Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:19:36 (3008390): wrapper (7.7.26015): starting
01:19:36 (3008390): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 01:19:36] Arguments: --nthreads 8
[2025-06-04 01:19:36] Threads: 8
[2025-06-04 01:19:36] Checking for CVMFS
[2025-06-04 01:19:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:19:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:19:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:19:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:19:37] 2.12.6.0 3074763 23103 320048 146769 2 105 17250050 32935937 17683 16776704 0 59647671 99.620 62566381 10366 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 01:19:37] CVMFS is ok
[2025-06-04 01:19:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 01:19:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 01:19:37] Further information can be found at the LHC@home message board.
[2025-06-04 01:19:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:19:37] Checking for apptainer binary...
[2025-06-04 01:19:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:19:37] Running /usr/bin/apptainer --version
[2025-06-04 01:19:37] apptainer version 1.4.1-1.el9
[2025-06-04 01:19:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:19:38] c6-12-25-1.aglt2.org
[2025-06-04 01:19:38] apptainer works
[2025-06-04 01:19:38] Set ATHENA_PROC_NUMBER=8
[2025-06-04 01:19:38] Set ATHENA_CORE_NUMBER=8
[2025-06-04 01:19:38] Starting ATLAS job with PandaID=6678214473
[2025-06-04 01:19:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:04:13]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:04:13] 2025-06-04 09:03:51,330 | INFO     | -- intersect: -44434385069.84649
[2025-06-04 05:04:13] 2025-06-04 09:03:51,330 | INFO     | intersect: -44434385069.84649
[2025-06-04 05:04:13] 2025-06-04 09:03:51,331 | INFO     | chi2: 5.133926075485098
[2025-06-04 05:04:13] 2025-06-04 09:03:51,332 | INFO     | sum of square deviations: 3081703417.534897
[2025-06-04 05:04:13] 2025-06-04 09:03:51,336 | INFO     | sum of deviations: 94981373314.09308
[2025-06-04 05:04:13] 2025-06-04 09:03:51,336 | INFO     | mean x: 1749020970.0465117
[2025-06-04 05:04:13] 2025-06-04 09:03:51,337 | INFO     | mean y: 2099493.7906976743
[2025-06-04 05:04:13] 2025-06-04 09:03:51,337 | INFO     | -- intersect: -53904584953.81603
[2025-06-04 05:04:13] 2025-06-04 09:03:51,337 | INFO     | intersect: -53904584953.81603
[2025-06-04 05:04:13] 2025-06-04 09:03:51,338 | INFO     | chi2: 4.397465117230298
[2025-06-04 05:04:13] 2025-06-04 09:03:51,338 | INFO     | current chi2=4.397465117230298 (change=14.344985639186728 %)
[2025-06-04 05:04:13] 2025-06-04 09:03:51,339 | INFO     | right removable region: 214
[2025-06-04 05:04:13] 2025-06-04 09:03:51,340 | INFO     | sum of square deviations: 3081697317.534897
[2025-06-04 05:04:13] 2025-06-04 09:03:51,343 | INFO     | sum of deviations: 37566206965.90694
[2025-06-04 05:04:13] 2025-06-04 09:03:51,343 | INFO     | mean x: 1749021275.0465117
[2025-06-04 05:04:13] 2025-06-04 09:03:51,344 | INFO     | mean y: 2123986.6093023256
[2025-06-04 05:04:13] 2025-06-04 09:03:51,344 | INFO     | -- intersect: -21318625079.924442
[2025-06-04 05:04:13] 2025-06-04 09:03:51,344 | INFO     | intersect: -21318625079.924442
[2025-06-04 05:04:13] 2025-06-04 09:03:51,345 | INFO     | chi2: 2.647628409012161
[2025-06-04 05:04:13] 2025-06-04 09:03:51,345 | INFO     | current chi2=2.647628409012161 (change=48.42877809139489 %)
[2025-06-04 05:04:13] 2025-06-04 09:03:51,346 | INFO     | sum of square deviations: 2871653120.0238132
[2025-06-04 05:04:13] 2025-06-04 09:03:51,350 | INFO     | sum of deviations: 3939002706.428583
[2025-06-04 05:04:13] 2025-06-04 09:03:51,350 | INFO     | mean x: 1749021427.547619
[2025-06-04 05:04:13] 2025-06-04 09:03:51,350 | INFO     | mean y: 2148378.057142857
[2025-06-04 05:04:13] 2025-06-04 09:03:51,351 | INFO     | -- intersect: -2396957589.398469
[2025-06-04 05:04:13] 2025-06-04 09:03:51,351 | INFO     | intersect: -2396957589.398469
[2025-06-04 05:04:13] 2025-06-04 09:03:51,352 | INFO     | chi2: 1.4406568125768167
[2025-06-04 05:04:13] 2025-06-04 09:03:51,352 | INFO     | current chi2=1.4406568125768167 (change=45.586895514755014 %)
[2025-06-04 05:04:13] 2025-06-04 09:03:51,353 | INFO     | sum of square deviations: 2671376547.512177
[2025-06-04 05:04:13] 2025-06-04 09:03:51,356 | INFO     | sum of deviations: -16041293443.926826
[2025-06-04 05:04:13] 2025-06-04 09:03:51,356 | INFO     | mean x: 1749021580.0487804
[2025-06-04 05:04:13] 2025-06-04 09:03:51,357 | INFO     | mean y: 2163558.092682927
[2025-06-04 05:04:13] 2025-06-04 09:03:51,357 | INFO     | -- intersect: 10504826850.338701
[2025-06-04 05:04:13] 2025-06-04 09:03:51,357 | INFO     | intersect: 10504826850.338701
[2025-06-04 05:04:13] 2025-06-04 09:03:51,358 | INFO     | chi2: 0.9836347376115446
[2025-06-04 05:04:13] 2025-06-04 09:03:51,358 | INFO     | current chi2=0.9836347376115446 (change=31.723174525362772 %)
[2025-06-04 05:04:13] 2025-06-04 09:03:51,359 | INFO     | sum of square deviations: 2480635037.5000052
[2025-06-04 05:04:13] 2025-06-04 09:03:51,362 | INFO     | sum of deviations: -23711059386.85
[2025-06-04 05:04:13] 2025-06-04 09:03:51,363 | INFO     | mean x: 1749021732.55
[2025-06-04 05:04:13] 2025-06-04 09:03:51,363 | INFO     | mean y: 2169678.935
[2025-06-04 05:04:13] 2025-06-04 09:03:51,363 | INFO     | -- intersect: 16720130016.695581
[2025-06-04 05:04:13] 2025-06-04 09:03:51,363 | INFO     | intersect: 16720130016.695581
[2025-06-04 05:04:13] 2025-06-04 09:03:51,364 | INFO     | chi2: 0.9003473704755334
[2025-06-04 05:04:13] 2025-06-04 09:03:51,365 | INFO     | current chi2=0.9003473704755334 (change=8.46730640463645 %)
[2025-06-04 05:04:13] 2025-06-04 09:03:51,365 | INFO     | left removable region: 40
[2025-06-04 05:04:13] 2025-06-04 09:03:51,366 | INFO     | sum of square deviations: 1633505985.034483
[2025-06-04 05:04:13] 2025-06-04 09:03:51,368 | INFO     | sum of deviations: 1130046266.2758605
[2025-06-04 05:04:13] 2025-06-04 09:03:51,368 | INFO     | mean x: 1749022159.5517242
[2025-06-04 05:04:13] 2025-06-04 09:03:51,369 | INFO     | mean y: 2167488.247126437
[2025-06-04 05:04:13] 2025-06-04 09:03:51,369 | INFO     | -- intersect: -1207791935.9256876
[2025-06-04 05:04:13] 2025-06-04 09:03:51,369 | INFO     | intersect: -1207791935.9256876
[2025-06-04 05:04:13] 2025-06-04 09:03:51,370 | INFO     | chi2: 0.08516482194916308
[2025-06-04 05:04:13] 2025-06-04 09:03:51,370 | INFO     | -- intersect: -1207791935.9256876
[2025-06-04 05:04:13] 2025-06-04 09:03:51,371 | INFO     | current memory leak: 0.69 B/s (using 174 data points, chi2=0.09)
[2025-06-04 05:04:13] 2025-06-04 09:03:51,372 | INFO     | ..............................
[2025-06-04 05:04:13] 2025-06-04 09:03:51,372 | INFO     | . Timing measurements:
[2025-06-04 05:04:13] 2025-06-04 09:03:51,373 | INFO     | . get job = 0 s
[2025-06-04 05:04:13] 2025-06-04 09:03:51,373 | INFO     | . initial setup = 4 s
[2025-06-04 05:04:13] 2025-06-04 09:03:51,373 | INFO     | . payload setup = 14 s
[2025-06-04 05:04:13] 2025-06-04 09:03:51,373 | INFO     | . stage-in = 0 s
[2025-06-04 05:04:13] 2025-06-04 09:03:51,374 | INFO     | . payload execution = 13380 s
[2025-06-04 05:04:13] 2025-06-04 09:03:51,374 | INFO     | . stage-out = 3 s
[2025-06-04 05:04:13] 2025-06-04 09:03:51,374 | INFO     | . log creation = 0 s
[2025-06-04 05:04:13] 2025-06-04 09:03:51,374 | INFO     | ..............................
[2025-06-04 05:04:13] 2025-06-04 09:03:52,130 | INFO     | 
[2025-06-04 05:04:13] 2025-06-04 09:03:52,139 | INFO     | job summary report
[2025-06-04 05:04:13] 2025-06-04 09:03:52,140 | INFO     | --------------------------------------------------
[2025-06-04 05:04:13] 2025-06-04 09:03:52,140 | INFO     | PanDA job id: 6678214473
[2025-06-04 05:04:13] 2025-06-04 09:03:52,140 | INFO     | task id: 45006595
[2025-06-04 05:04:13] 2025-06-04 09:03:52,141 | INFO     | errors: (none)
[2025-06-04 05:04:13] 2025-06-04 09:03:52,141 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:04:13] 2025-06-04 09:03:52,141 | INFO     | pilot state: finished 
[2025-06-04 05:04:13] 2025-06-04 09:03:52,142 | INFO     | transexitcode: 0
[2025-06-04 05:04:13] 2025-06-04 09:03:52,142 | INFO     | exeerrorcode: 0
[2025-06-04 05:04:13] 2025-06-04 09:03:52,142 | INFO     | exeerrordiag: 
[2025-06-04 05:04:13] 2025-06-04 09:03:52,142 | INFO     | exitcode: 0
[2025-06-04 05:04:13] 2025-06-04 09:03:52,143 | INFO     | exitmsg: OK
[2025-06-04 05:04:13] 2025-06-04 09:03:52,143 | INFO     | cpuconsumptiontime: 93659 s
[2025-06-04 05:04:13] 2025-06-04 09:03:52,143 | INFO     | nevents: 400
[2025-06-04 05:04:13] 2025-06-04 09:03:52,143 | INFO     | neventsw: 0
[2025-06-04 05:04:13] 2025-06-04 09:03:52,144 | INFO     | pid: 3026610
[2025-06-04 05:04:13] 2025-06-04 09:03:52,144 | INFO     | pgrp: 3026610
[2025-06-04 05:04:13] 2025-06-04 09:03:52,144 | INFO     | corecount: 8
[2025-06-04 05:04:13] 2025-06-04 09:03:52,144 | INFO     | event service: False
[2025-06-04 05:04:13] 2025-06-04 09:03:52,145 | INFO     | sizes: {0: 2405013, 1: 2405098, 2: 2405212, 11: 2405446, 13: 2405474, 13395: 2435803, 13399: 2444744, 13403: 2444800, 13411: 2444970}
[2025-06-04 05:04:13] 2025-06-04 09:03:52,145 | INFO     | --------------------------------------------------
[2025-06-04 05:04:13] 2025-06-04 09:03:52,145 | INFO     | 
[2025-06-04 05:04:13] 2025-06-04 09:03:52,146 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 05:04:13] 2025-06-04 09:03:52,187 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,189 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,190 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,190 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,191 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,191 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,192 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,192 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,192 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,192 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:04:13] 2025-06-04 09:03:52,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,193 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:04:13] 2025-06-04 09:03:52,193 | INFO     | job 6678214473 has completed (purged errors)
[2025-06-04 05:04:13] 2025-06-04 09:03:52,194 | INFO     | overall cleanup function is called
[2025-06-04 05:04:13] 2025-06-04 09:03:52,921 | INFO     | PID=3012476 has CPU usage=27.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 05:04:13] 2025-06-04 09:03:52,923 | INFO     | .. there are 15 such processes running
[2025-06-04 05:04:13] 2025-06-04 09:03:53,207 | INFO     | --- collectZombieJob: --- 10, [3026610]
[2025-06-04 05:04:13] 2025-06-04 09:03:53,208 | INFO     | zombie collector waiting for pid 3026610
[2025-06-04 05:04:13] 2025-06-04 09:03:53,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:04:13] 2025-06-04 09:03:53,209 | INFO     | collected zombie processes
[2025-06-04 05:04:13] 2025-06-04 09:03:53,209 | INFO     | will attempt to kill all subprocesses of pid=3026610
[2025-06-04 05:04:13] 2025-06-04 09:03:54,105 | INFO     | process IDs to be killed: [3026610] (in reverse order)
[2025-06-04 05:04:13] 2025-06-04 09:03:54,342 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:04:13] 2025-06-04 09:03:54,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:04:13] 2025-06-04 09:03:54,372 | INFO     | did not find any defunct processes belonging to 3026610
[2025-06-04 05:04:13] 2025-06-04 09:03:54,402 | INFO     | did not find any defunct processes belonging to 3026610
[2025-06-04 05:04:13] 2025-06-04 09:03:54,402 | INFO     | ready for new job
[2025-06-04 05:04:13] 2025-06-04 09:03:54,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:04:13] 2025-06-04 09:03:54,407 | INFO     | **************************************
[2025-06-04 05:04:13] 2025-06-04 09:03:54,407 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:04:13] 2025-06-04 09:03:54,407 | INFO     | **************************************
[2025-06-04 05:04:13] 2025-06-04 09:03:54,408 | INFO     | 
[2025-06-04 05:04:13] 2025-06-04 09:03:54,434 | INFO     | architecture information:
[2025-06-04 05:04:13] 2025-06-04 09:03:54,435 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:04:13] 2025-06-04 09:03:54,464 | INFO     | cat /etc/os-release:
[2025-06-04 05:04:13] NAME="CentOS Linux"
[2025-06-04 05:04:13] VERSION="7 (Core)"
[2025-06-04 05:04:13] ID="centos"
[2025-06-04 05:04:13] ID_LIKE="rhel fedora"
[2025-06-04 05:04:13] VERSION_ID="7"
[2025-06-04 05:04:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:04:13] ANSI_COLOR="0;31"
[2025-06-04 05:04:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:04:13] HOME_URL="https://www.centos.org/"
[2025-06-04 05:04:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:04:13] 
[2025-06-04 05:04:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:04:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:04:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:04:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:04:13] 
[2025-06-04 05:04:13] 2025-06-04 09:03:54,464 | INFO     | **************************************
[2025-06-04 05:04:13] 2025-06-04 09:03:54,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 05:04:13] 2025-06-04 09:03:54,999 | INFO     | sufficient remaining disk space (75419877376 B)
[2025-06-04 05:04:13] 2025-06-04 09:03:55,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:04:13] 2025-06-04 09:03:55,001 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:04:13] 2025-06-04 09:03:55,001 | INFO     | update_server=False
[2025-06-04 05:04:13] 2025-06-04 09:03:55,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:04:13] 2025-06-04 09:03:55,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:04:13] 2025-06-04 09:03:55,002 | INFO     | aborting loop
[2025-06-04 05:04:13] 2025-06-04 09:03:55,002 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:04:13] 2025-06-04 09:03:55,003 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:04:13] 2025-06-04 09:03:55,003 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:04:13] 2025-06-04 09:03:55,003 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:04:13] 2025-06-04 09:03:55,186 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:04:13] 2025-06-04 09:03:55,196 | INFO     | all payload control threads have been joined
[2025-06-04 05:04:13] 2025-06-04 09:03:55,608 | INFO     | all job control threads have been joined
[2025-06-04 05:04:13] 2025-06-04 09:03:56,001 | INFO     | all data control threads have been joined
[2025-06-04 05:04:13] 2025-06-04 09:03:56,007 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,008 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,136 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,202 | INFO     | [payload] control thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,241 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,334 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,436 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,615 | INFO     | [job] control thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:56,659 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:04:13] 2025-06-04 09:03:56,824 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:57,007 | INFO     | [data] control thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:57,076 | INFO     | [job] validate thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:57,192 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:57,294 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:57,663 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:03:58,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:04:13] 2025-06-04 09:04:02,351 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:04:06,031 | INFO     | job.realtimelogging is not enabled
[2025-06-04 05:04:13] 2025-06-04 09:04:07,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:04:13] 2025-06-04 09:04:08,061 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654011434816)>', '<ExcThread(monitor, started 139653143328512)>']
[2025-06-04 05:04:13] 2025-06-04 09:04:08,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:04:13] 2025-06-04 09:04:08,068 | INFO     | [monitor] control thread has ended
[2025-06-04 05:04:13] 2025-06-04 09:04:13,086 | INFO     | all workflow threads have been joined
[2025-06-04 05:04:13] 2025-06-04 09:04:13,086 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:04:13] 2025-06-04 09:04:13,087 | INFO     | traces error code: 0
[2025-06-04 05:04:13] 2025-06-04 09:04:13,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:04:13] 2025-06-04 09:04:13,373 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:04:13] 2025-06-04 09:04:13,379 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:04:13] 2025-06-04 09:04:13,384 [wrapper] pilotpid: 3012476
[2025-06-04 05:04:13] 2025-06-04 09:04:13,391 [wrapper] Pilot exit status: 0
[2025-06-04 05:04:13] 2025-06-04 09:04:13,414 [wrapper] pandaids: 6678214473
[2025-06-04 05:04:13] 2025-06-04 09:04:13,576 [wrapper] cleanup supervisor_pilot 3531206 3012477
[2025-06-04 05:04:13] 2025-06-04 09:04:13,582 [wrapper] Test setup, not cleaning
[2025-06-04 05:04:13] 2025-06-04 09:04:13,588 [wrapper] apfmon messages muted
[2025-06-04 05:04:13] 2025-06-04 09:04:13,594 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:04:13] 2025-06-04 09:04:13,599 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:04:13]  *** Error codes and diagnostics ***
[2025-06-04 05:04:13]     "exeErrorCode": 0,
[2025-06-04 05:04:13]     "exeErrorDiag": "",
[2025-06-04 05:04:13]     "pilotErrorCode": 0,
[2025-06-04 05:04:13]     "pilotErrorDiag": "",
[2025-06-04 05:04:13]  *** Listing of results directory ***
[2025-06-04 05:04:13] total 391172
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:58 pilot3.tar.gz
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 20:36 queuedata.json
[2025-06-04 05:04:13] -rwx------. 1 boincer umatlas     37140 Jun  3 20:36 runpilot2-wrapper.sh
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas       100 Jun  4 01:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:04:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 01:19 run_atlas
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas       105 Jun  4 01:19 job.xml
[2025-06-04 05:04:13] -rw-r--r--. 2 boincer umatlas 215403382 Jun  4 01:19 EVNT.45006593._001965.pool.root.1
[2025-06-04 05:04:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 01:19 start_atlas.sh
[2025-06-04 05:04:13] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 01:19 shared
[2025-06-04 05:04:13] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 01:19 input.tar.gz
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas         0 Jun  4 01:19 boinc_lockfile
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 01:19 pandaJob.out
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas    986745 Jun  4 01:19 agis_schedconf.cvmfs.json
[2025-06-04 05:04:13] drwx------. 4 boincer umatlas      4096 Jun  4 01:19 pilot3
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas      6858 Jun  4 04:55 init_data.xml
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas 178224663 Jun  4 05:02 HITS.45006595._048988.pool.root.1
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas       531 Jun  4 05:02 boinc_task_state.xml
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas        95 Jun  4 05:03 pilot_heartbeat.json
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas      1034 Jun  4 05:03 memory_monitor_summary.json
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas   1603667 Jun  4 05:03 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas    387192 Jun  4 05:03 log.45006595._048988.job.log.tgz.1
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas      7717 Jun  4 05:03 heartbeat.json
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas      4548 Jun  4 05:04 pilotlog.txt
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas   1161539 Jun  4 05:04 log.45006595._048988.job.log.1
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 05:04 boinc_mmap_file
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas       357 Jun  4 05:04 output.list
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas       620 Jun  4 05:04 runtime_log
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas   1566720 Jun  4 05:04 result.tar.gz
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas        28 Jun  4 05:04 wrapper_checkpoint.txt
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas       659 Jun  4 05:04 sFHKDmdIrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmWNaKDmuZx3Om.diag
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas      8670 Jun  4 05:04 runtime_log.err
[2025-06-04 05:04:13] -rw-r--r--. 1 boincer umatlas     21000 Jun  4 05:04 stderr.txt
[2025-06-04 05:04:13] HITS file was successfully produced:
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas 178224663 Jun  4 05:02 shared/HITS.pool.root.1
[2025-06-04 05:04:13]  *** Contents of shared directory: ***
[2025-06-04 05:04:13] total 386460
[2025-06-04 05:04:13] -rw-r--r--. 2 boincer umatlas 215403382 Jun  4 01:19 ATLAS.root_0
[2025-06-04 05:04:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 01:19 start_atlas.sh
[2025-06-04 05:04:13] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 01:19 input.tar.gz
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas 178224663 Jun  4 05:02 HITS.pool.root.1
[2025-06-04 05:04:13] -rw-------. 1 boincer umatlas   1566720 Jun  4 05:04 result.tar.gz
05:04:35 (3008390): run_atlas exited; CPU time 95031.369873
05:04:35 (3008390): called boinc_finish(0)

</stderr_txt>
]]>

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