] 2025-06-04 17:40:31,876 | INFO     | mean x: 1749052784.0
[2025-06-04 19:50:01] 2025-06-04 17:40:31,876 | INFO     | mean y: 2504385.8524590163
[2025-06-04 19:50:01] 2025-06-04 17:40:31,876 | INFO     | -- intersect: 10326610306.348656
[2025-06-04 19:50:01] 2025-06-04 17:40:31,876 | INFO     | intersect: 10326610306.348656
[2025-06-04 19:50:01] 2025-06-04 17:40:31,877 | INFO     | chi2: 0.10324761361252163
[2025-06-04 19:50:01] 2025-06-04 17:40:31,877 | INFO     | -- intersect: 10326610306.348656
[2025-06-04 19:50:01] 2025-06-04 17:40:31,877 | INFO     | current memory leak: -5.90 B/s (using 183 data points, chi2=0.10)
[2025-06-04 19:50:01] 2025-06-04 17:40:31,878 | INFO     | ..............................
[2025-06-04 19:50:01] 2025-06-04 17:40:31,878 | INFO     | . Timing measurements:
[2025-06-04 19:50:01] 2025-06-04 17:40:31,878 | INFO     | . get job = 0 s
[2025-06-04 19:50:01] 2025-06-04 17:40:31,879 | INFO     | . initial setup = 5 s
[2025-06-04 19:50:01] 2025-06-04 17:40:31,879 | INFO     | . payload setup = 167 s
[2025-06-04 19:50:01] 2025-06-04 17:40:31,879 | INFO     | . stage-in = 0 s
[2025-06-04 19:50:01] 2025-06-04 17:40:31,879 | INFO     | . payload execution = 13487 s
[2025-06-04 19:50:01] 2025-06-04 17:40:31,879 | INFO     | . stage-out = 5 s
[2025-06-04 19:50:01] 2025-06-04 17:40:31,879 | INFO     | . log creation = 1 s
[2025-06-04 19:50:01] 2025-06-04 17:40:31,879 | INFO     | ..............................
[2025-06-04 19:50:01] 2025-06-04 17:40:32,014 | INFO     | 
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | job summary report
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | --------------------------------------------------
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | PanDA job id: 6678214407
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | task id: 45006595
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | errors: (none)
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | pilot state: finished 
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | transexitcode: 0
[2025-06-04 19:50:01] 2025-06-04 17:40:32,015 | INFO     | exeerrorcode: 0
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | exeerrordiag: 
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | exitcode: 0
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | exitmsg: OK
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | cpuconsumptiontime: 50332 s
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | nevents: 400
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | neventsw: 0
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | pid: 2991
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | pgrp: 2991
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | corecount: 8
[2025-06-04 19:50:01] 2025-06-04 17:40:32,016 | INFO     | event service: False
[2025-06-04 19:50:01] 2025-06-04 17:40:32,017 | INFO     | sizes: {0: 2397115, 1: 2397370, 12: 2397370, 23: 2397398, 34: 2397426, 44: 2397454, 55: 2397610, 66: 2397638, 77: 2397666, 87: 2397722, 96: 2397956, 98: 2398264, 1
[2025-06-04 19:50:01] 2025-06-04 17:40:32,017 | INFO     | --------------------------------------------------
[2025-06-04 19:50:01] 2025-06-04 17:40:32,017 | INFO     | 
[2025-06-04 19:50:01] 2025-06-04 17:40:32,017 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-06-04 19:50:01] 2025-06-04 17:40:32,428 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,428 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,428 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,428 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,428 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,429 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | job 6678214407 has completed (purged errors)
[2025-06-04 19:50:01] 2025-06-04 17:40:32,430 | INFO     | overall cleanup function is called
[2025-06-04 19:50:01] 2025-06-04 17:40:33,440 | INFO     | --- collectZombieJob: --- 10, [2991]
[2025-06-04 19:50:01] 2025-06-04 17:40:33,440 | INFO     | zombie collector waiting for pid 2991
[2025-06-04 19:50:01] 2025-06-04 17:40:33,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 19:50:01] 2025-06-04 17:40:33,440 | INFO     | collected zombie processes
[2025-06-04 19:50:01] 2025-06-04 17:40:33,441 | INFO     | will attempt to kill all subprocesses of pid=2991
[2025-06-04 19:50:01] 2025-06-04 17:40:33,599 | INFO     | process IDs to be killed: [2991] (in reverse order)
[2025-06-04 19:50:01] 2025-06-04 17:40:34,167 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 19:50:01] 2025-06-04 17:40:34,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 19:50:01] 2025-06-04 17:40:34,171 | INFO     | did not find any defunct processes belonging to 2991
[2025-06-04 19:50:01] 2025-06-04 17:40:34,174 | INFO     | did not find any defunct processes belonging to 2991
[2025-06-04 19:50:01] 2025-06-04 17:40:34,174 | INFO     | ready for new job
[2025-06-04 19:50:01] 2025-06-04 17:40:34,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 19:50:01] 2025-06-04 17:40:34,176 | INFO     | **************************************
[2025-06-04 19:50:01] 2025-06-04 17:40:34,176 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 19:50:01] 2025-06-04 17:40:34,176 | INFO     | **************************************
[2025-06-04 19:50:01] 2025-06-04 17:40:34,176 | INFO     | 
[2025-06-04 19:50:01] 2025-06-04 17:40:34,177 | INFO     | pilot is running in a VM
[2025-06-04 19:50:01] 2025-06-04 17:40:34,177 | INFO     | architecture information:
[2025-06-04 19:50:01] 2025-06-04 17:40:34,185 | INFO     | executing command: cat /etc/os-release
[2025-06-04 19:50:01] 2025-06-04 17:40:34,323 | INFO     | cat /etc/os-release:
[2025-06-04 19:50:01] NAME="CentOS Linux"
[2025-06-04 19:50:01] VERSION="7 (Core)"
[2025-06-04 19:50:01] ID="centos"
[2025-06-04 19:50:01] ID_LIKE="rhel fedora"
[2025-06-04 19:50:01] VERSION_ID="7"
[2025-06-04 19:50:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 19:50:01] ANSI_COLOR="0;31"
[2025-06-04 19:50:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 19:50:01] HOME_URL="https://www.centos.org/"
[2025-06-04 19:50:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 19:50:01] 
[2025-06-04 19:50:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 19:50:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 19:50:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 19:50:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 19:50:01] 
[2025-06-04 19:50:01] 2025-06-04 17:40:34,324 | INFO     | **************************************
[2025-06-04 19:50:01] 2025-06-04 17:40:34,827 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-06-04 19:50:01] 2025-06-04 17:40:34,974 | INFO     | sufficient remaining disk space (496576233472 B)
[2025-06-04 19:50:01] 2025-06-04 17:40:34,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 19:50:01] 2025-06-04 17:40:34,974 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 19:50:01] 2025-06-04 17:40:34,974 | INFO     | update_server=False
[2025-06-04 19:50:01] 2025-06-04 17:40:34,975 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 19:50:01] 2025-06-04 17:40:34,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 19:50:01] 2025-06-04 17:40:34,981 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 19:50:01] 2025-06-04 17:40:34,982 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 19:50:01] 2025-06-04 17:40:34,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 19:50:01] 2025-06-04 17:40:34,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 19:50:01] 2025-06-04 17:40:35,253 | INFO     | all job control threads have been joined
[2025-06-04 19:50:01] 2025-06-04 17:40:35,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:50:01] 2025-06-04 17:40:35,424 | INFO     | aborting loop
[2025-06-04 19:50:01] 2025-06-04 17:40:35,525 | INFO     | all data control threads have been joined
[2025-06-04 19:50:01] 2025-06-04 17:40:35,664 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 19:50:01] 2025-06-04 17:40:35,980 | INFO     | [job] retrieve thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,041 | INFO     | [data] copytool_in thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,078 | INFO     | all payload control threads have been joined
[2025-06-04 19:50:01] 2025-06-04 17:40:36,169 | INFO     | [job] validate thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,259 | INFO     | [job] control thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,286 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,430 | INFO     | [job] job monitor thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,531 | INFO     | [data] control thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,639 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,958 | INFO     | [payload] failed_post thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:36,982 | INFO     | [data] copytool_out thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:37,001 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:37,035 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 19:50:01] 2025-06-04 17:40:37,084 | INFO     | [payload] control thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:37,232 | INFO     | [payload] validate_post thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:37,459 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:38,041 | INFO     | [job] queue monitor thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:39,673 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 19:50:01] 2025-06-04 17:40:41,199 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140367877441344)>', '<ExcThread(monitor, started 140367424898816)>']
[2025-06-04 19:50:01] 2025-06-04 17:40:42,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 19:50:01] 2025-06-04 17:40:42,023 | INFO     | [monitor] control thread has ended
[2025-06-04 19:50:01] 2025-06-04 17:40:46,225 | INFO     | all workflow threads have been joined
[2025-06-04 19:50:01] 2025-06-04 17:40:46,225 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 19:50:01] 2025-06-04 17:40:46,226 | INFO     | traces error code: 0
[2025-06-04 19:50:01] 2025-06-04 17:40:46,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 19:50:01] 2025-06-04 17:40:46,489 [wrapper] ==== pilot stdout END ====
[2025-06-04 19:50:01] 2025-06-04 17:40:46,578 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 19:50:01] 2025-06-04 17:40:46,693 [wrapper] pilotpid: 28793
[2025-06-04 19:50:01] 2025-06-04 17:40:46,809 [wrapper] Pilot exit status: 0
[2025-06-04 19:50:01] 2025-06-04 17:40:47,290 [wrapper] pandaids: 6678214407
[2025-06-04 19:50:01] 2025-06-04 17:40:48,136 [wrapper] cleanup supervisor_pilot 11861 28794
[2025-06-04 19:50:01] 2025-06-04 17:40:48,202 [wrapper] Test setup, not cleaning
[2025-06-04 19:50:01] 2025-06-04 17:40:48,292 [wrapper] apfmon messages muted
[2025-06-04 19:50:01] 2025-06-04 17:40:48,374 [wrapper] ==== wrapper stdout END ====
[2025-06-04 19:50:01] 2025-06-04 17:40:48,492 [wrapper] ==== wrapper stderr END ====
[2025-06-04 19:50:01]  *** Error codes and diagnostics ***
[2025-06-04 19:50:01]     "exeErrorCode": 0,
[2025-06-04 19:50:01]     "exeErrorDiag": "",
[2025-06-04 19:50:01]     "pilotErrorCode": 0,
[2025-06-04 19:50:01]     "pilotErrorDiag": "",
[2025-06-04 19:50:01]  *** Listing of results directory ***
[2025-06-04 19:50:01] total 390732
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:58 pilot3.tar.gz
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc      5111 Jun  4 02:36 queuedata.json
[2025-06-04 19:50:01] -rwx------. 1 boinc boinc     37140 Jun  4 02:36 runpilot2-wrapper.sh
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc       100 Jun  4 15:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 19:50:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 15:45 run_atlas
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc       105 Jun  4 15:45 job.xml
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc      6390 Jun  4 15:45 init_data.xml
[2025-06-04 19:50:01] -rw-r--r--. 2 boinc boinc 214570365 Jun  4 15:45 EVNT.45006593._001962.pool.root.1
[2025-06-04 19:50:01] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:45 start_atlas.sh
[2025-06-04 19:50:01] drwxrwx--x. 2 boinc boinc        68 Jun  4 15:45 shared
[2025-06-04 19:50:01] -rw-r--r--. 2 boinc boinc    508880 Jun  4 15:45 input.tar.gz
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc         0 Jun  4 15:45 boinc_lockfile
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc      2525 Jun  4 15:45 pandaJob.out
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc    986819 Jun  4 15:48 agis_schedconf.cvmfs.json
[2025-06-04 19:50:01] drwx------. 4 boinc boinc      4096 Jun  4 15:48 pilot3
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc 178584628 Jun  4 19:37 HITS.45006595._048922.pool.root.1
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc       530 Jun  4 19:37 boinc_task_state.xml
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc      1015 Jun  4 19:38 memory_monitor_summary.json
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc   1598969 Jun  4 19:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc    389456 Jun  4 19:39 log.45006595._048922.job.log.tgz.1
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc        95 Jun  4 19:39 pilot_heartbeat.json
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc      7689 Jun  4 19:40 heartbeat.json
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc      4539 Jun  4 19:40 pilotlog.txt
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc   1179562 Jun  4 19:40 log.45006595._048922.job.log.1
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc       357 Jun  4 19:40 output.list
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc       620 Jun  4 19:40 runtime_log
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc   1587200 Jun  4 19:40 result.tar.gz
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc      8659 Jun  4 19:40 runtime_log.err
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc       656 Jun  4 19:40 IpfLDmcIrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmfMaKDmvbbjVn.diag
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc      8192 Jun  4 19:50 boinc_mmap_file
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc        28 Jun  4 19:50 wrapper_checkpoint.txt
[2025-06-04 19:50:01] -rw-r--r--. 1 boinc boinc     20507 Jun  4 19:50 stderr.txt
[2025-06-04 19:50:01] HITS file was successfully produced:
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc 178584628 Jun  4 19:37 shared/HITS.pool.root.1
[2025-06-04 19:50:01]  *** Contents of shared directory: ***
[2025-06-04 19:50:01] total 386012
[2025-06-04 19:50:01] -rw-r--r--. 2 boinc boinc 214570365 Jun  4 15:45 ATLAS.root_0
[2025-06-04 19:50:01] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:45 start_atlas.sh
[2025-06-04 19:50:01] -rw-r--r--. 2 boinc boinc    508880 Jun  4 15:45 input.tar.gz
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc 178584628 Jun  4 19:37 HITS.pool.root.1
[2025-06-04 19:50:01] -rw-------. 1 boinc boinc   1587200 Jun  4 19:40 result.tar.gz
19:50:03 (14627): run_atlas exited; CPU time 50525.794625
19:50:03 (14627): called boinc_finish(0)

</stderr_txt>
]]>

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