Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:44:04 (13840): wrapper (7.7.26015): starting
15:44:04 (13840): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:44:04] Arguments: --nthreads 8
[2025-06-04 15:44:04] Threads: 8
[2025-06-04 15:44:04] Checking for CVMFS
[2025-06-04 15:44:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:44:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:44:05] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:44:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:44:06] 2.11.2.0 23942 33280 101236 146781 0 16 25126858 25165824 3911 130560 0 18285313 99.849 17631126 1862 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 15:44:06] CVMFS is ok
[2025-06-04 15:44:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:44:06] Checking for apptainer binary...
[2025-06-04 15:44:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:44:06] Running /usr/bin/apptainer --version
[2025-06-04 15:44:06] apptainer version 1.3.2-1.el7
[2025-06-04 15:44:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:14:41] cg-vwn380.simple-grid.lan
[2025-06-04 16:14:41] apptainer works
[2025-06-04 16:14:41] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:14:41] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:14:41] Starting ATLAS job with PandaID=6678215881
[2025-06-04 16:14:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:18:45]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:18:45] 2025-06-04 18:00:37,562 | INFO     | extracted standard info from prmon json
[2025-06-04 20:18:45] 2025-06-04 18:00:37,562 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:18:45] 2025-06-04 18:00:37,562 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:18:45] 2025-06-04 18:00:37,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:18:45] 2025-06-04 18:00:37,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:18:45] 2025-06-04 18:00:37,567 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:18:45] 2025-06-04 18:00:37,568 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,570 | INFO     | sum of deviations: 78557074046.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,570 | INFO     | mean x: 1749053542.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,570 | INFO     | mean y: 2412979.837320574
[2025-06-04 20:18:45] 2025-06-04 18:00:37,570 | INFO     | -- intersect: -48535496093.83013
[2025-06-04 20:18:45] 2025-06-04 18:00:37,570 | INFO     | intersect: -48535496093.83013
[2025-06-04 20:18:45] 2025-06-04 18:00:37,576 | INFO     | chi2: 5.3461161284095216
[2025-06-04 20:18:45] 2025-06-04 18:00:37,577 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,578 | INFO     | sum of deviations: 90240206558.50002
[2025-06-04 20:18:45] 2025-06-04 18:00:37,579 | INFO     | mean x: 1749053389.5
[2025-06-04 20:18:45] 2025-06-04 18:00:37,579 | INFO     | mean y: 2421756.338235294
[2025-06-04 20:18:45] 2025-06-04 18:00:37,579 | INFO     | -- intersect: -59955235722.143105
[2025-06-04 20:18:45] 2025-06-04 18:00:37,579 | INFO     | intersect: -59955235722.143105
[2025-06-04 20:18:45] 2025-06-04 18:00:37,579 | INFO     | chi2: 4.605964217061783
[2025-06-04 20:18:45] 2025-06-04 18:00:37,580 | INFO     | current chi2=4.605964217061783 (change=13.844665801674887 %)
[2025-06-04 20:18:45] 2025-06-04 18:00:37,580 | INFO     | right removable region: 203
[2025-06-04 20:18:45] 2025-06-04 18:00:37,580 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,582 | INFO     | sum of deviations: 11110570652.500004
[2025-06-04 20:18:45] 2025-06-04 18:00:37,582 | INFO     | mean x: 1749053694.5
[2025-06-04 20:18:45] 2025-06-04 18:00:37,582 | INFO     | mean y: 2464738.8578431373
[2025-06-04 20:18:45] 2025-06-04 18:00:37,582 | INFO     | -- intersect: -7379653843.803826
[2025-06-04 20:18:45] 2025-06-04 18:00:37,582 | INFO     | intersect: -7379653843.803826
[2025-06-04 20:18:45] 2025-06-04 18:00:37,583 | INFO     | chi2: 1.1451105606024066
[2025-06-04 20:18:45] 2025-06-04 18:00:37,593 | INFO     | current chi2=1.1451105606024066 (change=78.58051465591566 %)
[2025-06-04 20:18:45] 2025-06-04 18:00:37,594 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,595 | INFO     | sum of deviations: -3496099649.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,596 | INFO     | mean x: 1749053847.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,596 | INFO     | mean y: 2476392.1909547737
[2025-06-04 20:18:45] 2025-06-04 18:00:37,596 | INFO     | -- intersect: 2504896934.544559
[2025-06-04 20:18:45] 2025-06-04 18:00:37,596 | INFO     | intersect: 2504896934.544559
[2025-06-04 20:18:45] 2025-06-04 18:00:37,596 | INFO     | chi2: 0.805323526460703
[2025-06-04 20:18:45] 2025-06-04 18:00:37,596 | INFO     | current chi2=0.805323526460703 (change=29.67285831011394 %)
[2025-06-04 20:18:45] 2025-06-04 18:00:37,597 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 20:18:45] 2025-06-04 18:00:37,598 | INFO     | sum of deviations: -5683915858.5
[2025-06-04 20:18:45] 2025-06-04 18:00:37,599 | INFO     | mean x: 1749053999.5
[2025-06-04 20:18:45] 2025-06-04 18:00:37,599 | INFO     | mean y: 2478243.4896907215
[2025-06-04 20:18:45] 2025-06-04 18:00:37,599 | INFO     | -- intersect: 4393633412.058897
[2025-06-04 20:18:45] 2025-06-04 18:00:37,599 | INFO     | intersect: 4393633412.058897
[2025-06-04 20:18:45] 2025-06-04 18:00:37,599 | INFO     | chi2: 0.80192996590685
[2025-06-04 20:18:45] 2025-06-04 18:00:37,599 | INFO     | current chi2=0.80192996590685 (change=0.4213909618122507 %)
[2025-06-04 20:18:45] 2025-06-04 18:00:37,600 | INFO     | left removable region: 30
[2025-06-04 20:18:45] 2025-06-04 18:00:37,600 | INFO     | sum of square deviations: 1605470102.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,601 | INFO     | sum of deviations: 4127130375.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,601 | INFO     | mean x: 1749054274.0
[2025-06-04 20:18:45] 2025-06-04 18:00:37,601 | INFO     | mean y: 2492320.7167630056
[2025-06-04 20:18:45] 2025-06-04 18:00:37,602 | INFO     | -- intersect: -4493745268.981419
[2025-06-04 20:18:45] 2025-06-04 18:00:37,602 | INFO     | intersect: -4493745268.981419
[2025-06-04 20:18:45] 2025-06-04 18:00:37,602 | INFO     | chi2: 0.0012280879380740367
[2025-06-04 20:18:45] 2025-06-04 18:00:37,602 | INFO     | -- intersect: -4493745268.981419
[2025-06-04 20:18:45] 2025-06-04 18:00:37,602 | INFO     | current memory leak: 2.57 B/s (using 173 data points, chi2=0.00)
[2025-06-04 20:18:45] 2025-06-04 18:00:37,603 | INFO     | ..............................
[2025-06-04 20:18:45] 2025-06-04 18:00:37,603 | INFO     | . Timing measurements:
[2025-06-04 20:18:45] 2025-06-04 18:00:37,603 | INFO     | . get job = 0 s
[2025-06-04 20:18:45] 2025-06-04 18:00:37,603 | INFO     | . initial setup = 9 s
[2025-06-04 20:18:45] 2025-06-04 18:00:37,604 | INFO     | . payload setup = 165 s
[2025-06-04 20:18:45] 2025-06-04 18:00:37,604 | INFO     | . stage-in = 0 s
[2025-06-04 20:18:45] 2025-06-04 18:00:37,604 | INFO     | . payload execution = 12887 s
[2025-06-04 20:18:45] 2025-06-04 18:00:37,604 | INFO     | . stage-out = 7 s
[2025-06-04 20:18:45] 2025-06-04 18:00:37,604 | INFO     | . log creation = 1 s
[2025-06-04 20:18:45] 2025-06-04 18:00:37,604 | INFO     | ..............................
[2025-06-04 20:18:45] 2025-06-04 18:00:38,269 | INFO     | 
[2025-06-04 20:18:45] 2025-06-04 18:00:38,269 | INFO     | job summary report
[2025-06-04 20:18:45] 2025-06-04 18:00:38,269 | INFO     | --------------------------------------------------
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | PanDA job id: 6678215881
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | task id: 45006595
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | errors: (none)
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | pilot state: finished 
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | transexitcode: 0
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | exeerrorcode: 0
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | exeerrordiag: 
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | exitcode: 0
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | exitmsg: OK
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | cpuconsumptiontime: 48354 s
[2025-06-04 20:18:45] 2025-06-04 18:00:38,270 | INFO     | nevents: 400
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | neventsw: 0
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | pid: 9119
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | pgrp: 9119
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | corecount: 8
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | event service: False
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | sizes: {0: 2396514, 1: 2397199, 2: 2397398, 13: 2397398, 23: 2397454, 34: 2397482, 45: 2397638, 56: 2397666, 66: 2397694, 77: 2397722, 88: 2397778, 93: 2398292, 98
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | --------------------------------------------------
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | 
[2025-06-04 20:18:45] 2025-06-04 18:00:38,271 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-06-04 20:18:45] 2025-06-04 18:00:38,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:18:45] 2025-06-04 18:00:38,755 | INFO     | job 6678215881 has completed (purged errors)
[2025-06-04 20:18:45] 2025-06-04 18:00:38,756 | INFO     | overall cleanup function is called
[2025-06-04 20:18:45] 2025-06-04 18:00:39,765 | INFO     | --- collectZombieJob: --- 10, [9119]
[2025-06-04 20:18:45] 2025-06-04 18:00:39,765 | INFO     | zombie collector waiting for pid 9119
[2025-06-04 20:18:45] 2025-06-04 18:00:39,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:18:45] 2025-06-04 18:00:39,766 | INFO     | collected zombie processes
[2025-06-04 20:18:45] 2025-06-04 18:00:39,766 | INFO     | will attempt to kill all subprocesses of pid=9119
[2025-06-04 20:18:45] 2025-06-04 18:00:39,898 | INFO     | process IDs to be killed: [9119] (in reverse order)
[2025-06-04 20:18:45] 2025-06-04 18:00:40,822 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:18:45] 2025-06-04 18:00:40,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:18:45] 2025-06-04 18:00:40,826 | INFO     | did not find any defunct processes belonging to 9119
[2025-06-04 20:18:45] 2025-06-04 18:00:40,829 | INFO     | did not find any defunct processes belonging to 9119
[2025-06-04 20:18:45] 2025-06-04 18:00:40,829 | INFO     | ready for new job
[2025-06-04 20:18:45] 2025-06-04 18:00:40,830 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:18:45] 2025-06-04 18:00:40,832 | INFO     | **************************************
[2025-06-04 20:18:45] 2025-06-04 18:00:40,832 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:18:45] 2025-06-04 18:00:40,832 | INFO     | **************************************
[2025-06-04 20:18:45] 2025-06-04 18:00:40,832 | INFO     | 
[2025-06-04 20:18:45] 2025-06-04 18:00:40,833 | INFO     | pilot is running in a VM
[2025-06-04 20:18:45] 2025-06-04 18:00:40,833 | INFO     | architecture information:
[2025-06-04 20:18:45] 2025-06-04 18:00:40,839 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:18:45] 2025-06-04 18:00:40,994 | INFO     | cat /etc/os-release:
[2025-06-04 20:18:45] NAME="CentOS Linux"
[2025-06-04 20:18:45] VERSION="7 (Core)"
[2025-06-04 20:18:45] ID="centos"
[2025-06-04 20:18:45] ID_LIKE="rhel fedora"
[2025-06-04 20:18:45] VERSION_ID="7"
[2025-06-04 20:18:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:18:45] ANSI_COLOR="0;31"
[2025-06-04 20:18:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:18:45] HOME_URL="https://www.centos.org/"
[2025-06-04 20:18:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:18:45] 
[2025-06-04 20:18:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:18:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:18:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:18:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:18:45] 
[2025-06-04 20:18:45] 2025-06-04 18:00:40,995 | INFO     | **************************************
[2025-06-04 20:18:45] 2025-06-04 18:00:41,498 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-06-04 20:18:45] 2025-06-04 18:00:41,796 | INFO     | sufficient remaining disk space (496334012416 B)
[2025-06-04 20:18:45] 2025-06-04 18:00:41,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:18:45] 2025-06-04 18:00:41,796 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:18:45] 2025-06-04 18:00:41,796 | INFO     | update_server=False
[2025-06-04 20:18:45] 2025-06-04 18:00:41,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:18:45] 2025-06-04 18:00:41,797 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:18:45] 2025-06-04 18:00:41,803 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:18:45] 2025-06-04 18:00:41,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:18:45] 2025-06-04 18:00:41,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:18:45] 2025-06-04 18:00:41,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:18:45] 2025-06-04 18:00:41,805 | INFO     | aborting loop
[2025-06-04 20:18:45] 2025-06-04 18:00:41,904 | INFO     | all payload control threads have been joined
[2025-06-04 20:18:45] 2025-06-04 18:00:42,240 | INFO     | all data control threads have been joined
[2025-06-04 20:18:45] 2025-06-04 18:00:42,411 | INFO     | all job control threads have been joined
[2025-06-04 20:18:45] 2025-06-04 18:00:42,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:18:45] 2025-06-04 18:00:42,802 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:42,811 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:42,827 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:18:45] 2025-06-04 18:00:42,910 | INFO     | [payload] control thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,062 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,176 | INFO     | [job] validate thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,246 | INFO     | [data] control thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,272 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,295 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:18:45] 2025-06-04 18:00:43,417 | INFO     | [job] control thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,664 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,723 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,834 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:43,960 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:44,393 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:44,543 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:47,349 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:18:45] 2025-06-04 18:00:47,573 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140004248364864)>', '<ExcThread(monitor, started 140003501922048)>']
[2025-06-04 20:18:45] 2025-06-04 18:00:47,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:18:45] 2025-06-04 18:00:47,839 | INFO     | [monitor] control thread has ended
[2025-06-04 20:18:45] 2025-06-04 18:00:52,599 | INFO     | all workflow threads have been joined
[2025-06-04 20:18:45] 2025-06-04 18:00:52,599 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:18:45] 2025-06-04 18:00:52,600 | INFO     | traces error code: 0
[2025-06-04 20:18:45] 2025-06-04 18:00:52,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:18:45] 2025-06-04 18:00:52,979 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:18:45] 2025-06-04 18:00:53,058 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:18:45] 2025-06-04 18:00:53,111 [wrapper] pilotpid: 2148
[2025-06-04 20:18:45] 2025-06-04 18:00:53,119 [wrapper] Pilot exit status: 0
[2025-06-04 20:18:45] 2025-06-04 18:00:53,529 [wrapper] pandaids: 6678215881
[2025-06-04 20:18:45] 2025-06-04 18:00:54,454 [wrapper] cleanup supervisor_pilot 10505 2149
[2025-06-04 20:18:45] 2025-06-04 18:00:54,517 [wrapper] Test setup, not cleaning
[2025-06-04 20:18:45] 2025-06-04 18:00:54,597 [wrapper] apfmon messages muted
[2025-06-04 20:18:45] 2025-06-04 18:00:54,658 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:18:45] 2025-06-04 18:00:54,728 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:18:45]  *** Error codes and diagnostics ***
[2025-06-04 20:18:45]     "exeErrorCode": 0,
[2025-06-04 20:18:45]     "exeErrorDiag": "",
[2025-06-04 20:18:45]     "pilotErrorCode": 0,
[2025-06-04 20:18:45]     "pilotErrorDiag": "",
[2025-06-04 20:18:45]  *** Listing of results directory ***
[2025-06-04 20:18:45] total 389324
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:58 pilot3.tar.gz
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc      5111 Jun  4 02:36 queuedata.json
[2025-06-04 20:18:45] -rwx------. 1 boinc boinc     37140 Jun  4 02:38 runpilot2-wrapper.sh
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc       100 Jun  4 15:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:18:45] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 15:44 run_atlas
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc       105 Jun  4 15:44 job.xml
[2025-06-04 20:18:45] -rw-r--r--. 2 boinc boinc 214009192 Jun  4 15:44 EVNT.45006593._001969.pool.root.1
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc      6392 Jun  4 15:44 init_data.xml
[2025-06-04 20:18:45] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:44 start_atlas.sh
[2025-06-04 20:18:45] drwxrwx--x. 2 boinc boinc        68 Jun  4 15:44 shared
[2025-06-04 20:18:45] -rw-r--r--. 2 boinc boinc    508887 Jun  4 15:44 input.tar.gz
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc         0 Jun  4 15:44 boinc_lockfile
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc      2525 Jun  4 16:14 pandaJob.out
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc    986819 Jun  4 16:18 agis_schedconf.cvmfs.json
[2025-06-04 20:18:45] drwx------. 4 boinc boinc      4096 Jun  4 16:18 pilot3
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc 177787110 Jun  4 19:57 HITS.45006595._049103.pool.root.1
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc       531 Jun  4 19:58 boinc_task_state.xml
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc      1012 Jun  4 19:58 memory_monitor_summary.json
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc   1598969 Jun  4 19:59 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc    390079 Jun  4 19:59 log.45006595._049103.job.log.tgz.1
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc        95 Jun  4 19:59 pilot_heartbeat.json
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc      7687 Jun  4 20:00 heartbeat.json
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc      4539 Jun  4 20:00 pilotlog.txt
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc   1134529 Jun  4 20:00 log.45006595._049103.job.log.1
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc       357 Jun  4 20:00 output.list
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc       620 Jun  4 20:00 runtime_log
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc   1546240 Jun  4 20:00 result.tar.gz
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc      8659 Jun  4 20:00 runtime_log.err
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc       657 Jun  4 20:00 9eFNDmZKrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmNaKDmtz1JCo.diag
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc      8192 Jun  4 20:18 boinc_mmap_file
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc        28 Jun  4 20:18 wrapper_checkpoint.txt
[2025-06-04 20:18:45] -rw-r--r--. 1 boinc boinc     20489 Jun  4 20:18 stderr.txt
[2025-06-04 20:18:45] HITS file was successfully produced:
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc 177787110 Jun  4 19:57 shared/HITS.pool.root.1
[2025-06-04 20:18:45]  *** Contents of shared directory: ***
[2025-06-04 20:18:45] total 384648
[2025-06-04 20:18:45] -rw-r--r--. 2 boinc boinc 214009192 Jun  4 15:44 ATLAS.root_0
[2025-06-04 20:18:45] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:44 start_atlas.sh
[2025-06-04 20:18:45] -rw-r--r--. 2 boinc boinc    508887 Jun  4 15:44 input.tar.gz
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc 177787110 Jun  4 19:57 HITS.pool.root.1
[2025-06-04 20:18:45] -rw-------. 1 boinc boinc   1546240 Jun  4 20:00 result.tar.gz
20:18:47 (13840): run_atlas exited; CPU time 48542.563734
20:18:47 (13840): called boinc_finish(0)

</stderr_txt>
]]>

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