Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:21:46 (311741): wrapper (7.7.26015): starting
01:21:46 (311741): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 01:21:46] Arguments: --nthreads 8
[2025-06-04 01:21:46] Threads: 8
[2025-06-04 01:21:46] Checking for CVMFS
[2025-06-04 01:21:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:21:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:21:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:21:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:21:46] 2.11.2.0 7041 28356 214000 146769 3 194 13683343 18432000 12733 130560 0 115659203 99.587 94116930 30844 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 01:21:46] CVMFS is ok
[2025-06-04 01:21:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 01:21:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 01:21:46] Further information can be found at the LHC@home message board.
[2025-06-04 01:21:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:21:46] Checking for apptainer binary...
[2025-06-04 01:21:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:21:46] Running /usr/bin/apptainer --version
[2025-06-04 01:21:46] apptainer version 1.3.2-1.el7
[2025-06-04 01:21:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:21:47] c-211-33-2.aglt2.org
[2025-06-04 01:21:47] apptainer works
[2025-06-04 01:21:47] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:21:47] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:21:47] Starting ATLAS job with PandaID=6678286479
[2025-06-04 01:21:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 02:48:55]  *** The last 200 lines of the pilot log: ***
[2025-06-04 02:48:55]  lfn=log.45006595._051407.job.log.tgz.1
[2025-06-04 02:48:55]  mtime=0
[2025-06-04 02:48:55]  protocol_id=None
[2025-06-04 02:48:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 02:48:55]  replicas=None
[2025-06-04 02:48:55]  scope=mc23_13p6TeV
[2025-06-04 02:48:55]  status=None
[2025-06-04 02:48:55]  status_code=0
[2025-06-04 02:48:55]  storage_token=
[2025-06-04 02:48:55]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678286479/log.45006595._051407.job.log.tgz.1
[2025-06-04 02:48:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/53/log.45006595._051407.job.log.tgz.1
[2025-06-04 02:48:55]  workdir=None
[2025-06-04 02:48:55] ]
[2025-06-04 02:48:55] 2025-06-04 06:48:28,383 | INFO     | transferring file log.45006595._051407.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678286479/log.45006595._051407.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 02:48:55] 2025-06-04 06:48:28,383 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678286479/log.45006595._051407.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._051407.job
[2025-06-04 02:48:55] 2025-06-04 06:48:28,399 | INFO     | adding to output.list: log.45006595._051407.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/53/log.45006595._051407.job.log.tg
[2025-06-04 02:48:55] 2025-06-04 06:48:28,400 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 02:48:55] 2025-06-04 06:48:28,400 | INFO     | summary of transferred files:
[2025-06-04 02:48:55] 2025-06-04 06:48:28,400 | INFO     |  -- lfn=log.45006595._051407.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 02:48:55] 2025-06-04 06:48:28,400 | INFO     | stage-out finished correctly
[2025-06-04 02:48:55] 2025-06-04 06:48:29,158 | INFO     | monitor loop #386: job 0:6678286479 is in state 'finished'
[2025-06-04 02:48:55] 2025-06-04 06:48:29,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 02:48:55] 2025-06-04 06:48:30,964 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 02:48:55] 2025-06-04 06:48:31,051 | INFO     | job 6678286479 has state=finished
[2025-06-04 02:48:55] 2025-06-04 06:48:31,052 | INFO     | preparing for final server update for job 6678286479 in state='finished'
[2025-06-04 02:48:55] 2025-06-04 06:48:31,052 | INFO     | this job has now completed (state=finished)
[2025-06-04 02:48:55] 2025-06-04 06:48:31,052 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 02:48:55] 2025-06-04 06:48:31,052 | INFO     | log transfer has been attempted: DONE
[2025-06-04 02:48:55] 2025-06-04 06:48:31,052 | INFO     | job 6678286479 has finished - writing final server update
[2025-06-04 02:48:55] 2025-06-04 06:48:31,053 | INFO     | total number of processed events: 400 (read)
[2025-06-04 02:48:55] 2025-06-04 06:48:31,057 | INFO     | executing command: lscpu
[2025-06-04 02:48:55] 2025-06-04 06:48:31,112 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 02:48:55] 2025-06-04 06:48:31,661 | INFO     | monitor loop #387: job 0:6678286479 is in state 'finished'
[2025-06-04 02:48:55] 2025-06-04 06:48:31,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 02:48:55] 2025-06-04 06:48:34,163 | INFO     | monitor loop #388: job 0:6678286479 is in state 'finished'
[2025-06-04 02:48:55] 2025-06-04 06:48:34,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 02:48:55] 2025-06-04 06:48:34,326 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 02:48:55] 2025-06-04 06:48:34,327 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678286479/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 02:48:55] 2025-06-04 06:48:34,327 | INFO     | extracted standard info from prmon json
[2025-06-04 02:48:55] 2025-06-04 06:48:34,327 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 02:48:55] 2025-06-04 06:48:34,327 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 02:48:55] 2025-06-04 06:48:34,327 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 02:48:55] 2025-06-04 06:48:34,327 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | fitting pss+swap vs Time
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | sum of square deviations: 147126479.5
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | sum of deviations: -5560319701.999998
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | mean x: 1749017202.5
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | mean y: 2546834.717948718
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | -- intersect: 66102781430.47384
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | intersect: 66102781430.47384
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | chi2: 0.020816336806328165
[2025-06-04 02:48:55] 2025-06-04 06:48:34,329 | INFO     | -- intersect: 66102781430.47384
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | current memory leak: -37.79 B/s (using 78 data points, chi2=0.02)
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | ..............................
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . Timing measurements:
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . get job = 0 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . initial setup = 2 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . payload setup = 7 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . stage-in = 0 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . payload execution = 5160 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . stage-out = 0 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | . log creation = 0 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,330 | INFO     | ..............................
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | 
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | job summary report
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | --------------------------------------------------
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | PanDA job id: 6678286479
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | task id: 45006595
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | errors: (none)
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | pilot state: finished 
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | transexitcode: 0
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | exeerrorcode: 0
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | exeerrordiag: 
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | exitcode: 0
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | exitmsg: OK
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | cpuconsumptiontime: 34804 s
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | nevents: 400
[2025-06-04 02:48:55] 2025-06-04 06:48:34,382 | INFO     | neventsw: 0
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | pid: 321947
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | pgrp: 321947
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | corecount: 8
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | event service: False
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | sizes: {0: 2405182, 5: 2405388, 11: 2405444, 5172: 2431755, 5173: 2440696, 5175: 2440752, 5179: 2441050}
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | --------------------------------------------------
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | 
[2025-06-04 02:48:55] 2025-06-04 06:48:34,383 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 02:48:55] 2025-06-04 06:48:34,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,402 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,402 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,402 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | job 6678286479 has completed (purged errors)
[2025-06-04 02:48:55] 2025-06-04 06:48:34,403 | INFO     | overall cleanup function is called
[2025-06-04 02:48:55] 2025-06-04 06:48:35,410 | INFO     | --- collectZombieJob: --- 10, [321947]
[2025-06-04 02:48:55] 2025-06-04 06:48:35,411 | INFO     | zombie collector waiting for pid 321947
[2025-06-04 02:48:55] 2025-06-04 06:48:35,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 02:48:55] 2025-06-04 06:48:35,411 | INFO     | collected zombie processes
[2025-06-04 02:48:55] 2025-06-04 06:48:35,411 | INFO     | will attempt to kill all subprocesses of pid=321947
[2025-06-04 02:48:55] 2025-06-04 06:48:35,708 | INFO     | process IDs to be killed: [321947] (in reverse order)
[2025-06-04 02:48:55] 2025-06-04 06:48:35,810 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 02:48:55] 2025-06-04 06:48:35,811 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 02:48:55] 2025-06-04 06:48:35,820 | INFO     | did not find any defunct processes belonging to 321947
[2025-06-04 02:48:55] 2025-06-04 06:48:35,829 | INFO     | did not find any defunct processes belonging to 321947
[2025-06-04 02:48:55] 2025-06-04 06:48:35,829 | INFO     | ready for new job
[2025-06-04 02:48:55] 2025-06-04 06:48:35,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 02:48:55] 2025-06-04 06:48:35,831 | INFO     | **************************************
[2025-06-04 02:48:55] 2025-06-04 06:48:35,831 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 02:48:55] 2025-06-04 06:48:35,831 | INFO     | **************************************
[2025-06-04 02:48:55] 2025-06-04 06:48:35,831 | INFO     | 
[2025-06-04 02:48:55] 2025-06-04 06:48:35,836 | INFO     | architecture information:
[2025-06-04 02:48:55] 2025-06-04 06:48:35,836 | INFO     | executing command: cat /etc/os-release
[2025-06-04 02:48:55] 2025-06-04 06:48:35,855 | INFO     | cat /etc/os-release:
[2025-06-04 02:48:55] NAME="CentOS Linux"
[2025-06-04 02:48:55] VERSION="7 (Core)"
[2025-06-04 02:48:55] ID="centos"
[2025-06-04 02:48:55] ID_LIKE="rhel fedora"
[2025-06-04 02:48:55] VERSION_ID="7"
[2025-06-04 02:48:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 02:48:55] ANSI_COLOR="0;31"
[2025-06-04 02:48:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 02:48:55] HOME_URL="https://www.centos.org/"
[2025-06-04 02:48:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 02:48:55] 
[2025-06-04 02:48:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 02:48:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 02:48:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 02:48:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 02:48:55] 
[2025-06-04 02:48:55] 2025-06-04 06:48:35,855 | INFO     | **************************************
[2025-06-04 02:48:55] 2025-06-04 06:48:36,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 02:48:55] 2025-06-04 06:48:36,386 | INFO     | sufficient remaining disk space (103834189824 B)
[2025-06-04 02:48:55] 2025-06-04 06:48:36,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 02:48:55] 2025-06-04 06:48:36,387 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 02:48:55] 2025-06-04 06:48:36,387 | INFO     | update_server=False
[2025-06-04 02:48:55] 2025-06-04 06:48:36,387 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 02:48:55] 2025-06-04 06:48:36,464 | INFO     | PID=315317 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 02:48:55] 2025-06-04 06:48:36,465 | INFO     | .. there are 18 such processes running
[2025-06-04 02:48:55] 2025-06-04 06:48:36,465 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 02:48:55] 2025-06-04 06:48:36,465 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 02:48:55] 2025-06-04 06:48:36,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 02:48:55] 2025-06-04 06:48:36,478 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 02:48:55] 2025-06-04 06:48:36,530 | INFO     | all job control threads have been joined
[2025-06-04 02:48:55] 2025-06-04 06:48:36,667 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 02:48:55] 2025-06-04 06:48:36,667 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 02:48:55] 2025-06-04 06:48:36,667 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:48:55] 2025-06-04 06:48:36,667 | INFO     | will abort loop
[2025-06-04 02:48:55] 2025-06-04 06:48:36,758 | INFO     | all payload control threads have been joined
[2025-06-04 02:48:55] 2025-06-04 06:48:37,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 02:48:55] 2025-06-04 06:48:37,392 | INFO     | [job] retrieve thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:37,473 | INFO     | all data control threads have been joined
[2025-06-04 02:48:55] 2025-06-04 06:48:37,535 | INFO     | [job] control thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:37,625 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:37,672 | INFO     | [job] job monitor thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:37,762 | INFO     | [payload] control thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:37,862 | INFO     | [payload] failed_post thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:37,915 | INFO     | [job] validate thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:38,113 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:38,344 | INFO     | [payload] validate_post thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:38,392 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:38,442 | INFO     | [data] copytool_in thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:38,474 | INFO     | [data] control thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:38,483 | INFO     | [data] copytool_out thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:39,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:48:55] 2025-06-04 06:48:40,397 | INFO     | [job] queue monitor thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:41,061 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:46,746 | INFO     | job.realtimelogging is not enabled
[2025-06-04 02:48:55] 2025-06-04 06:48:47,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 02:48:55] 2025-06-04 06:48:49,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238754707264)>', '<ExcThread(monitor, started 140238324229888)>']
[2025-06-04 02:48:55] 2025-06-04 06:48:50,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 02:48:55] 2025-06-04 06:48:50,538 | INFO     | [monitor] control thread has ended
[2025-06-04 02:48:55] 2025-06-04 06:48:54,780 | INFO     | all workflow threads have been joined
[2025-06-04 02:48:55] 2025-06-04 06:48:54,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 02:48:55] 2025-06-04 06:48:54,780 | INFO     | traces error code: 0
[2025-06-04 02:48:55] 2025-06-04 06:48:54,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 02:48:55] 2025-06-04 06:48:54,889 [wrapper] ==== pilot stdout END ====
[2025-06-04 02:48:55] 2025-06-04 06:48:54,891 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 02:48:55] 2025-06-04 06:48:54,893 [wrapper] pilotpid: 315317
[2025-06-04 02:48:55] 2025-06-04 06:48:54,896 [wrapper] Pilot exit status: 0
[2025-06-04 02:48:55] 2025-06-04 06:48:54,903 [wrapper] pandaids: 6678286479
[2025-06-04 02:48:55] 2025-06-04 06:48:54,955 [wrapper] cleanup supervisor_pilot 190148 315318
[2025-06-04 02:48:55] 2025-06-04 06:48:54,958 [wrapper] Test setup, not cleaning
[2025-06-04 02:48:55] 2025-06-04 06:48:54,960 [wrapper] apfmon messages muted
[2025-06-04 02:48:55] 2025-06-04 06:48:54,962 [wrapper] ==== wrapper stdout END ====
[2025-06-04 02:48:55] 2025-06-04 06:48:54,964 [wrapper] ==== wrapper stderr END ====
[2025-06-04 02:48:55]  *** Error codes and diagnostics ***
[2025-06-04 02:48:55]     "exeErrorCode": 0,
[2025-06-04 02:48:55]     "exeErrorDiag": "",
[2025-06-04 02:48:55]     "pilotErrorCode": 0,
[2025-06-04 02:48:55]     "pilotErrorDiag": "",
[2025-06-04 02:48:55]  *** Listing of results directory ***
[2025-06-04 02:48:55] total 392412
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 22:52 pilot3.tar.gz
[2025-06-04 02:48:55] -rwx------ 1 boincer umatlas     37140 Jun  3 23:16 runpilot2-wrapper.sh
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 23:16 queuedata.json
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas       100 Jun  4 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 02:48:55] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 01:21 run_atlas
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas       105 Jun  4 01:21 job.xml
[2025-06-04 02:48:55] -rw-r--r-- 2 boincer umatlas 217472743 Jun  4 01:21 EVNT.45006593._002060.pool.root.1
[2025-06-04 02:48:55] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 01:21 start_atlas.sh
[2025-06-04 02:48:55] drwxrwx--x 2 boincer umatlas      4096 Jun  4 01:21 shared
[2025-06-04 02:48:55] -rw-r--r-- 2 boincer umatlas    508877 Jun  4 01:21 input.tar.gz
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas         0 Jun  4 01:21 boinc_lockfile
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas      2524 Jun  4 01:21 pandaJob.out
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas    986745 Jun  4 01:21 agis_schedconf.cvmfs.json
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas   1603667 Jun  4 01:21 agis_ddmendpoints.agis.ALL.json
[2025-06-04 02:48:55] drwx------ 4 boincer umatlas      4096 Jun  4 01:22 pilot3
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas      6298 Jun  4 02:45 init_data.xml
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas 178923210 Jun  4 02:47 HITS.45006595._051407.pool.root.1
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas       529 Jun  4 02:48 boinc_task_state.xml
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas      1049 Jun  4 02:48 memory_monitor_summary.json
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas    297147 Jun  4 02:48 log.45006595._051407.job.log.tgz.1
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas        95 Jun  4 02:48 pilot_heartbeat.json
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas      7741 Jun  4 02:48 heartbeat.json
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas        27 Jun  4 02:48 wrapper_checkpoint.txt
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 02:48 boinc_mmap_file
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas      5006 Jun  4 02:48 pilotlog.txt
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas    504463 Jun  4 02:48 log.45006595._051407.job.log.1
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas       357 Jun  4 02:48 output.list
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas       620 Jun  4 02:48 runtime_log
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas    819200 Jun  4 02:48 result.tar.gz
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 02:48 runtime_log.err
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas       659 Jun  4 02:48 3xPKDmRntg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk2mKDmu8d5Im.diag
[2025-06-04 02:48:55] -rw-r--r-- 1 boincer umatlas     21605 Jun  4 02:48 stderr.txt
[2025-06-04 02:48:55] HITS file was successfully produced:
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas 178923210 Jun  4 02:47 shared/HITS.pool.root.1
[2025-06-04 02:48:55]  *** Contents of shared directory: ***
[2025-06-04 02:48:55] total 388428
[2025-06-04 02:48:55] -rw-r--r-- 2 boincer umatlas 217472743 Jun  4 01:21 ATLAS.root_0
[2025-06-04 02:48:55] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 01:21 start_atlas.sh
[2025-06-04 02:48:55] -rw-r--r-- 2 boincer umatlas    508877 Jun  4 01:21 input.tar.gz
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas 178923210 Jun  4 02:47 HITS.pool.root.1
[2025-06-04 02:48:55] -rw------- 1 boincer umatlas    819200 Jun  4 02:48 result.tar.gz
02:48:56 (311741): run_atlas exited; CPU time 34946.666110
02:49:00 (311741): called boinc_finish(0)

</stderr_txt>
]]>

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