Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:01:46 (1083966): wrapper (7.7.26015): starting
18:01:46 (1083966): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 18:01:46] Arguments: --nthreads 4
[2025-06-05 18:01:46] Threads: 4
[2025-06-05 18:01:46] Checking for CVMFS
[2025-06-05 18:01:46] No cvmfs_config command found, will try listing directly
[2025-06-05 18:01:46] CVMFS is ok
[2025-06-05 18:01:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 18:01:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 18:01:46] Further information can be found at the LHC@home message board.
[2025-06-05 18:01:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 18:01:46] Checking for apptainer binary...
[2025-06-05 18:01:46] which: no apptainer in ((null))
[2025-06-05 18:01:46] apptainer is not installed, using version from CVMFS
[2025-06-05 18:01:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 18:01:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-05 18:01:46] apptainer works
[2025-06-05 18:01:46] Set ATHENA_PROC_NUMBER=4
[2025-06-05 18:01:46] Set ATHENA_CORE_NUMBER=4
[2025-06-05 18:01:46] Starting ATLAS job with PandaID=6678150226
[2025-06-05 18:01:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:42:26 (13528): wrapper (7.7.26015): starting
18:42:26 (13528): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 18:42:26] Arguments: --nthreads 4
[2025-06-05 18:42:26] Threads: 4
[2025-06-05 18:42:26] This job has been restarted, cleaning up previous attempt
[2025-06-05 18:42:26] Checking for CVMFS
[2025-06-05 18:42:26] No cvmfs_config command found, will try listing directly
[2025-06-05 18:42:26] CVMFS is ok
[2025-06-05 18:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 18:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 18:42:26] Further information can be found at the LHC@home message board.
[2025-06-05 18:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 18:42:26] Checking for apptainer binary...
[2025-06-05 18:42:26] which: no apptainer in ((null))
[2025-06-05 18:42:26] apptainer is not installed, using version from CVMFS
[2025-06-05 18:42:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 18:42:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-05 18:42:27] apptainer works
[2025-06-05 18:42:27] Set ATHENA_PROC_NUMBER=4
[2025-06-05 18:42:27] Set ATHENA_CORE_NUMBER=4
[2025-06-05 18:42:27] Starting ATLAS job with PandaID=6678150226
[2025-06-05 18:42:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 20:56:28]  *** The last 200 lines of the pilot log: ***
[2025-06-05 20:56:28] 2025-06-05 18:54:55,923 | INFO     | using path: /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-6678150226/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 20:56:28] 2025-06-05 18:54:55,923 | INFO     | extracted standard info from prmon json
[2025-06-05 20:56:28] 2025-06-05 18:54:55,924 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 20:56:28] 2025-06-05 18:54:55,924 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 20:56:28] 2025-06-05 18:54:55,924 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 20:56:28] 2025-06-05 18:54:55,924 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 20:56:28] 2025-06-05 18:54:55,927 | INFO     | fitting pss+swap vs Time
[2025-06-05 20:56:28] 2025-06-05 18:54:55,927 | INFO     | sum of square deviations: 681212772.5
[2025-06-05 20:56:28] 2025-06-05 18:54:55,928 | INFO     | sum of deviations: 11019985408.500004
[2025-06-05 20:56:28] 2025-06-05 18:54:55,928 | INFO     | mean x: 1749145728.5
[2025-06-05 20:56:28] 2025-06-05 18:54:55,928 | INFO     | mean y: 2269525.0692307693
[2025-06-05 20:56:28] 2025-06-05 18:54:55,928 | INFO     | -- intersect: -28293677326.705498
[2025-06-05 20:56:28] 2025-06-05 18:54:55,928 | INFO     | intersect: -28293677326.705498
[2025-06-05 20:56:28] 2025-06-05 18:54:55,929 | INFO     | chi2: 2.351358807107395
[2025-06-05 20:56:28] 2025-06-05 18:54:55,929 | INFO     | sum of square deviations: 605592750.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,929 | INFO     | sum of deviations: 18379731574.999996
[2025-06-05 20:56:28] 2025-06-05 18:54:55,930 | INFO     | mean x: 1749145576.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,930 | INFO     | mean y: 2283852.4
[2025-06-05 20:56:28] 2025-06-05 18:54:55,930 | INFO     | -- intersect: -53084260153.41704
[2025-06-05 20:56:28] 2025-06-05 18:54:55,930 | INFO     | intersect: -53084260153.41704
[2025-06-05 20:56:28] 2025-06-05 18:54:55,930 | INFO     | chi2: 1.5416250974206833
[2025-06-05 20:56:28] 2025-06-05 18:54:55,930 | INFO     | current chi2=1.5416250974206833 (change=34.43684167806076 %)
[2025-06-05 20:56:28] 2025-06-05 18:54:55,930 | INFO     | sum of square deviations: 535786790.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,931 | INFO     | sum of deviations: 17500504476.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,931 | INFO     | mean x: 1749145423.5
[2025-06-05 20:56:28] 2025-06-05 18:54:55,931 | INFO     | mean y: 2281930.7666666666
[2025-06-05 20:56:28] 2025-06-05 18:54:55,931 | INFO     | -- intersect: -57130383309.33129
[2025-06-05 20:56:28] 2025-06-05 18:54:55,931 | INFO     | intersect: -57130383309.33129
[2025-06-05 20:56:28] 2025-06-05 18:54:55,932 | INFO     | chi2: 1.5438553255958243
[2025-06-05 20:56:28] 2025-06-05 18:54:55,932 | INFO     | current chi2=1.5438553255958243 (change=-0.14466734998492092 %)
[2025-06-05 20:56:28] 2025-06-05 18:54:55,932 | INFO     | right removable region: 119
[2025-06-05 20:56:28] 2025-06-05 18:54:55,932 | INFO     | sum of square deviations: 605592750.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,933 | INFO     | sum of deviations: -6918590049.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,933 | INFO     | mean x: 1749145881.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,933 | INFO     | mean y: 2305006.192
[2025-06-05 20:56:28] 2025-06-05 18:54:55,933 | INFO     | -- intersect: 19985409636.384384
[2025-06-05 20:56:28] 2025-06-05 18:54:55,933 | INFO     | intersect: 19985409636.384384
[2025-06-05 20:56:28] 2025-06-05 18:54:55,933 | INFO     | chi2: 0.8474492543201392
[2025-06-05 20:56:28] 2025-06-05 18:54:55,933 | INFO     | current chi2=0.8474492543201392 (change=63.95916898099196 %)
[2025-06-05 20:56:28] 2025-06-05 18:54:55,934 | INFO     | sum of square deviations: 535786790.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,934 | INFO     | sum of deviations: -7143456697.499999
[2025-06-05 20:56:28] 2025-06-05 18:54:55,934 | INFO     | mean x: 1749146033.5
[2025-06-05 20:56:28] 2025-06-05 18:54:55,934 | INFO     | mean y: 2305491.775
[2025-06-05 20:56:28] 2025-06-05 18:54:55,935 | INFO     | -- intersect: 23323053933.354034
[2025-06-05 20:56:28] 2025-06-05 18:54:55,935 | INFO     | intersect: 23323053933.354034
[2025-06-05 20:56:28] 2025-06-05 18:54:55,935 | INFO     | chi2: 0.8476604073580405
[2025-06-05 20:56:28] 2025-06-05 18:54:55,935 | INFO     | current chi2=0.8476604073580405 (change=-0.024916304643008844 %)
[2025-06-05 20:56:28] 2025-06-05 18:54:55,935 | INFO     | left removable region: 20
[2025-06-05 20:56:28] 2025-06-05 18:54:55,935 | INFO     | sum of square deviations: 300842850.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | sum of deviations: 223405911.9999997
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | mean x: 1749146003.0
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | mean y: 2322032.9191919193
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | -- intersect: -1296593856.294626
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | intersect: -1296593856.294626
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | chi2: 0.0010923541053669175
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | -- intersect: -1296593856.294626
[2025-06-05 20:56:28] 2025-06-05 18:54:55,936 | INFO     | current memory leak: 0.74 B/s (using 99 data points, chi2=0.00)
[2025-06-05 20:56:28] 2025-06-05 18:54:55,937 | INFO     | ..............................
[2025-06-05 20:56:28] 2025-06-05 18:54:55,937 | INFO     | . Timing measurements:
[2025-06-05 20:56:28] 2025-06-05 18:54:55,937 | INFO     | . get job = 0 s
[2025-06-05 20:56:28] 2025-06-05 18:54:55,937 | INFO     | . initial setup = 1 s
[2025-06-05 20:56:28] 2025-06-05 18:54:55,937 | INFO     | . payload setup = 8 s
[2025-06-05 20:56:28] 2025-06-05 18:54:55,937 | INFO     | . stage-in = 0 s
[2025-06-05 20:56:28] 2025-06-05 18:54:55,938 | INFO     | . payload execution = 7896 s
[2025-06-05 20:56:28] 2025-06-05 18:54:55,938 | INFO     | . stage-out = 0 s
[2025-06-05 20:56:28] 2025-06-05 18:54:55,938 | INFO     | . log creation = 0 s
[2025-06-05 20:56:28] 2025-06-05 18:54:55,938 | INFO     | ..............................
[2025-06-05 20:56:28] 2025-06-05 18:54:56,039 | INFO     | 
[2025-06-05 20:56:28] 2025-06-05 18:54:56,039 | INFO     | job summary report
[2025-06-05 20:56:28] 2025-06-05 18:54:56,039 | INFO     | --------------------------------------------------
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | PanDA job id: 6678150226
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | task id: 45006595
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | errors: (none)
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | pilot state: finished 
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | transexitcode: 0
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | exeerrorcode: 0
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | exeerrordiag: 
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | exitcode: 0
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | exitmsg: OK
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | cpuconsumptiontime: 29778 s
[2025-06-05 20:56:28] 2025-06-05 18:54:56,040 | INFO     | nevents: 400
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | neventsw: 0
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | pid: 305545
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | pgrp: 305545
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | corecount: 4
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | event service: False
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | sizes: {0: 2397302, 5: 2397508, 11: 2397564, 7909: 2425249, 7910: 2434212, 7912: 2434268, 7920: 2434566}
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | --------------------------------------------------
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | 
[2025-06-05 20:56:28] 2025-06-05 18:54:56,041 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/0
[2025-06-05 20:56:28] 2025-06-05 18:54:56,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,067 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 20:56:28] 2025-06-05 18:54:56,068 | INFO     | job 6678150226 has completed (purged errors)
[2025-06-05 20:56:28] 2025-06-05 18:54:56,069 | INFO     | overall cleanup function is called
[2025-06-05 20:56:28] 2025-06-05 18:54:57,077 | INFO     | --- collectZombieJob: --- 10, [305545]
[2025-06-05 20:56:28] 2025-06-05 18:54:57,077 | INFO     | zombie collector waiting for pid 305545
[2025-06-05 20:56:28] 2025-06-05 18:54:57,077 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 20:56:28] 2025-06-05 18:54:57,077 | INFO     | collected zombie processes
[2025-06-05 20:56:28] 2025-06-05 18:54:57,078 | INFO     | will attempt to kill all subprocesses of pid=305545
[2025-06-05 20:56:28] 2025-06-05 18:54:57,726 | INFO     | process IDs to be killed: [305545] (in reverse order)
[2025-06-05 20:56:28] 2025-06-05 18:54:57,977 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 20:56:28] 2025-06-05 18:54:57,977 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 20:56:28] 2025-06-05 18:54:58,005 | INFO     | did not find any defunct processes belonging to 305545
[2025-06-05 20:56:28] 2025-06-05 18:54:58,030 | INFO     | did not find any defunct processes belonging to 305545
[2025-06-05 20:56:28] 2025-06-05 18:54:58,031 | INFO     | ready for new job
[2025-06-05 20:56:28] 2025-06-05 18:54:58,031 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 20:56:28] 2025-06-05 18:54:58,033 | INFO     | **************************************
[2025-06-05 20:56:28] 2025-06-05 18:54:58,033 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 20:56:28] 2025-06-05 18:54:58,033 | INFO     | **************************************
[2025-06-05 20:56:28] 2025-06-05 18:54:58,033 | INFO     | 
[2025-06-05 20:56:28] 2025-06-05 18:54:58,042 | INFO     | architecture information:
[2025-06-05 20:56:28] 2025-06-05 18:54:58,042 | INFO     | executing command: cat /etc/os-release
[2025-06-05 20:56:28] 2025-06-05 18:54:58,060 | INFO     | cat /etc/os-release:
[2025-06-05 20:56:28] NAME="CentOS Linux"
[2025-06-05 20:56:28] VERSION="7 (Core)"
[2025-06-05 20:56:28] ID="centos"
[2025-06-05 20:56:28] ID_LIKE="rhel fedora"
[2025-06-05 20:56:28] VERSION_ID="7"
[2025-06-05 20:56:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 20:56:28] ANSI_COLOR="0;31"
[2025-06-05 20:56:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 20:56:28] HOME_URL="https://www.centos.org/"
[2025-06-05 20:56:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 20:56:28] 
[2025-06-05 20:56:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 20:56:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 20:56:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 20:56:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 20:56:28] 
[2025-06-05 20:56:28] 2025-06-05 18:54:58,060 | INFO     | **************************************
[2025-06-05 20:56:28] 2025-06-05 18:54:58,562 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/0
[2025-06-05 20:56:28] 2025-06-05 18:54:58,584 | INFO     | sufficient remaining disk space (3324382281728 B)
[2025-06-05 20:56:28] 2025-06-05 18:54:58,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 20:56:28] 2025-06-05 18:54:58,584 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 20:56:28] 2025-06-05 18:54:58,584 | INFO     | update_server=False
[2025-06-05 20:56:28] 2025-06-05 18:54:58,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 20:56:28] 2025-06-05 18:54:58,585 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 20:56:28] 2025-06-05 18:54:58,585 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 20:56:28] 2025-06-05 18:54:58,586 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 20:56:28] 2025-06-05 18:54:58,586 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 20:56:28] 2025-06-05 18:54:58,652 | INFO     | all data control threads have been joined
[2025-06-05 20:56:28] 2025-06-05 18:54:58,690 | INFO     | all job control threads have been joined
[2025-06-05 20:56:28] 2025-06-05 18:54:58,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 20:56:28] 2025-06-05 18:54:58,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 20:56:28] 2025-06-05 18:54:58,951 | INFO     | all payload control threads have been joined
[2025-06-05 20:56:28] 2025-06-05 18:54:58,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:56:28] 2025-06-05 18:54:58,996 | INFO     | aborting loop
[2025-06-05 20:56:28] 2025-06-05 18:54:59,590 | INFO     | [job] retrieve thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:54:59,658 | INFO     | [data] control thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:54:59,695 | INFO     | [job] control thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:54:59,778 | INFO     | [payload] failed_post thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:54:59,850 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:54:59,956 | INFO     | [payload] control thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,001 | INFO     | [job] job monitor thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,212 | INFO     | [job] validate thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,252 | INFO     | [payload] validate_post thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,326 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,417 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,428 | INFO     | [data] copytool_in thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,803 | INFO     | [data] copytool_out thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:00,846 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:01,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 20:56:28] 2025-06-05 18:55:02,044 | INFO     | [job] queue monitor thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:02,791 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 20:56:28] 2025-06-05 18:55:04,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23112073803584)>', '<ExcThread(monitor, started 23111839741696)>']
[2025-06-05 20:56:28] 2025-06-05 18:55:04,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 20:56:28] 2025-06-05 18:55:04,601 | INFO     | [monitor] control thread has ended
[2025-06-05 20:56:28] 2025-06-05 18:55:09,584 | INFO     | all workflow threads have been joined
[2025-06-05 20:56:28] 2025-06-05 18:55:09,584 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 20:56:28] 2025-06-05 18:55:09,584 | INFO     | traces error code: 0
[2025-06-05 20:56:28] 2025-06-05 18:55:09,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 20:56:28] 2025-06-05 18:55:09,739 [wrapper] ==== pilot stdout END ====
[2025-06-05 20:56:28] 2025-06-05 18:55:09,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 20:56:28] 2025-06-05 18:55:09,748 [wrapper] pilotpid: 117066
[2025-06-05 20:56:28] 2025-06-05 18:55:09,752 [wrapper] Pilot exit status: 0
[2025-06-05 20:56:28] 2025-06-05 18:55:09,764 [wrapper] pandaids: 6678150226 6678150226
[2025-06-05 20:56:28] 2025-06-05 18:55:09,903 [wrapper] cleanup supervisor_pilot  989522 117075
[2025-06-05 20:56:28] 2025-06-05 18:55:09,907 [wrapper] Test setup, not cleaning
[2025-06-05 20:56:28] 2025-06-05 18:55:09,910 [wrapper] apfmon messages muted
[2025-06-05 20:56:28] 2025-06-05 18:55:09,914 [wrapper] ==== wrapper stdout END ====
[2025-06-05 20:56:28] 2025-06-05 18:55:09,917 [wrapper] ==== wrapper stderr END ====
[2025-06-05 20:56:28]  *** Error codes and diagnostics ***
[2025-06-05 20:56:28]     "exeErrorCode": 0,
[2025-06-05 20:56:28]     "exeErrorDiag": "",
[2025-06-05 20:56:28]     "pilotErrorCode": 0,
[2025-06-05 20:56:28]     "pilotErrorDiag": "",
[2025-06-05 20:56:28]  *** Listing of results directory ***
[2025-06-05 20:56:28] total 602692
[2025-06-05 20:56:28] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:57 pilot3.tar.gz
[2025-06-05 20:56:28] -rwx------ 1 boinc boinc     37140 Jun  3 23:58 runpilot2-wrapper.sh
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:58 queuedata.json
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc       100 Jun  5 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 20:56:28] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 18:01 run_atlas
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc       105 Jun  5 18:01 job.xml
[2025-06-05 20:56:28] -rw-r--r-- 3 boinc boinc 215578707 Jun  5 18:01 EVNT.45006593._001873.pool.root.1
[2025-06-05 20:56:28] -rw-r--r-- 3 boinc boinc 215578707 Jun  5 18:01 ATLAS.root_0
[2025-06-05 20:56:28] -rw-r--r-- 2 boinc boinc     15093 Jun  5 18:01 start_atlas.sh
[2025-06-05 20:56:28] drwxrwx--x 2 boinc boinc      4096 Jun  5 18:01 shared
[2025-06-05 20:56:28] -rw-r--r-- 2 boinc boinc    508874 Jun  5 18:01 input.tar.gz
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc         0 Jun  5 18:01 boinc_lockfile
[2025-06-05 20:56:28] -rw------- 1 boinc boinc   1598969 Jun  5 18:01 agis_ddmendpoints.agis.ALL.json
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc      2524 Jun  5 18:42 pandaJob.out
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc      6688 Jun  5 18:42 init_data.xml
[2025-06-05 20:56:28] -rw------- 1 boinc boinc    983229 Jun  5 18:42 agis_schedconf.cvmfs.json
[2025-06-05 20:56:28] -rw------- 1 boinc boinc 180111380 Jun  5 20:54 HITS.45006595._046725.pool.root.1
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc       529 Jun  5 20:54 boinc_task_state.xml
[2025-06-05 20:56:28] -rw------- 1 boinc boinc      1041 Jun  5 20:54 memory_monitor_summary.json
[2025-06-05 20:56:28] -rw------- 1 boinc boinc    280082 Jun  5 20:54 log.45006595._046725.job.log.tgz.1
[2025-06-05 20:56:28] -rw------- 1 boinc boinc        96 Jun  5 20:54 pilot_heartbeat.json
[2025-06-05 20:56:28] -rw------- 1 boinc boinc      7721 Jun  5 20:54 heartbeat.json
[2025-06-05 20:56:28] -rw------- 1 boinc boinc      4487 Jun  5 20:55 pilotlog.txt
[2025-06-05 20:56:28] -rw------- 1 boinc boinc    745066 Jun  5 20:55 log.45006595._046725.job.log.1
[2025-06-05 20:56:28] -rw------- 1 boinc boinc       357 Jun  5 20:55 output.list
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc       620 Jun  5 20:55 runtime_log
[2025-06-05 20:56:28] -rw------- 1 boinc boinc   1044480 Jun  5 20:55 result.tar.gz
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc      9102 Jun  5 20:55 runtime_log.err
[2025-06-05 20:56:28] -rw------- 1 boinc boinc       792 Jun  5 20:55 iO4MDmDpog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmr5ZKDmmXAk6m.diag
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc        27 Jun  5 20:56 wrapper_checkpoint.txt
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc      8192 Jun  5 20:56 boinc_mmap_file
[2025-06-05 20:56:28] -rw-r--r-- 1 boinc boinc     22525 Jun  5 20:56 stderr.txt
[2025-06-05 20:56:28] HITS file was successfully produced:
[2025-06-05 20:56:28] -rw------- 1 boinc boinc 180111380 Jun  5 20:54 shared/HITS.pool.root.1
[2025-06-05 20:56:28]  *** Contents of shared directory: ***
[2025-06-05 20:56:28] total 387964
[2025-06-05 20:56:28] -rw-r--r-- 3 boinc boinc 215578707 Jun  5 18:01 ATLAS.root_0
[2025-06-05 20:56:28] -rw-r--r-- 2 boinc boinc     15093 Jun  5 18:01 start_atlas.sh
[2025-06-05 20:56:28] -rw-r--r-- 2 boinc boinc    508874 Jun  5 18:01 input.tar.gz
[2025-06-05 20:56:28] -rw------- 1 boinc boinc 180111380 Jun  5 20:54 HITS.pool.root.1
[2025-06-05 20:56:28] -rw------- 1 boinc boinc   1044480 Jun  5 20:55 result.tar.gz
20:56:29 (13528): run_atlas exited; CPU time 30198.525309
20:56:29 (13528): called boinc_finish(0)

</stderr_txt>
]]>

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