Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:48:38 (680358): wrapper (7.7.26015): starting
16:48:38 (680358): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 16:48:38] Arguments: --nthreads 3
[2025-06-04 16:48:38] Threads: 3
[2025-06-04 16:48:38] Checking for CVMFS
[2025-06-04 16:48:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:48:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:48:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:48:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:48:38] 2.9.2.0 9871 2021 81076 146782 2 56 24436111 36864001 0 130560 0 1806476 99.993 389337 9503 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 16:48:38] CVMFS is ok
[2025-06-04 16:48:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 16:48:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 16:48:38] Further information can be found at the LHC@home message board.
[2025-06-04 16:48:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:48:38] Checking for apptainer binary...
[2025-06-04 16:48:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:48:38] Running /usr/bin/apptainer --version
[2025-06-04 16:48:38] apptainer version 1.3.6-6.1
[2025-06-04 16:48:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:48:39] atlasA091
[2025-06-04 16:48:39] apptainer works
[2025-06-04 16:48:39] Set ATHENA_PROC_NUMBER=3
[2025-06-04 16:48:39] Set ATHENA_CORE_NUMBER=3
[2025-06-04 16:48:39] Starting ATLAS job with PandaID=6678074685
[2025-06-04 16:48:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:02:21]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:02:21]  is_tar=False
[2025-06-04 18:02:21]  lfn=log.45006595._045972.job.log.tgz.1
[2025-06-04 18:02:21]  mtime=0
[2025-06-04 18:02:21]  protocol_id=None
[2025-06-04 18:02:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 18:02:21]  replicas=None
[2025-06-04 18:02:21]  scope=mc23_13p6TeV
[2025-06-04 18:02:21]  status=None
[2025-06-04 18:02:21]  status_code=0
[2025-06-04 18:02:21]  storage_token=
[2025-06-04 18:02:21]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678074685/log.45006595._045972.job.log.tgz.1
[2025-06-04 18:02:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/4a/log.45006595._045972.job.log.tgz.1
[2025-06-04 18:02:21]  workdir=None
[2025-06-04 18:02:21] ]
[2025-06-04 18:02:21] 2025-06-04 16:02:00,242 | INFO     | transferring file log.45006595._045972.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678074685/log.45006595._045972.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 18:02:21] 2025-06-04 16:02:00,242 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678074685/log.45006595._045972.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0459
[2025-06-04 18:02:21] 2025-06-04 16:02:00,255 | INFO     | adding to output.list: log.45006595._045972.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/4a/log.45006595._045972.job.log.tg
[2025-06-04 18:02:21] 2025-06-04 16:02:00,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 18:02:21] 2025-06-04 16:02:00,255 | INFO     | summary of transferred files:
[2025-06-04 18:02:21] 2025-06-04 16:02:00,255 | INFO     |  -- lfn=log.45006595._045972.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 18:02:21] 2025-06-04 16:02:00,256 | INFO     | stage-out finished correctly
[2025-06-04 18:02:21] 2025-06-04 16:02:01,313 | WARNING  | process 690491 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 18:02:21] 2025-06-04 16:02:01,314 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678074685/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:02:21] 2025-06-04 16:02:01,348 | INFO     | number of running child processes to parent process 690491: 1
[2025-06-04 18:02:21] 2025-06-04 16:02:01,348 | INFO     | maximum number of monitored processes: 6
[2025-06-04 18:02:21] 2025-06-04 16:02:01,381 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 18:02:21] 2025-06-04 16:02:02,859 | INFO     | PID=684002 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 18:02:21] 2025-06-04 16:02:03,852 | INFO     | monitor loop #339: job 0:6678074685 is in state 'finished'
[2025-06-04 18:02:21] 2025-06-04 16:02:03,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:02:21] 2025-06-04 16:02:04,015 | INFO     | job 6678074685 has state=finished
[2025-06-04 18:02:21] 2025-06-04 16:02:04,015 | INFO     | preparing for final server update for job 6678074685 in state='finished'
[2025-06-04 18:02:21] 2025-06-04 16:02:04,016 | INFO     | this job has now completed (state=finished)
[2025-06-04 18:02:21] 2025-06-04 16:02:04,016 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 18:02:21] 2025-06-04 16:02:04,016 | INFO     | log transfer has been attempted: DONE
[2025-06-04 18:02:21] 2025-06-04 16:02:04,016 | INFO     | job 6678074685 has finished - writing final server update
[2025-06-04 18:02:21] 2025-06-04 16:02:04,016 | INFO     | total number of processed events: 400 (read)
[2025-06-04 18:02:21] 2025-06-04 16:02:04,017 | INFO     | executing command: lscpu
[2025-06-04 18:02:21] 2025-06-04 16:02:04,033 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 18:02:21] 2025-06-04 16:02:06,355 | INFO     | monitor loop #340: job 0:6678074685 is in state 'finished'
[2025-06-04 18:02:21] 2025-06-04 16:02:06,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 18:02:21] 2025-06-04 16:02:07,594 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 18:02:21] 2025-06-04 16:02:07,595 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678074685/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:02:21] 2025-06-04 16:02:07,595 | INFO     | extracted standard info from prmon json
[2025-06-04 18:02:21] 2025-06-04 16:02:07,595 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:02:21] 2025-06-04 16:02:07,595 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:02:21] 2025-06-04 16:02:07,595 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:02:21] 2025-06-04 16:02:07,595 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | sum of square deviations: 85136480.0
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | sum of deviations: -2803184240.0000005
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | mean x: 1749050802.0
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | mean y: 2395427.4615384615
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | -- intersect: 57591241514.65896
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | intersect: 57591241514.65896
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | chi2: 0.011768183542460684
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | -- intersect: 57591241514.65896
[2025-06-04 18:02:21] 2025-06-04 16:02:07,596 | INFO     | current memory leak: -32.93 B/s (using 65 data points, chi2=0.01)
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | ..............................
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . Timing measurements:
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . get job = 0 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . initial setup = 1 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . payload setup = 3 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . stage-in = 0 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . payload execution = 4374 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . stage-out = 0 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | . log creation = 0 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,597 | INFO     | ..............................
[2025-06-04 18:02:21] 2025-06-04 16:02:07,628 | INFO     | 
[2025-06-04 18:02:21] 2025-06-04 16:02:07,628 | INFO     | job summary report
[2025-06-04 18:02:21] 2025-06-04 16:02:07,628 | INFO     | --------------------------------------------------
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | PanDA job id: 6678074685
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | task id: 45006595
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | errors: (none)
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | pilot state: finished 
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | transexitcode: 0
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | exeerrorcode: 0
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | exeerrordiag: 
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | exitcode: 0
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | exitmsg: OK
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | cpuconsumptiontime: 12426 s
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | nevents: 400
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | neventsw: 0
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | pid: 690491
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | pgrp: 690491
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | corecount: 3
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | event service: False
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | sizes: {0: 2397345, 2: 2397551, 10: 2397579, 4381: 2423684, 4382: 2432631, 4383: 2432687, 4390: 2432985}
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | --------------------------------------------------
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | 
[2025-06-04 18:02:21] 2025-06-04 16:02:07,629 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | job 6678074685 has completed (purged errors)
[2025-06-04 18:02:21] 2025-06-04 16:02:07,643 | INFO     | overall cleanup function is called
[2025-06-04 18:02:21] 2025-06-04 16:02:08,650 | INFO     | --- collectZombieJob: --- 10, [690491]
[2025-06-04 18:02:21] 2025-06-04 16:02:08,650 | INFO     | zombie collector waiting for pid 690491
[2025-06-04 18:02:21] 2025-06-04 16:02:08,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:02:21] 2025-06-04 16:02:08,650 | INFO     | collected zombie processes
[2025-06-04 18:02:21] 2025-06-04 16:02:08,650 | INFO     | will attempt to kill all subprocesses of pid=690491
[2025-06-04 18:02:21] 2025-06-04 16:02:08,691 | INFO     | process IDs to be killed: [690491] (in reverse order)
[2025-06-04 18:02:21] 2025-06-04 16:02:08,716 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:02:21] 2025-06-04 16:02:08,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:02:21] 2025-06-04 16:02:08,718 | INFO     | did not find any defunct processes belonging to 690491
[2025-06-04 18:02:21] 2025-06-04 16:02:08,719 | INFO     | did not find any defunct processes belonging to 690491
[2025-06-04 18:02:21] 2025-06-04 16:02:08,719 | INFO     | ready for new job
[2025-06-04 18:02:21] 2025-06-04 16:02:08,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:02:21] 2025-06-04 16:02:08,720 | INFO     | **************************************
[2025-06-04 18:02:21] 2025-06-04 16:02:08,720 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:02:21] 2025-06-04 16:02:08,720 | INFO     | **************************************
[2025-06-04 18:02:21] 2025-06-04 16:02:08,720 | INFO     | 
[2025-06-04 18:02:21] 2025-06-04 16:02:08,720 | INFO     | architecture information:
[2025-06-04 18:02:21] 2025-06-04 16:02:08,720 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:02:21] 2025-06-04 16:02:08,729 | INFO     | cat /etc/os-release:
[2025-06-04 18:02:21] NAME="CentOS Linux"
[2025-06-04 18:02:21] VERSION="7 (Core)"
[2025-06-04 18:02:21] ID="centos"
[2025-06-04 18:02:21] ID_LIKE="rhel fedora"
[2025-06-04 18:02:21] VERSION_ID="7"
[2025-06-04 18:02:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:02:21] ANSI_COLOR="0;31"
[2025-06-04 18:02:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:02:21] HOME_URL="https://www.centos.org/"
[2025-06-04 18:02:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:02:21] 
[2025-06-04 18:02:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:02:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:02:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:02:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:02:21] 
[2025-06-04 18:02:21] 2025-06-04 16:02:08,730 | INFO     | **************************************
[2025-06-04 18:02:21] 2025-06-04 16:02:09,233 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 18:02:21] 2025-06-04 16:02:09,245 | INFO     | sufficient remaining disk space (376328683520 B)
[2025-06-04 18:02:21] 2025-06-04 16:02:09,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:02:21] 2025-06-04 16:02:09,245 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:02:21] 2025-06-04 16:02:09,245 | INFO     | update_server=False
[2025-06-04 18:02:21] 2025-06-04 16:02:09,245 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:02:21] 2025-06-04 16:02:09,245 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:02:21] 2025-06-04 16:02:09,246 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:02:21] 2025-06-04 16:02:09,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:02:21] 2025-06-04 16:02:09,246 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:02:21] 2025-06-04 16:02:09,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:02:21] 2025-06-04 16:02:09,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:02:21] 2025-06-04 16:02:09,582 | INFO     | all payload control threads have been joined
[2025-06-04 18:02:21] 2025-06-04 16:02:09,864 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:02:21] 2025-06-04 16:02:09,864 | INFO     | aborting loop
[2025-06-04 18:02:21] 2025-06-04 16:02:10,177 | INFO     | all data control threads have been joined
[2025-06-04 18:02:21] 2025-06-04 16:02:10,251 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:10,251 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:10,571 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:10,588 | INFO     | [payload] control thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:10,709 | INFO     | all job control threads have been joined
[2025-06-04 18:02:21] 2025-06-04 16:02:10,866 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:10,879 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:10,918 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:10,925 | INFO     | [job] validate thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,036 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,183 | INFO     | [data] control thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,252 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,302 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,564 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,613 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,715 | INFO     | [job] control thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:11,923 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:02:21] 2025-06-04 16:02:15,930 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:02:21] 2025-06-04 16:02:16,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631752181568)>', '<ExcThread(monitor, started 139631098050304)>']
[2025-06-04 18:02:21] 2025-06-04 16:02:17,288 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:02:21] 2025-06-04 16:02:17,289 | INFO     | [monitor] control thread has ended
[2025-06-04 18:02:21] 2025-06-04 16:02:21,541 | INFO     | all workflow threads have been joined
[2025-06-04 18:02:21] 2025-06-04 16:02:21,542 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:02:21] 2025-06-04 16:02:21,542 | INFO     | traces error code: 0
[2025-06-04 18:02:21] 2025-06-04 16:02:21,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:02:21] 2025-06-04 16:02:21,593 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:02:21] 2025-06-04 16:02:21,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:02:21] 2025-06-04 16:02:21,598 [wrapper] pilotpid: 684002
[2025-06-04 18:02:21] 2025-06-04 16:02:21,601 [wrapper] Pilot exit status: 0
[2025-06-04 18:02:21] 2025-06-04 16:02:21,608 [wrapper] pandaids: 6678074685
[2025-06-04 18:02:21] 2025-06-04 16:02:21,625 [wrapper] cleanup supervisor_pilot  699907 684003
[2025-06-04 18:02:21] 2025-06-04 16:02:21,628 [wrapper] Test setup, not cleaning
[2025-06-04 18:02:21] 2025-06-04 16:02:21,631 [wrapper] apfmon messages muted
[2025-06-04 18:02:21] 2025-06-04 16:02:21,633 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:02:21] 2025-06-04 16:02:21,636 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:02:21]  *** Error codes and diagnostics ***
[2025-06-04 18:02:21]     "exeErrorCode": 0,
[2025-06-04 18:02:21]     "exeErrorDiag": "",
[2025-06-04 18:02:21]     "pilotErrorCode": 0,
[2025-06-04 18:02:21]     "pilotErrorDiag": "",
[2025-06-04 18:02:21]  *** Listing of results directory ***
[2025-06-04 18:02:21] total 387676
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:15 pilot3.tar.gz
[2025-06-04 18:02:21] -rwx------ 1 boinc boinc     37140 Jun  3 23:32 runpilot2-wrapper.sh
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:32 queuedata.json
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc       100 Jun  4 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:02:21] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 16:48 run_atlas
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc       105 Jun  4 16:48 job.xml
[2025-06-04 18:02:21] -rw-r--r-- 2 boinc boinc 214665502 Jun  4 16:48 EVNT.45006593._001844.pool.root.1
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc      6927 Jun  4 16:48 init_data.xml
[2025-06-04 18:02:21] drwxrwx--x 2 boinc boinc      4096 Jun  4 16:48 shared
[2025-06-04 18:02:21] -rw-r--r-- 2 boinc boinc    508875 Jun  4 16:48 input.tar.gz
[2025-06-04 18:02:21] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:48 start_atlas.sh
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc         0 Jun  4 16:48 boinc_lockfile
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc      2525 Jun  4 16:48 pandaJob.out
[2025-06-04 18:02:21] -rw------- 1 boinc boinc    986819 Jun  4 16:48 agis_schedconf.cvmfs.json
[2025-06-04 18:02:21] -rw------- 1 boinc boinc   1598969 Jun  4 16:48 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:02:21] drwx------ 4 boinc boinc      4096 Jun  4 16:48 pilot3
[2025-06-04 18:02:21] -rw------- 1 boinc boinc 177171687 Jun  4 18:01 HITS.45006595._045972.pool.root.1
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc       529 Jun  4 18:01 boinc_task_state.xml
[2025-06-04 18:02:21] -rw------- 1 boinc boinc      1015 Jun  4 18:01 memory_monitor_summary.json
[2025-06-04 18:02:21] -rw------- 1 boinc boinc    223064 Jun  4 18:02 log.45006595._045972.job.log.tgz.1
[2025-06-04 18:02:21] -rw------- 1 boinc boinc        95 Jun  4 18:02 pilot_heartbeat.json
[2025-06-04 18:02:21] -rw------- 1 boinc boinc      7650 Jun  4 18:02 heartbeat.json
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc      8192 Jun  4 18:02 boinc_mmap_file
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc        27 Jun  4 18:02 wrapper_checkpoint.txt
[2025-06-04 18:02:21] -rw------- 1 boinc boinc      4480 Jun  4 18:02 pilotlog.txt
[2025-06-04 18:02:21] -rw------- 1 boinc boinc    432128 Jun  4 18:02 log.45006595._045972.job.log.1
[2025-06-04 18:02:21] -rw------- 1 boinc boinc       357 Jun  4 18:02 output.list
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc       620 Jun  4 18:02 runtime_log
[2025-06-04 18:02:21] -rw------- 1 boinc boinc    675840 Jun  4 18:02 result.tar.gz
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc      8748 Jun  4 18:02 runtime_log.err
[2025-06-04 18:02:21] -rw------- 1 boinc boinc       661 Jun  4 18:02 PrvKDmHQog7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7yZKDmZ8aSCn.diag
[2025-06-04 18:02:21] -rw-r--r-- 1 boinc boinc     21611 Jun  4 18:02 stderr.txt
[2025-06-04 18:02:21] HITS file was successfully produced:
[2025-06-04 18:02:21] -rw------- 1 boinc boinc 177171687 Jun  4 18:01 shared/HITS.pool.root.1
[2025-06-04 18:02:21]  *** Contents of shared directory: ***
[2025-06-04 18:02:21] total 383840
[2025-06-04 18:02:21] -rw-r--r-- 2 boinc boinc 214665502 Jun  4 16:48 ATLAS.root_0
[2025-06-04 18:02:21] -rw-r--r-- 2 boinc boinc    508875 Jun  4 16:48 input.tar.gz
[2025-06-04 18:02:21] -rw-r--r-- 2 boinc boinc     15093 Jun  4 16:48 start_atlas.sh
[2025-06-04 18:02:21] -rw------- 1 boinc boinc 177171687 Jun  4 18:01 HITS.pool.root.1
[2025-06-04 18:02:21] -rw------- 1 boinc boinc    675840 Jun  4 18:02 result.tar.gz
18:02:22 (680358): run_atlas exited; CPU time 12438.372702
18:02:22 (680358): called boinc_finish(0)

</stderr_txt>
]]>

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