Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 11:58:49 (18864): Detected: vboxwrapper 26206
2025-06-04 11:58:49 (18864): Detected: BOINC client v8.0.2
2025-06-04 11:58:50 (18864): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-04 11:58:50 (18864): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 11:58:50 (18864): Create VM. (boinc_29f6a89656d7e1eb, slot#0)
2025-06-04 11:58:51 (18864): Setting Memory Size for VM. (4800MB)
2025-06-04 11:58:51 (18864): Setting CPU Count for VM. (8)
2025-06-04 11:58:51 (18864): Setting Chipset Options for VM.
2025-06-04 11:58:52 (18864): Setting Graphics Controller Options for VM.
2025-06-04 11:58:52 (18864): Setting Boot Options for VM.
2025-06-04 11:58:52 (18864): Setting Network Configuration for NAT.
2025-06-04 11:58:52 (18864): Enabling VM Network Access.
2025-06-04 11:58:53 (18864): Disabling USB Support for VM.
2025-06-04 11:58:53 (18864): Disabling COM Port Support for VM.
2025-06-04 11:58:53 (18864): Disabling LPT Port Support for VM.
2025-06-04 11:58:54 (18864): Disabling Audio Support for VM.
2025-06-04 11:58:54 (18864): Disabling Clipboard Support for VM.
2025-06-04 11:58:54 (18864): Disabling Drag and Drop Support for VM.
2025-06-04 11:58:54 (18864): Adding storage controller(s) to VM.
2025-06-04 11:58:55 (18864): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 11:58:57 (18864): Adding VirtualBox Guest Additions to VM.
2025-06-04 11:58:58 (18864): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 11:58:58 (18864): forwarding host port 55616 to guest port 80
2025-06-04 11:58:58 (18864): Enabling remote desktop for VM.
2025-06-04 11:58:58 (18864): Required extension pack not installed, remote desktop not enabled.
2025-06-04 11:58:58 (18864): Enabling shared directory for VM.
2025-06-04 11:58:59 (18864): Starting VM using VBoxManage interface. (boinc_29f6a89656d7e1eb, slot#0)
2025-06-04 11:59:05 (18864): Successfully started VM. (PID = '19780')
2025-06-04 11:59:05 (18864): Reporting VM Process ID to BOINC.
2025-06-04 11:59:05 (18864): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-04 11:59:05 (18864): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 11:59:05 (18864): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 11:59:05 (18864): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 11:59:05 (18864): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 11:59:05 (18864): Detected: Web Application Enabled (http://localhost:55616)
2025-06-04 11:59:05 (18864): Preference change detected
2025-06-04 11:59:05 (18864): Setting CPU throttle for VM. (100%)
2025-06-04 11:59:06 (18864): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 11:59:07 (18864): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 11:59:07 (18864): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 11:59:09 (18864): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 11:59:09 (18864): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 11:59:09 (18864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 11:59:14 (18864): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 11:59:14 (18864): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 11:59:19 (18864): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.000351 main     Log opened 2025-06-04T11:59:16.867260000Z
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.000449 main     OS Product: Linux
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.000490 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.000516 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.000538 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.000539 main     Process ID: 1364
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.000539 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 11:59:19 (18864): Guest Log: 00:00:00.001253 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 11:59:19 (18864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 11:59:19 (18864): Guest Log: [INFO] Mounting shared directory
2025-06-04 11:59:19 (18864): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 11:59:29 (18864): Guest Log: 00:00:10.004391 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 944 382 000ns (GuestNow=1 749 034 768 925 965 000 ns GuestLast=1 749 038 356 870 347 000 ns fSetTimeLastLoop=true )
2025-06-04 11:59:50 (18864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 11:59:50 (18864): Guest Log: [INFO] Detected branch: prod
2025-06-04 11:59:52 (18864): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 11:59:52 (18864): Guest Log: Copying input files
2025-06-04 11:59:53 (18864): Guest Log: Copied input files into RunAtlas.
2025-06-04 11:59:53 (18864): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 11:59:53 (18864): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 11:59:53 (18864): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 11:59:53 (18864): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 12:00:21 (18864): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 12:00:24 (18864): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 12:00:24 (18864): Guest Log: 2.6.3.0 1652 0 30204 146777 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 12:00:24 (18864): Guest Log: copied the webapp to /var/www
2025-06-04 12:00:24 (18864): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 12:00:24 (18864): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 12:00:27 (18864): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 12:00:27 (18864): Guest Log:  *** Starting ATLAS job. (PandaID=6678218473 taskID=45006595) ***
2025-06-04 12:39:28 (18864): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 13:39:22 (18864): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 13:39:23 (18864): Guest Log: 00:40:10.542374 timesync vgsvcTimeSyncWorker: Radical host time change: 3 603 514 000 000ns (HostNow=1 749 040 762 951 000 000 ns HostLast=1 749 037 159 437 000 000 ns)
2025-06-04 13:39:33 (18864): Guest Log: 00:40:20.542684 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 603 487 965 000ns (GuestNow=1 749 040 772 951 458 000 ns GuestLast=1 749 037 169 463 493 000 ns fSetTimeLastLoop=true )
2025-06-04 14:14:11 (18864): Guest Log:  *** Job finished ***
2025-06-04 14:14:11 (18864): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:13:58,259 | INFO     | [data] queue_monitor thread has finished
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:01,709 | INFO     | job.realtimelogging is not enabled
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:02,710 | INFO     | [payload] run_realtimelog thread has finished
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:03,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139973710878528)>', '<ExcThread(monitor, started 139972514412288)>']
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:03,791 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:03,791 | INFO     | [monitor] control thread has ended
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,332 | INFO     | all workflow threads have been joined
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,332 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,333 | INFO     | traces error code: 0
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,407 [wrapper] ==== pilot stdout END ====
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,412 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,418 [wrapper] pilotpid: 6021
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,423 [wrapper] Pilot exit status: 0
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,503 [wrapper] pandaids: 6678218473
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,539 [wrapper] cleanup supervisor_pilot  1022 6022
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,546 [wrapper] Test setup, not cleaning
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,551 [wrapper] apfmon messages muted
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,555 [wrapper] ==== wrapper stdout END ====
2025-06-04 14:14:11 (18864): Guest Log: 2025-06-04 13:14:08,559 [wrapper] ==== wrapper stderr END ====
2025-06-04 14:14:11 (18864): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 14:14:11 (18864): Guest Log:     "exeErrorCode": 0,
2025-06-04 14:14:11 (18864): Guest Log:     "exeErrorDiag": "",
2025-06-04 14:14:11 (18864): Guest Log:     "pilotErrorCode": 0,
2025-06-04 14:14:11 (18864): Guest Log:     "pilotErrorDiag": "",
2025-06-04 14:14:11 (18864): Guest Log:  *** Listing of results directory ***
2025-06-04 14:14:11 (18864): Guest Log: total 174764
2025-06-04 14:14:11 (18864): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 23:58 pilot3.tar.gz
2025-06-04 14:14:11 (18864): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 00:46 runpilot2-wrapper.sh
2025-06-04 14:14:11 (18864): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 00:46 queuedata.json
2025-06-04 14:14:11 (18864): Guest Log: -rwxr-xr-x. 1 atlas atlas      9131 Jun  4 10:59 init_data.xml
2025-06-04 14:14:11 (18864): Guest Log: -rwxr-xr-x. 1 atlas atlas    508883 Jun  4 10:59 input.tar.gz
2025-06-04 14:14:11 (18864): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 10:59 start_atlas.sh
2025-06-04 14:14:11 (18864): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 10:59 EVNT.45006593._001977.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 14:14:11 (18864): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  4 11:00 pandaJob.out
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas    986812 Jun  4 11:02 agis_schedconf.cvmfs.json
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 11:02 agis_ddmendpoints.agis.ALL.json
2025-06-04 14:14:11 (18864): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 11:02 pilot3
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas 173865543 Jun  4 13:12 HITS.45006595._049285.pool.root.1
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas      1034 Jun  4 13:12 memory_monitor_summary.json
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas    286287 Jun  4 13:12 log.45006595._049285.job.log.tgz.1
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas        97 Jun  4 13:13 pilot_heartbeat.json
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas      7727 Jun  4 13:13 heartbeat.json
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas      4485 Jun  4 13:14 pilotlog.txt
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas    376319 Jun  4 13:14 log.45006595._049285.job.log.1
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 13:14 output.list
2025-06-04 14:14:11 (18864): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 13:14 runtime_log
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas    686080 Jun  4 13:14 result.tar.gz
2025-06-04 14:14:11 (18864): Guest Log: -rw-r--r--. 1 atlas atlas      8583 Jun  4 13:14 runtime_log.err
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas       650 Jun  4 13:14 nBNMDmWSrg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdgmKDm8f7Xvm.diag
2025-06-04 14:14:11 (18864): Guest Log: Looking for outputfile HITS.45006595._049285.pool.root.1
2025-06-04 14:14:11 (18864): Guest Log: HITS file was successfully produced
2025-06-04 14:14:11 (18864): Guest Log: -rw-------. 1 atlas atlas 173865543 Jun  4 13:12 /home/atlas/RunAtlas/HITS.45006595._049285.pool.root.1
2025-06-04 14:14:11 (18864): Guest Log: Successfully finished the ATLAS job!
2025-06-04 14:14:11 (18864): Guest Log: Copying the results back to the shared directory!
2025-06-04 14:14:11 (18864): Guest Log:  *** Contents of shared directory: ***
2025-06-04 14:14:11 (18864): Guest Log: total 382096
2025-06-04 14:14:11 (18864): Guest Log: -rwxrwxrwx. 1 root root 216167819 Jun  4 10:58 ATLAS.root_0
2025-06-04 14:14:11 (18864): Guest Log: -rwxrwxrwx. 1 root root 173865543 Jun  4 13:14 HITS.pool.root.1
2025-06-04 14:14:11 (18864): Guest Log: -rwxrwxrwx. 1 root root      9131 Jun  4 10:58 init_data.xml
2025-06-04 14:14:11 (18864): Guest Log: -rwxrwxrwx. 1 root root    508883 Jun  4 05:31 input.tar.gz
2025-06-04 14:14:11 (18864): Guest Log: -rwxrwxrwx. 1 root root    686080 Jun  4 13:14 result.tar.gz
2025-06-04 14:14:11 (18864): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 05:31 start_atlas.sh
2025-06-04 14:14:11 (18864): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 14:14:11 (18864): VM Completion File Detected.
2025-06-04 14:14:11 (18864): Powering off VM.
2025-06-04 14:14:11 (18864): Successfully stopped VM.
2025-06-04 14:14:11 (18864): Deregistering VM. (boinc_29f6a89656d7e1eb, slot#0)
2025-06-04 14:14:11 (18864): Removing network bandwidth throttle group from VM.
2025-06-04 14:14:11 (18864): Removing VM from VirtualBox.
14:14:17 (18864): called boinc_finish(0)

</stderr_txt>
]]>

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