Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:53:52 (3876528): wrapper (7.7.26015): starting
06:53:52 (3876528): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 06:53:52] Arguments: --nthreads 12
[2025-06-04 06:53:52] Threads: 12
[2025-06-04 06:53:52] Checking for CVMFS
[2025-06-04 06:53:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:53:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:53:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:53:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:53:52] 2.12.7.0 29207 1574 74764 146771 1 187 3746736 4096001 12520 130560 17 20563515 99.999 394155 144 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 06:53:52] CVMFS is ok
[2025-06-04 06:53:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 06:53:52] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 06:53:52] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 06:53:52] Further information can be found at the LHC@home message board.
[2025-06-04 06:53:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:53:52] Checking for apptainer binary...
[2025-06-04 06:53:52] apptainer is not installed, using version from CVMFS
[2025-06-04 06:53:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:53:53] epyc7v12
[2025-06-04 06:53:53] apptainer works
[2025-06-04 06:53:53] Set ATHENA_PROC_NUMBER=12
[2025-06-04 06:53:53] Set ATHENA_CORE_NUMBER=12
[2025-06-04 06:53:53] Starting ATLAS job with PandaID=6678214419
[2025-06-04 06:53:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:40:42]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:40:42] 2025-06-04 08:40:20,611 | INFO     | extracted standard info from prmon json
[2025-06-04 08:40:42] 2025-06-04 08:40:20,611 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:40:42] 2025-06-04 08:40:20,611 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:40:42] 2025-06-04 08:40:20,611 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:40:42] 2025-06-04 08:40:20,612 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:40:42] 2025-06-04 08:40:20,614 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:40:42] 2025-06-04 08:40:20,615 | INFO     | sum of square deviations: 338806811.9611645
[2025-06-04 08:40:42] 2025-06-04 08:40:20,615 | INFO     | sum of deviations: 13928609196.834953
[2025-06-04 08:40:42] 2025-06-04 08:40:20,615 | INFO     | mean x: 1749023187.0194175
[2025-06-04 08:40:42] 2025-06-04 08:40:20,615 | INFO     | mean y: 2552305.5825242717
[2025-06-04 08:40:42] 2025-06-04 08:40:20,616 | INFO     | -- intersect: -71901139084.74483
[2025-06-04 08:40:42] 2025-06-04 08:40:20,616 | INFO     | intersect: -71901139084.74483
[2025-06-04 08:40:42] 2025-06-04 08:40:20,616 | INFO     | chi2: 2.5950637997391865
[2025-06-04 08:40:42] 2025-06-04 08:40:20,616 | INFO     | sum of square deviations: 291820494.4591833
[2025-06-04 08:40:42] 2025-06-04 08:40:20,617 | INFO     | sum of deviations: 20338843875.846935
[2025-06-04 08:40:42] 2025-06-04 08:40:20,617 | INFO     | mean x: 1749023034.5204082
[2025-06-04 08:40:42] 2025-06-04 08:40:20,617 | INFO     | mean y: 2572163.826530612
[2025-06-04 08:40:42] 2025-06-04 08:40:20,617 | INFO     | -- intersect: -121898072615.41194
[2025-06-04 08:40:42] 2025-06-04 08:40:20,621 | INFO     | intersect: -121898072615.41194
[2025-06-04 08:40:42] 2025-06-04 08:40:20,622 | INFO     | chi2: 1.7704068233666912
[2025-06-04 08:40:42] 2025-06-04 08:40:20,622 | INFO     | current chi2=1.7704068233666912 (change=31.777907597315195 %)
[2025-06-04 08:40:42] 2025-06-04 08:40:20,622 | INFO     | sum of square deviations: 249392401.9569894
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | sum of deviations: 19185176774.98925
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | mean x: 1749022882.0215054
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | mean y: 2568013.505376344
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | -- intersect: -134545689719.1851
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | intersect: -134545689719.1851
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | chi2: 1.7727457528161452
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | current chi2=1.7727457528161452 (change=-0.1321125415121366 %)
[2025-06-04 08:40:42] 2025-06-04 08:40:20,623 | INFO     | right removable region: 92
[2025-06-04 08:40:42] 2025-06-04 08:40:20,624 | INFO     | sum of square deviations: 291819274.4591833
[2025-06-04 08:40:42] 2025-06-04 08:40:20,624 | INFO     | sum of deviations: -5798072316.010204
[2025-06-04 08:40:42] 2025-06-04 08:40:20,624 | INFO     | mean x: 1749023339.5204082
[2025-06-04 08:40:42] 2025-06-04 08:40:20,624 | INFO     | mean y: 2615319.2551020407
[2025-06-04 08:40:42] 2025-06-04 08:40:20,624 | INFO     | -- intersect: 34753451513.070015
[2025-06-04 08:40:42] 2025-06-04 08:40:20,625 | INFO     | intersect: 34753451513.070015
[2025-06-04 08:40:42] 2025-06-04 08:40:20,625 | INFO     | chi2: 0.872021989250554
[2025-06-04 08:40:42] 2025-06-04 08:40:20,625 | INFO     | current chi2=0.872021989250554 (change=66.39689593226204 %)
[2025-06-04 08:40:42] 2025-06-04 08:40:20,629 | INFO     | sum of square deviations: 249389961.9569894
[2025-06-04 08:40:42] 2025-06-04 08:40:20,630 | INFO     | sum of deviations: -6054127226.559139
[2025-06-04 08:40:42] 2025-06-04 08:40:20,630 | INFO     | mean x: 1749023492.0215054
[2025-06-04 08:40:42] 2025-06-04 08:40:20,630 | INFO     | mean y: 2616203.2795698927
[2025-06-04 08:40:42] 2025-06-04 08:40:20,630 | INFO     | -- intersect: 42461465227.70469
[2025-06-04 08:40:42] 2025-06-04 08:40:20,630 | INFO     | intersect: 42461465227.70469
[2025-06-04 08:40:42] 2025-06-04 08:40:20,631 | INFO     | chi2: 0.8722474933938102
[2025-06-04 08:40:42] 2025-06-04 08:40:20,631 | INFO     | current chi2=0.8722474933938102 (change=-0.025859914776930032 %)
[2025-06-04 08:40:42] 2025-06-04 08:40:20,631 | INFO     | left removable region: 20
[2025-06-04 08:40:42] 2025-06-04 08:40:20,631 | INFO     | sum of square deviations: 115716879.94444431
[2025-06-04 08:40:42] 2025-06-04 08:40:20,631 | INFO     | sum of deviations: 568648783.8611112
[2025-06-04 08:40:42] 2025-06-04 08:40:20,632 | INFO     | mean x: 1749023461.5277777
[2025-06-04 08:40:42] 2025-06-04 08:40:20,632 | INFO     | mean y: 2641242.8194444445
[2025-06-04 08:40:42] 2025-06-04 08:40:20,632 | INFO     | -- intersect: -8592302423.306187
[2025-06-04 08:40:42] 2025-06-04 08:40:20,632 | INFO     | intersect: -8592302423.306187
[2025-06-04 08:40:42] 2025-06-04 08:40:20,632 | INFO     | chi2: 0.00011805982008409498
[2025-06-04 08:40:42] 2025-06-04 08:40:20,632 | INFO     | -- intersect: -8592302423.306187
[2025-06-04 08:40:42] 2025-06-04 08:40:20,632 | INFO     | current memory leak: 4.91 B/s (using 72 data points, chi2=0.00)
[2025-06-04 08:40:42] 2025-06-04 08:40:20,633 | INFO     | ..............................
[2025-06-04 08:40:42] 2025-06-04 08:40:20,633 | INFO     | . Timing measurements:
[2025-06-04 08:40:42] 2025-06-04 08:40:20,633 | INFO     | . get job = 0 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,637 | INFO     | . initial setup = 1 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,638 | INFO     | . payload setup = 8 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,638 | INFO     | . stage-in = 0 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,638 | INFO     | . payload execution = 6286 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,638 | INFO     | . stage-out = 3 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,638 | INFO     | . log creation = 1 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,638 | INFO     | ..............................
[2025-06-04 08:40:42] 2025-06-04 08:40:20,877 | INFO     | 
[2025-06-04 08:40:42] 2025-06-04 08:40:20,877 | INFO     | job summary report
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | --------------------------------------------------
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | PanDA job id: 6678214419
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | task id: 45006595
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | errors: (none)
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | pilot state: finished 
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | transexitcode: 0
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | exeerrorcode: 0
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | exeerrordiag: 
[2025-06-04 08:40:42] 2025-06-04 08:40:20,878 | INFO     | exitcode: 0
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | exitmsg: OK
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | cpuconsumptiontime: 39246 s
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | nevents: 400
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | neventsw: 0
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | pid: 3925555
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | pgrp: 3925555
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | corecount: 12
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | event service: False
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | sizes: {0: 2404981, 1: 2405236, 7: 2405442, 12: 2405470, 6298: 2432319, 6299: 2432318, 6303: 2441547, 6359: 2441661}
[2025-06-04 08:40:42] 2025-06-04 08:40:20,879 | INFO     | --------------------------------------------------
[2025-06-04 08:40:42] 2025-06-04 08:40:20,880 | INFO     | 
[2025-06-04 08:40:42] 2025-06-04 08:40:20,880 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/20
[2025-06-04 08:40:42] 2025-06-04 08:40:21,014 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,014 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:40:42] 2025-06-04 08:40:21,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:40:42] 2025-06-04 08:40:21,016 | INFO     | job 6678214419 has completed (purged errors)
[2025-06-04 08:40:42] 2025-06-04 08:40:21,016 | INFO     | overall cleanup function is called
[2025-06-04 08:40:42] 2025-06-04 08:40:22,029 | INFO     | --- collectZombieJob: --- 10, [3925555]
[2025-06-04 08:40:42] 2025-06-04 08:40:22,030 | INFO     | zombie collector waiting for pid 3925555
[2025-06-04 08:40:42] 2025-06-04 08:40:22,030 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:40:42] 2025-06-04 08:40:22,030 | INFO     | collected zombie processes
[2025-06-04 08:40:42] 2025-06-04 08:40:22,030 | INFO     | will attempt to kill all subprocesses of pid=3925555
[2025-06-04 08:40:42] 2025-06-04 08:40:23,231 | INFO     | process IDs to be killed: [3925555] (in reverse order)
[2025-06-04 08:40:42] 2025-06-04 08:40:25,533 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:40:42] 2025-06-04 08:40:25,534 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:40:42] 2025-06-04 08:40:25,568 | INFO     | did not find any defunct processes belonging to 3925555
[2025-06-04 08:40:42] 2025-06-04 08:40:25,601 | INFO     | did not find any defunct processes belonging to 3925555
[2025-06-04 08:40:42] 2025-06-04 08:40:25,605 | INFO     | ready for new job
[2025-06-04 08:40:42] 2025-06-04 08:40:25,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:40:42] 2025-06-04 08:40:25,607 | INFO     | **************************************
[2025-06-04 08:40:42] 2025-06-04 08:40:25,607 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:40:42] 2025-06-04 08:40:25,608 | INFO     | **************************************
[2025-06-04 08:40:42] 2025-06-04 08:40:25,608 | INFO     | 
[2025-06-04 08:40:42] 2025-06-04 08:40:25,648 | INFO     | architecture information:
[2025-06-04 08:40:42] 2025-06-04 08:40:25,658 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:40:42] 2025-06-04 08:40:25,722 | INFO     | cat /etc/os-release:
[2025-06-04 08:40:42] NAME="CentOS Linux"
[2025-06-04 08:40:42] VERSION="7 (Core)"
[2025-06-04 08:40:42] ID="centos"
[2025-06-04 08:40:42] ID_LIKE="rhel fedora"
[2025-06-04 08:40:42] VERSION_ID="7"
[2025-06-04 08:40:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:40:42] ANSI_COLOR="0;31"
[2025-06-04 08:40:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:40:42] HOME_URL="https://www.centos.org/"
[2025-06-04 08:40:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:40:42] 
[2025-06-04 08:40:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:40:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:40:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:40:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:40:42] 
[2025-06-04 08:40:42] 2025-06-04 08:40:25,722 | INFO     | **************************************
[2025-06-04 08:40:42] 2025-06-04 08:40:26,226 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/20
[2025-06-04 08:40:42] 2025-06-04 08:40:26,304 | INFO     | sufficient remaining disk space (312175755264 B)
[2025-06-04 08:40:42] 2025-06-04 08:40:26,304 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:40:42] 2025-06-04 08:40:26,304 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:40:42] 2025-06-04 08:40:26,305 | INFO     | update_server=False
[2025-06-04 08:40:42] 2025-06-04 08:40:26,305 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:40:42] 2025-06-04 08:40:26,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:40:42] 2025-06-04 08:40:26,306 | INFO     | aborting loop
[2025-06-04 08:40:42] 2025-06-04 08:40:26,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:40:42] 2025-06-04 08:40:26,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:40:42] 2025-06-04 08:40:26,645 | INFO     | all payload control threads have been joined
[2025-06-04 08:40:42] 2025-06-04 08:40:26,753 | INFO     | all job control threads have been joined
[2025-06-04 08:40:42] 2025-06-04 08:40:26,887 | INFO     | PID=3896905 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 08:40:42] 2025-06-04 08:40:26,887 | INFO     | .. there are 20 such processes running
[2025-06-04 08:40:42] 2025-06-04 08:40:26,887 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:40:42] 2025-06-04 08:40:26,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:40:42] 2025-06-04 08:40:26,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:40:42] 2025-06-04 08:40:27,310 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,314 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,318 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,341 | INFO     | all data control threads have been joined
[2025-06-04 08:40:42] 2025-06-04 08:40:27,498 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,522 | INFO     | [job] validate thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,621 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,649 | INFO     | [payload] control thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,761 | INFO     | [job] control thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:27,913 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:28,321 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:28,345 | INFO     | [data] control thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:28,377 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:28,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:28,530 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:28,717 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:29,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:40:42] 2025-06-04 08:40:33,829 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:40:42] 2025-06-04 08:40:35,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139978691024704)>', '<ExcThread(monitor, started 139978252203776)>']
[2025-06-04 08:40:42] 2025-06-04 08:40:35,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:40:42] 2025-06-04 08:40:35,942 | INFO     | [monitor] control thread has ended
[2025-06-04 08:40:42] 2025-06-04 08:40:40,417 | INFO     | all workflow threads have been joined
[2025-06-04 08:40:42] 2025-06-04 08:40:40,418 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:40:42] 2025-06-04 08:40:40,418 | INFO     | traces error code: 0
[2025-06-04 08:40:42] 2025-06-04 08:40:40,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:40:42] 2025-06-04 08:40:40,861 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:40:42] 2025-06-04 08:40:40,902 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:40:42] 2025-06-04 08:40:40,937 [wrapper] pilotpid: 3896905
[2025-06-04 08:40:42] 2025-06-04 08:40:40,997 [wrapper] Pilot exit status: 0
[2025-06-04 08:40:42] 2025-06-04 08:40:41,149 [wrapper] pandaids: 6678214419
[2025-06-04 08:40:42] 2025-06-04 08:40:41,502 [wrapper] cleanup supervisor_pilot  112933 3896908
[2025-06-04 08:40:42] 2025-06-04 08:40:41,523 [wrapper] Test setup, not cleaning
[2025-06-04 08:40:42] 2025-06-04 08:40:41,551 [wrapper] apfmon messages muted
[2025-06-04 08:40:42] 2025-06-04 08:40:41,586 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:40:42] 2025-06-04 08:40:41,630 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:40:42]  *** Error codes and diagnostics ***
[2025-06-04 08:40:42]     "exeErrorCode": 0,
[2025-06-04 08:40:42]     "exeErrorDiag": "",
[2025-06-04 08:40:42]     "pilotErrorCode": 0,
[2025-06-04 08:40:42]     "pilotErrorDiag": "",
[2025-06-04 08:40:42]  *** Listing of results directory ***
[2025-06-04 08:40:42] total 387132
[2025-06-04 08:40:42] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:58 pilot3.tar.gz
[2025-06-04 08:40:42] -rw-r--r-- 1 boinc boinc      5111 Jun  4 00:36 queuedata.json
[2025-06-04 08:40:42] -rwx------ 1 boinc boinc     37140 Jun  4 00:36 runpilot2-wrapper.sh
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc       100 Jun  4 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:40:42] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 06:53 run_atlas
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc       105 Jun  4 06:53 job.xml
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc      6951 Jun  4 06:53 init_data.xml
[2025-06-04 08:40:42] -rw-r--r-- 2 boinc boinc 216197373 Jun  4 06:53 EVNT.45006593._001963.pool.root.1
[2025-06-04 08:40:42] -rw-r--r-- 2 boinc boinc     15093 Jun  4 06:53 start_atlas.sh
[2025-06-04 08:40:42] drwxrwx--x 2 boinc boinc      4096 Jun  4 06:53 shared
[2025-06-04 08:40:42] -rw-r--r-- 2 boinc boinc    508879 Jun  4 06:53 input.tar.gz
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc         0 Jun  4 06:53 boinc_lockfile
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc      2525 Jun  4 06:53 pandaJob.out
[2025-06-04 08:40:42] -rw------- 1 boinc boinc    986745 Jun  4 06:54 agis_schedconf.cvmfs.json
[2025-06-04 08:40:42] -rw------- 1 boinc boinc   1603667 Jun  4 06:54 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:40:42] drwx------ 4 boinc boinc      4096 Jun  4 06:54 pilot3
[2025-06-04 08:40:42] -rw------- 1 boinc boinc 174481988 Jun  4 08:38 HITS.45006595._048934.pool.root.1
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc       530 Jun  4 08:38 boinc_task_state.xml
[2025-06-04 08:40:42] -rw------- 1 boinc boinc      1023 Jun  4 08:39 memory_monitor_summary.json
[2025-06-04 08:40:42] -rw------- 1 boinc boinc    368863 Jun  4 08:39 log.45006595._048934.job.log.tgz.1
[2025-06-04 08:40:42] -rw------- 1 boinc boinc        95 Jun  4 08:40 pilot_heartbeat.json
[2025-06-04 08:40:42] -rw------- 1 boinc boinc      7645 Jun  4 08:40 heartbeat.json
[2025-06-04 08:40:42] -rw------- 1 boinc boinc      4773 Jun  4 08:40 pilotlog.txt
[2025-06-04 08:40:42] -rw------- 1 boinc boinc    581233 Jun  4 08:40 log.45006595._048934.job.log.1
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 08:40 boinc_mmap_file
[2025-06-04 08:40:42] -rw------- 1 boinc boinc       357 Jun  4 08:40 output.list
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc       620 Jun  4 08:40 runtime_log
[2025-06-04 08:40:42] -rw------- 1 boinc boinc    972800 Jun  4 08:40 result.tar.gz
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc      8977 Jun  4 08:40 runtime_log.err
[2025-06-04 08:40:42] -rw------- 1 boinc boinc       651 Jun  4 08:40 EpGNDmcIrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmqMaKDm6FZNVn.diag
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc        27 Jun  4 08:40 wrapper_checkpoint.txt
[2025-06-04 08:40:42] -rw-rw-r-- 1 boinc boinc     21117 Jun  4 08:40 stderr.txt
[2025-06-04 08:40:42] HITS file was successfully produced:
[2025-06-04 08:40:42] -rw------- 1 boinc boinc 174481988 Jun  4 08:38 shared/HITS.pool.root.1
[2025-06-04 08:40:42]  *** Contents of shared directory: ***
[2025-06-04 08:40:42] total 383004
[2025-06-04 08:40:42] -rw-r--r-- 2 boinc boinc 216197373 Jun  4 06:53 ATLAS.root_0
[2025-06-04 08:40:42] -rw-r--r-- 2 boinc boinc     15093 Jun  4 06:53 start_atlas.sh
[2025-06-04 08:40:42] -rw-r--r-- 2 boinc boinc    508879 Jun  4 06:53 input.tar.gz
[2025-06-04 08:40:42] -rw------- 1 boinc boinc 174481988 Jun  4 08:38 HITS.pool.root.1
[2025-06-04 08:40:42] -rw------- 1 boinc boinc    972800 Jun  4 08:40 result.tar.gz
08:40:44 (3876528): run_atlas exited; CPU time 39559.737784
08:40:44 (3876528): called boinc_finish(0)

</stderr_txt>
]]>

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