Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 02:58:29 (9712): Detected: vboxwrapper 26206
2025-06-05 02:58:29 (9712): Detected: BOINC client v8.0.2
2025-06-05 02:58:30 (9712): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-06-05 02:58:30 (9712): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 02:58:30 (9712): Create VM. (boinc_2926c0fd46233008, slot#0)
2025-06-05 02:58:31 (9712): Setting Memory Size for VM. (4600MB)
2025-06-05 02:58:31 (9712): Setting CPU Count for VM. (6)
2025-06-05 02:58:31 (9712): Setting Chipset Options for VM.
2025-06-05 02:58:32 (9712): Setting Graphics Controller Options for VM.
2025-06-05 02:58:32 (9712): Setting Boot Options for VM.
2025-06-05 02:58:32 (9712): Setting Network Configuration for NAT.
2025-06-05 02:58:32 (9712): Enabling VM Network Access.
2025-06-05 02:58:33 (9712): Disabling USB Support for VM.
2025-06-05 02:58:33 (9712): Disabling COM Port Support for VM.
2025-06-05 02:58:33 (9712): Disabling LPT Port Support for VM.
2025-06-05 02:58:33 (9712): Disabling Audio Support for VM.
2025-06-05 02:58:34 (9712): Disabling Clipboard Support for VM.
2025-06-05 02:58:34 (9712): Disabling Drag and Drop Support for VM.
2025-06-05 02:58:34 (9712): Adding storage controller(s) to VM.
2025-06-05 02:58:34 (9712): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 02:58:37 (9712): Adding VirtualBox Guest Additions to VM.
2025-06-05 02:58:37 (9712): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 02:58:38 (9712): forwarding host port 8185 to guest port 80
2025-06-05 02:58:38 (9712): Enabling remote desktop for VM.
2025-06-05 02:58:39 (9712): Enabling shared directory for VM.
2025-06-05 02:58:39 (9712): Starting VM using VBoxManage interface. (boinc_2926c0fd46233008, slot#0)
2025-06-05 02:58:48 (9712): Successfully started VM. (PID = '9044')
2025-06-05 02:58:48 (9712): Reporting VM Process ID to BOINC.
2025-06-05 02:58:48 (9712): Guest Log: BIOS: VirtualBox 7.0.22
2025-06-05 02:58:48 (9712): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 02:58:48 (9712): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-05 02:58:48 (9712): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 02:58:48 (9712): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 02:58:48 (9712): Detected: Web Application Enabled (http://localhost:8185)
2025-06-05 02:58:48 (9712): Detected: Remote Desktop Enabled (localhost:8186)
2025-06-05 02:58:48 (9712): Preference change detected
2025-06-05 02:58:48 (9712): Setting CPU throttle for VM. (80%)
2025-06-05 02:58:48 (9712): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 02:58:50 (9712): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 02:58:50 (9712): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 02:58:54 (9712): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 02:58:54 (9712): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 02:58:54 (9712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 02:59:05 (9712): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 02:59:05 (9712): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 02:59:21 (9712): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.000424 main     Log opened 2025-06-05T02:59:20.061115000Z
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.000628 main     OS Product: Linux
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.000698 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.000758 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.000819 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.000822 main     Process ID: 1336
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.000823 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 02:59:21 (9712): Guest Log: 00:00:00.003213 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 02:59:21 (9712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 02:59:21 (9712): Guest Log: [INFO] Mounting shared directory
2025-06-05 02:59:21 (9712): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 02:59:29 (9712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 02:59:29 (9712): Guest Log: [INFO] Detected branch: prod
2025-06-05 02:59:30 (9712): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 02:59:30 (9712): Guest Log: Copying input files
2025-06-05 02:59:31 (9712): Guest Log: 00:00:10.006662 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 789 313 539 000ns (GuestNow=1 749 081 570 753 381 000 ns GuestLast=1 749 092 360 066 920 000 ns fSetTimeLastLoop=true )
2025-06-05 02:59:32 (9712): Guest Log: Copied input files into RunAtlas.
2025-06-05 02:59:32 (9712): Guest Log: Detected user-configured HTTP proxy at http://http://proxy:3128 - will set in /etc/cvmfs/default.local
2025-06-05 02:59:48 (9712): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 02:59:49 (9712): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 02:59:49 (9712): Guest Log: 2.6.3.0 1614 0 29588 146798 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-06-05 02:59:50 (9712): Guest Log: copied the webapp to /var/www
2025-06-05 02:59:50 (9712): Guest Log: ATHENA_PROC_NUMBER=6
2025-06-05 02:59:50 (9712): Guest Log: ATHENA_CORE_NUMBER=6
2025-06-05 02:59:50 (9712): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 02:59:51 (9712): Guest Log:  *** Starting ATLAS job. (PandaID=6678286430 taskID=45006595) ***
2025-06-05 03:04:10 (9712): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 03:04:30 (9712): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 03:38:12 (9712): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 03:38:32 (9712): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 04:39:47 (9712): Status Report: Elapsed Time: '6000.385893'
2025-06-05 04:39:47 (9712): Status Report: CPU Time: '25921.390625'
2025-06-05 06:19:52 (9712): Status Report: Elapsed Time: '12000.385893'
2025-06-05 06:19:52 (9712): Status Report: CPU Time: '58273.609375'
2025-06-05 07:17:22 (9712): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 07:17:42 (9712): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 08:00:20 (9712): Status Report: Elapsed Time: '18000.385893'
2025-06-05 08:00:20 (9712): Status Report: CPU Time: '90623.890625'
2025-06-05 09:30:55 (9712): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 09:31:15 (9712): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 09:40:46 (9712): Status Report: Elapsed Time: '24000.385893'
2025-06-05 09:40:46 (9712): Status Report: CPU Time: '123001.687500'
2025-06-05 11:20:56 (9712): Status Report: Elapsed Time: '30000.385893'
2025-06-05 11:20:56 (9712): Status Report: CPU Time: '155399.718750'
2025-06-05 13:01:11 (9712): Status Report: Elapsed Time: '36000.385893'
2025-06-05 13:01:11 (9712): Status Report: CPU Time: '187800.187500'
2025-06-05 13:13:34 (9712): Guest Log:  *** Job finished ***
2025-06-05 13:13:34 (9712): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:13,489 | INFO     | [data] queue_monitor thread has finished
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:18,224 | INFO     | job.realtimelogging is not enabled
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:19,226 | INFO     | [payload] run_realtimelog thread has finished
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:20,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140324957357888)>', '<ExcThread(monitor, started 140324223575808)>']
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:20,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:20,942 | INFO     | [monitor] control thread has ended
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,583 | INFO     | all workflow threads have been joined
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,583 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,584 | INFO     | traces error code: 0
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,584 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,795 [wrapper] ==== pilot stdout END ====
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,806 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,818 [wrapper] pilotpid: 5980
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:25,830 [wrapper] Pilot exit status: 0
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:26,063 [wrapper] pandaids: 6678286430
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:26,138 [wrapper] cleanup supervisor_pilot 10358 5981
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:26,160 [wrapper] Test setup, not cleaning
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:26,185 [wrapper] apfmon messages muted
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:26,197 [wrapper] ==== wrapper stdout END ====
2025-06-05 13:13:34 (9712): Guest Log: 2025-06-05 10:12:26,209 [wrapper] ==== wrapper stderr END ====
2025-06-05 13:13:34 (9712): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 13:13:34 (9712): Guest Log:     "exeErrorCode": 0,
2025-06-05 13:13:34 (9712): Guest Log:     "exeErrorDiag": "",
2025-06-05 13:13:34 (9712): Guest Log:     "pilotErrorCode": 0,
2025-06-05 13:13:34 (9712): Guest Log:     "pilotErrorDiag": "",
2025-06-05 13:13:34 (9712): Guest Log:  *** Listing of results directory ***
2025-06-05 13:13:34 (9712): Guest Log: total 183788
2025-06-05 13:13:34 (9712): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 02:52 pilot3.tar.gz
2025-06-05 13:13:34 (9712): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 03:13 queuedata.json
2025-06-05 13:13:34 (9712): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 03:13 runpilot2-wrapper.sh
2025-06-05 13:13:34 (9712): Guest Log: -rwxr-xr-x. 1 atlas atlas      6279 Jun  4 23:59 init_data.xml
2025-06-05 13:13:34 (9712): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 Jun  4 23:59 input.tar.gz
2025-06-05 13:13:34 (9712): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 23:59 start_atlas.sh
2025-06-05 13:13:34 (9712): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 23:59 EVNT.45006593._002058.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 13:13:34 (9712): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  4 23:59 pandaJob.out
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas    987117 Jun  5 00:03 agis_schedconf.cvmfs.json
2025-06-05 13:13:34 (9712): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 00:03 pilot3
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas 178028126 Jun  5 10:09 HITS.45006595._051358.pool.root.1
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas      1046 Jun  5 10:10 memory_monitor_summary.json
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 10:10 agis_ddmendpoints.agis.ALL.json
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas    519344 Jun  5 10:10 log.45006595._051358.job.log.tgz.1
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 10:11 pilot_heartbeat.json
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas      7729 Jun  5 10:12 heartbeat.json
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas      4608 Jun  5 10:12 pilotlog.txt
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas   2684932 Jun  5 10:12 log.45006595._051358.job.log.1
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 10:12 output.list
2025-06-05 13:13:34 (9712): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 10:12 runtime_log
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas   3225600 Jun  5 10:12 result.tar.gz
2025-06-05 13:13:34 (9712): Guest Log: -rw-r--r--. 1 atlas atlas      8587 Jun  5 10:12 runtime_log.err
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas       657 Jun  5 10:12 rgNNDmWktg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJbaKDmeMouVm.diag
2025-06-05 13:13:34 (9712): Guest Log: Looking for outputfile HITS.45006595._051358.pool.root.1
2025-06-05 13:13:34 (9712): Guest Log: HITS file was successfully produced
2025-06-05 13:13:34 (9712): Guest Log: -rw-------. 1 atlas atlas 178028126 Jun  5 10:09 /home/atlas/RunAtlas/HITS.45006595._051358.pool.root.1
2025-06-05 13:13:36 (9712): Guest Log: Successfully finished the ATLAS job!
2025-06-05 13:13:36 (9712): Guest Log: Copying the results back to the shared directory!
2025-06-05 13:13:36 (9712): Guest Log:  *** Contents of shared directory: ***
2025-06-05 13:13:36 (9712): Guest Log: total 386300
2025-06-05 13:13:36 (9712): Guest Log: -rwxrwxrwx. 1 root root 213776270 Jun  4 23:58 ATLAS.root_0
2025-06-05 13:13:36 (9712): Guest Log: -rwxrwxrwx. 1 root root 178028126 Jun  5  2025 HITS.pool.root.1
2025-06-05 13:13:36 (9712): Guest Log: -rwxrwxrwx. 1 root root      6279 Jun  4 23:58 init_data.xml
2025-06-05 13:13:36 (9712): Guest Log: -rwxrwxrwx. 1 root root    508882 Jun  4 05:18 input.tar.gz
2025-06-05 13:13:36 (9712): Guest Log: -rwxrwxrwx. 1 root root   3225600 Jun  5  2025 result.tar.gz
2025-06-05 13:13:36 (9712): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 05:18 start_atlas.sh
2025-06-05 13:13:36 (9712): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 13:13:37 (9712): VM Completion File Detected.
2025-06-05 13:13:37 (9712): Powering off VM.
2025-06-05 13:13:38 (9712): Successfully stopped VM.
2025-06-05 13:13:38 (9712): Deregistering VM. (boinc_2926c0fd46233008, slot#0)
2025-06-05 13:13:38 (9712): Removing network bandwidth throttle group from VM.
2025-06-05 13:13:38 (9712): Removing VM from VirtualBox.
13:13:44 (9712): called boinc_finish(0)

</stderr_txt>
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