Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:35:56 (4079548): wrapper (7.7.26015): starting
12:35:56 (4079548): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 12:35:56] Arguments: --nthreads 4
[2025-06-06 12:35:56] Threads: 4
[2025-06-06 12:35:56] Checking for CVMFS
[2025-06-06 12:35:56] No cvmfs_config command found, will try listing directly
[2025-06-06 12:35:56] CVMFS is ok
[2025-06-06 12:35:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 12:35:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 12:35:56] Further information can be found at the LHC@home message board.
[2025-06-06 12:35:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 12:35:56] Checking for apptainer binary...
[2025-06-06 12:35:56] which: no apptainer in ((null))
[2025-06-06 12:35:56] apptainer is not installed, using version from CVMFS
[2025-06-06 12:35:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 12:35:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-06 12:35:57] apptainer works
[2025-06-06 12:35:57] Set ATHENA_PROC_NUMBER=4
[2025-06-06 12:35:57] Set ATHENA_CORE_NUMBER=4
[2025-06-06 12:35:57] Starting ATLAS job with PandaID=6678214409
[2025-06-06 12:35:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 13:57:59]  *** The last 200 lines of the pilot log: ***
[2025-06-06 13:57:59]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-06 13:57:59]  is_altstaged=None
[2025-06-06 13:57:59]  is_tar=False
[2025-06-06 13:57:59]  lfn=log.45006595._048924.job.log.tgz.1
[2025-06-06 13:57:59]  mtime=0
[2025-06-06 13:57:59]  protocol_id=None
[2025-06-06 13:57:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 13:57:59]  replicas=None
[2025-06-06 13:57:59]  scope=mc23_13p6TeV
[2025-06-06 13:57:59]  status=None
[2025-06-06 13:57:59]  status_code=0
[2025-06-06 13:57:59]  storage_token=
[2025-06-06 13:57:59]  surl=/scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678214409/log.45006595._048924.job.log.tgz.1
[2025-06-06 13:57:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/86/log.45006595._048924.job.log.tgz.1
[2025-06-06 13:57:59]  workdir=None
[2025-06-06 13:57:59] ]
[2025-06-06 13:57:59] 2025-06-06 11:57:15,664 | INFO     | transferring file log.45006595._048924.job.log.tgz.1 from /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678214409/log.45006595._048924.job.log.tgz.1 to /scratch/b
[2025-06-06 13:57:59] 2025-06-06 11:57:15,664 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678214409/log.45006595._048924.job.log.tgz.1 /scratch/boinc/var/slot68/slots/0/lo
[2025-06-06 13:57:59] 2025-06-06 11:57:15,681 | INFO     | adding to output.list: log.45006595._048924.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/86/log.45006595._048924.job.log.tg
[2025-06-06 13:57:59] 2025-06-06 11:57:15,682 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 13:57:59] 2025-06-06 11:57:15,682 | INFO     | summary of transferred files:
[2025-06-06 13:57:59] 2025-06-06 11:57:15,682 | INFO     |  -- lfn=log.45006595._048924.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 13:57:59] 2025-06-06 11:57:15,682 | INFO     | stage-out finished correctly
[2025-06-06 13:57:59] 2025-06-06 11:57:16,011 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 13:57:59] 2025-06-06 11:57:17,085 | INFO     | monitor loop #360: job 0:6678214409 is in state 'finished'
[2025-06-06 13:57:59] 2025-06-06 11:57:17,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:57:59] 2025-06-06 11:57:19,077 | INFO     | job 6678214409 has state=finished
[2025-06-06 13:57:59] 2025-06-06 11:57:19,077 | INFO     | preparing for final server update for job 6678214409 in state='finished'
[2025-06-06 13:57:59] 2025-06-06 11:57:19,078 | INFO     | this job has now completed (state=finished)
[2025-06-06 13:57:59] 2025-06-06 11:57:19,078 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 13:57:59] 2025-06-06 11:57:19,078 | INFO     | log transfer has been attempted: DONE
[2025-06-06 13:57:59] 2025-06-06 11:57:19,078 | INFO     | job 6678214409 has finished - writing final server update
[2025-06-06 13:57:59] 2025-06-06 11:57:19,078 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_6552/.job.ad'
[2025-06-06 13:57:59] 2025-06-06 11:57:19,078 | INFO     | total number of processed events: 400 (read)
[2025-06-06 13:57:59] 2025-06-06 11:57:19,086 | INFO     | executing command: lscpu
[2025-06-06 13:57:59] 2025-06-06 11:57:19,163 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 13:57:59] 2025-06-06 11:57:19,589 | INFO     | monitor loop #361: job 0:6678214409 is in state 'finished'
[2025-06-06 13:57:59] 2025-06-06 11:57:19,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:57:59] 2025-06-06 11:57:22,093 | INFO     | monitor loop #362: job 0:6678214409 is in state 'finished'
[2025-06-06 13:57:59] 2025-06-06 11:57:22,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 13:57:59] 2025-06-06 11:57:24,094 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 13:57:59] 2025-06-06 11:57:24,094 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678214409/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 13:57:59] 2025-06-06 11:57:24,095 | INFO     | extracted standard info from prmon json
[2025-06-06 13:57:59] 2025-06-06 11:57:24,095 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 13:57:59] 2025-06-06 11:57:24,095 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 13:57:59] 2025-06-06 11:57:24,095 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 13:57:59] 2025-06-06 11:57:24,095 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | fitting pss+swap vs Time
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | sum of square deviations: 120605052.0
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | sum of deviations: -2555418343.9999995
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | mean x: 1749208693.0
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | mean y: 2396175.1369863013
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | -- intersect: 37065188383.67949
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | intersect: 37065188383.67949
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | chi2: 0.008150376151533101
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | -- intersect: 37065188383.67949
[2025-06-06 13:57:59] 2025-06-06 11:57:24,097 | INFO     | current memory leak: -21.19 B/s (using 73 data points, chi2=0.01)
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | ..............................
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . Timing measurements:
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . get job = 0 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . initial setup = 1 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . payload setup = 6 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . stage-in = 0 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . payload execution = 4844 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . stage-out = 0 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | . log creation = 0 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,098 | INFO     | ..............................
[2025-06-06 13:57:59] 2025-06-06 11:57:24,155 | INFO     | 
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | job summary report
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | --------------------------------------------------
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | PanDA job id: 6678214409
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | task id: 45006595
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | errors: (none)
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | pilot state: finished 
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | transexitcode: 0
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | exeerrorcode: 0
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | exeerrordiag: 
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | exitcode: 0
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | exitmsg: OK
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | cpuconsumptiontime: 18516 s
[2025-06-06 13:57:59] 2025-06-06 11:57:24,156 | INFO     | nevents: 400
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | neventsw: 0
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | pid: 4090852
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | pgrp: 4090852
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | corecount: 4
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | event service: False
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | sizes: {0: 2397126, 1: 2397381, 5: 2397587, 11: 2397643, 4854: 2423857, 4855: 2433004, 4863: 2433118}
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | --------------------------------------------------
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | 
[2025-06-06 13:57:59] 2025-06-06 11:57:24,157 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2025-06-06 13:57:59] 2025-06-06 11:57:24,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 13:57:59] 2025-06-06 11:57:24,178 | INFO     | job 6678214409 has completed (purged errors)
[2025-06-06 13:57:59] 2025-06-06 11:57:24,179 | INFO     | overall cleanup function is called
[2025-06-06 13:57:59] 2025-06-06 11:57:25,186 | INFO     | --- collectZombieJob: --- 10, [4090852]
[2025-06-06 13:57:59] 2025-06-06 11:57:25,186 | INFO     | zombie collector waiting for pid 4090852
[2025-06-06 13:57:59] 2025-06-06 11:57:25,186 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 13:57:59] 2025-06-06 11:57:25,186 | INFO     | collected zombie processes
[2025-06-06 13:57:59] 2025-06-06 11:57:25,187 | INFO     | will attempt to kill all subprocesses of pid=4090852
[2025-06-06 13:57:59] 2025-06-06 11:57:25,515 | INFO     | process IDs to be killed: [4090852] (in reverse order)
[2025-06-06 13:57:59] 2025-06-06 11:57:25,630 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 13:57:59] 2025-06-06 11:57:25,631 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 13:57:59] 2025-06-06 11:57:25,645 | INFO     | did not find any defunct processes belonging to 4090852
[2025-06-06 13:57:59] 2025-06-06 11:57:25,656 | INFO     | did not find any defunct processes belonging to 4090852
[2025-06-06 13:57:59] 2025-06-06 11:57:25,656 | INFO     | ready for new job
[2025-06-06 13:57:59] 2025-06-06 11:57:25,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 13:57:59] 2025-06-06 11:57:25,657 | INFO     | **************************************
[2025-06-06 13:57:59] 2025-06-06 11:57:25,657 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 13:57:59] 2025-06-06 11:57:25,657 | INFO     | **************************************
[2025-06-06 13:57:59] 2025-06-06 11:57:25,657 | INFO     | 
[2025-06-06 13:57:59] 2025-06-06 11:57:25,663 | INFO     | architecture information:
[2025-06-06 13:57:59] 2025-06-06 11:57:25,663 | INFO     | executing command: cat /etc/os-release
[2025-06-06 13:57:59] 2025-06-06 11:57:25,679 | INFO     | cat /etc/os-release:
[2025-06-06 13:57:59] NAME="CentOS Linux"
[2025-06-06 13:57:59] VERSION="7 (Core)"
[2025-06-06 13:57:59] ID="centos"
[2025-06-06 13:57:59] ID_LIKE="rhel fedora"
[2025-06-06 13:57:59] VERSION_ID="7"
[2025-06-06 13:57:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 13:57:59] ANSI_COLOR="0;31"
[2025-06-06 13:57:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 13:57:59] HOME_URL="https://www.centos.org/"
[2025-06-06 13:57:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 13:57:59] 
[2025-06-06 13:57:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 13:57:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 13:57:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 13:57:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 13:57:59] 
[2025-06-06 13:57:59] 2025-06-06 11:57:25,679 | INFO     | **************************************
[2025-06-06 13:57:59] 2025-06-06 11:57:26,180 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2025-06-06 13:57:59] 2025-06-06 11:57:26,194 | INFO     | sufficient remaining disk space (3351424008192 B)
[2025-06-06 13:57:59] 2025-06-06 11:57:26,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 13:57:59] 2025-06-06 11:57:26,194 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 13:57:59] 2025-06-06 11:57:26,194 | INFO     | update_server=False
[2025-06-06 13:57:59] 2025-06-06 11:57:26,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 13:57:59] 2025-06-06 11:57:26,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 13:57:59] 2025-06-06 11:57:26,194 | INFO     | aborting loop
[2025-06-06 13:57:59] 2025-06-06 11:57:26,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 13:57:59] 2025-06-06 11:57:26,295 | INFO     | all payload control threads have been joined
[2025-06-06 13:57:59] 2025-06-06 11:57:26,406 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 13:57:59] 2025-06-06 11:57:26,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 13:57:59] 2025-06-06 11:57:26,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 13:57:59] 2025-06-06 11:57:26,583 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 13:57:59] 2025-06-06 11:57:27,133 | INFO     | all data control threads have been joined
[2025-06-06 13:57:59] 2025-06-06 11:57:27,199 | INFO     | [job] retrieve thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:27,200 | INFO     | [job] job monitor thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:27,296 | INFO     | [payload] control thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:27,357 | INFO     | [payload] validate_post thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:27,854 | INFO     | all job control threads have been joined
[2025-06-06 13:57:59] 2025-06-06 11:57:27,994 | INFO     | [job] validate thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,104 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,106 | INFO     | [data] copytool_in thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,138 | INFO     | [data] control thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,162 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,259 | INFO     | [data] copytool_out thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,413 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,569 | INFO     | [payload] failed_post thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:28,859 | INFO     | [job] control thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:29,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 13:57:59] 2025-06-06 11:57:30,171 | INFO     | [job] queue monitor thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:30,588 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:37,021 | INFO     | job.realtimelogging is not enabled
[2025-06-06 13:57:59] 2025-06-06 11:57:38,027 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 13:57:59] 2025-06-06 11:57:39,085 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23189996984128)>', '<ExcThread(monitor, started 23189759428352)>']
[2025-06-06 13:57:59] 2025-06-06 11:57:39,472 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 13:57:59] 2025-06-06 11:57:39,472 | INFO     | [monitor] control thread has ended
[2025-06-06 13:57:59] 2025-06-06 11:57:44,110 | INFO     | all workflow threads have been joined
[2025-06-06 13:57:59] 2025-06-06 11:57:44,110 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 13:57:59] 2025-06-06 11:57:44,111 | INFO     | traces error code: 0
[2025-06-06 13:57:59] 2025-06-06 11:57:44,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 13:57:59] 2025-06-06 11:57:44,263 [wrapper] ==== pilot stdout END ====
[2025-06-06 13:57:59] 2025-06-06 11:57:44,267 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 13:57:59] 2025-06-06 11:57:44,269 [wrapper] pilotpid: 4083490
[2025-06-06 13:57:59] 2025-06-06 11:57:44,271 [wrapper] Pilot exit status: 0
[2025-06-06 13:57:59] 2025-06-06 11:57:44,281 [wrapper] pandaids: 6678214409
[2025-06-06 13:57:59] 2025-06-06 11:57:44,366 [wrapper] cleanup supervisor_pilot 4155234 4083491
[2025-06-06 13:57:59] 2025-06-06 11:57:44,369 [wrapper] Test setup, not cleaning
[2025-06-06 13:57:59] 2025-06-06 11:57:44,372 [wrapper] apfmon messages muted
[2025-06-06 13:57:59] 2025-06-06 11:57:44,374 [wrapper] ==== wrapper stdout END ====
[2025-06-06 13:57:59] 2025-06-06 11:57:44,376 [wrapper] ==== wrapper stderr END ====
[2025-06-06 13:57:59]  *** Error codes and diagnostics ***
[2025-06-06 13:57:59]     "exeErrorCode": 0,
[2025-06-06 13:57:59]     "exeErrorDiag": "",
[2025-06-06 13:57:59]     "pilotErrorCode": 0,
[2025-06-06 13:57:59]     "pilotErrorDiag": "",
[2025-06-06 13:57:59]  *** Listing of results directory ***
[2025-06-06 13:57:59] total 390192
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc    495897 Jun  4 01:58 pilot3.tar.gz
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc      5111 Jun  4 02:36 queuedata.json
[2025-06-06 13:57:59] -rwx------ 1 boinc boinc     37140 Jun  4 02:36 runpilot2-wrapper.sh
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc       100 Jun  6 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 13:57:59] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 12:35 run_atlas
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc       105 Jun  6 12:35 job.xml
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc      6684 Jun  6 12:35 init_data.xml
[2025-06-06 13:57:59] -rw-r--r-- 2 boinc boinc 214570365 Jun  6 12:35 EVNT.45006593._001962.pool.root.1
[2025-06-06 13:57:59] drwxrwx--x 2 boinc boinc      4096 Jun  6 12:35 shared
[2025-06-06 13:57:59] -rw-r--r-- 2 boinc boinc    508877 Jun  6 12:35 input.tar.gz
[2025-06-06 13:57:59] -rw-r--r-- 2 boinc boinc     15093 Jun  6 12:35 start_atlas.sh
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc         0 Jun  6 12:35 boinc_lockfile
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc      2525 Jun  6 12:35 pandaJob.out
[2025-06-06 13:57:59] -rw------- 1 boinc boinc    985732 Jun  6 12:36 agis_schedconf.cvmfs.json
[2025-06-06 13:57:59] -rw------- 1 boinc boinc   1598969 Jun  6 12:36 agis_ddmendpoints.agis.ALL.json
[2025-06-06 13:57:59] drwx------ 4 boinc boinc      4096 Jun  6 12:36 pilot3
[2025-06-06 13:57:59] -rw------- 1 boinc boinc 179697621 Jun  6 13:56 HITS.45006595._048924.pool.root.1
[2025-06-06 13:57:59] -rw------- 1 boinc boinc        95 Jun  6 13:56 pilot_heartbeat.json
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc       528 Jun  6 13:57 boinc_task_state.xml
[2025-06-06 13:57:59] -rw------- 1 boinc boinc      1024 Jun  6 13:57 memory_monitor_summary.json
[2025-06-06 13:57:59] -rw------- 1 boinc boinc    252890 Jun  6 13:57 log.45006595._048924.job.log.tgz.1
[2025-06-06 13:57:59] -rw------- 1 boinc boinc      7696 Jun  6 13:57 heartbeat.json
[2025-06-06 13:57:59] -rw------- 1 boinc boinc      4436 Jun  6 13:57 pilotlog.txt
[2025-06-06 13:57:59] -rw------- 1 boinc boinc    472853 Jun  6 13:57 log.45006595._048924.job.log.1
[2025-06-06 13:57:59] -rw------- 1 boinc boinc       357 Jun  6 13:57 output.list
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc       620 Jun  6 13:57 runtime_log
[2025-06-06 13:57:59] -rw------- 1 boinc boinc    747520 Jun  6 13:57 result.tar.gz
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc      9025 Jun  6 13:57 runtime_log.err
[2025-06-06 13:57:59] -rw------- 1 boinc boinc       662 Jun  6 13:57 YQkLDmcIrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmhMaKDmUobPMo.diag
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc      8192 Jun  6 13:57 boinc_mmap_file
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc        26 Jun  6 13:57 wrapper_checkpoint.txt
[2025-06-06 13:57:59] -rw-r--r-- 1 boinc boinc     21189 Jun  6 13:57 stderr.txt
[2025-06-06 13:57:59] HITS file was successfully produced:
[2025-06-06 13:57:59] -rw------- 1 boinc boinc 179697621 Jun  6 13:56 shared/HITS.pool.root.1
[2025-06-06 13:57:59]  *** Contents of shared directory: ***
[2025-06-06 13:57:59] total 386288
[2025-06-06 13:57:59] -rw-r--r-- 2 boinc boinc 214570365 Jun  6 12:35 ATLAS.root_0
[2025-06-06 13:57:59] -rw-r--r-- 2 boinc boinc    508877 Jun  6 12:35 input.tar.gz
[2025-06-06 13:57:59] -rw-r--r-- 2 boinc boinc     15093 Jun  6 12:35 start_atlas.sh
[2025-06-06 13:57:59] -rw------- 1 boinc boinc 179697621 Jun  6 13:56 HITS.pool.root.1
[2025-06-06 13:57:59] -rw------- 1 boinc boinc    747520 Jun  6 13:57 result.tar.gz
13:58:01 (4079548): run_atlas exited; CPU time 18644.188123
13:58:01 (4079548): called boinc_finish(0)

</stderr_txt>
]]>

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