Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:59:11 (20437): wrapper (7.7.26015): starting
14:59:11 (20437): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 14:59:11] Arguments: --nthreads 8
[2025-06-04 14:59:11] Threads: 8
[2025-06-04 14:59:11] Checking for CVMFS
[2025-06-04 14:59:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:59:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:59:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:59:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:59:13] 2.11.2.0 9777 33261 90760 146780 1 103 17723910 25165824 3132 130560 0 17937328 99.872 18085251 1961 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 14:59:13] CVMFS is ok
[2025-06-04 14:59:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:59:13] Checking for apptainer binary...
[2025-06-04 14:59:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:59:13] Running /usr/bin/apptainer --version
[2025-06-04 14:59:13] apptainer version 1.3.2-1.el7
[2025-06-04 14:59:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:00:26] cg-vwn477.simple-grid.lan
[2025-06-04 15:00:26] apptainer works
[2025-06-04 15:00:26] Set ATHENA_PROC_NUMBER=8
[2025-06-04 15:00:26] Set ATHENA_CORE_NUMBER=8
[2025-06-04 15:00:27] Starting ATLAS job with PandaID=6678075653
[2025-06-04 15:00:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:59:27]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:59:27] 2025-06-04 16:39:18,482 | INFO     | extracted standard info from prmon json
[2025-06-04 20:59:27] 2025-06-04 16:39:18,482 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:59:27] 2025-06-04 16:39:18,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:59:27] 2025-06-04 16:39:18,483 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:59:27] 2025-06-04 16:39:18,483 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:59:27] 2025-06-04 16:39:18,487 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:59:27] 2025-06-04 16:39:18,488 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,489 | INFO     | sum of deviations: 76477634676.00002
[2025-06-04 20:59:27] 2025-06-04 16:39:18,490 | INFO     | mean x: 1749048869.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,490 | INFO     | mean y: 2410801.0197044336
[2025-06-04 20:59:27] 2025-06-04 16:39:18,490 | INFO     | -- intersect: -51565601611.09783
[2025-06-04 20:59:27] 2025-06-04 16:39:18,490 | INFO     | intersect: -51565601611.09783
[2025-06-04 20:59:27] 2025-06-04 16:39:18,490 | INFO     | chi2: 6.095050783027687
[2025-06-04 20:59:27] 2025-06-04 16:39:18,491 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 20:59:27] 2025-06-04 16:39:18,492 | INFO     | sum of deviations: 87556079465.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,492 | INFO     | mean x: 1749048716.5
[2025-06-04 20:59:27] 2025-06-04 16:39:18,493 | INFO     | mean y: 2419617.3131313133
[2025-06-04 20:59:27] 2025-06-04 16:39:18,493 | INFO     | -- intersect: -63622214232.44172
[2025-06-04 20:59:27] 2025-06-04 16:39:18,493 | INFO     | intersect: -63622214232.44172
[2025-06-04 20:59:27] 2025-06-04 16:39:18,493 | INFO     | chi2: 5.377576116992779
[2025-06-04 20:59:27] 2025-06-04 16:39:18,493 | INFO     | current chi2=5.377576116992779 (change=11.7714304864004 %)
[2025-06-04 20:59:27] 2025-06-04 16:39:18,493 | INFO     | right removable region: 197
[2025-06-04 20:59:27] 2025-06-04 16:39:18,494 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 20:59:27] 2025-06-04 16:39:18,495 | INFO     | sum of deviations: 8737085479.5
[2025-06-04 20:59:27] 2025-06-04 16:39:18,495 | INFO     | mean x: 1749049021.5
[2025-06-04 20:59:27] 2025-06-04 16:39:18,496 | INFO     | mean y: 2465974.388888889
[2025-06-04 20:59:27] 2025-06-04 16:39:18,496 | INFO     | -- intersect: -6346538742.14214
[2025-06-04 20:59:27] 2025-06-04 16:39:18,496 | INFO     | intersect: -6346538742.14214
[2025-06-04 20:59:27] 2025-06-04 16:39:18,496 | INFO     | chi2: 1.5398483203257325
[2025-06-04 20:59:27] 2025-06-04 16:39:18,496 | INFO     | current chi2=1.5398483203257325 (change=74.73608711163486 %)
[2025-06-04 20:59:27] 2025-06-04 16:39:18,497 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,505 | INFO     | sum of deviations: -13081611406.000002
[2025-06-04 20:59:27] 2025-06-04 16:39:18,506 | INFO     | mean x: 1749049174.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,506 | INFO     | mean y: 2484491.284974093
[2025-06-04 20:59:27] 2025-06-04 16:39:18,506 | INFO     | -- intersect: 10266671881.125917
[2025-06-04 20:59:27] 2025-06-04 16:39:18,506 | INFO     | intersect: 10266671881.125917
[2025-06-04 20:59:27] 2025-06-04 16:39:18,506 | INFO     | chi2: 0.8497361157048047
[2025-06-04 20:59:27] 2025-06-04 16:39:18,506 | INFO     | current chi2=0.8497361157048047 (change=44.81689498319839 %)
[2025-06-04 20:59:27] 2025-06-04 16:39:18,507 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,508 | INFO     | sum of deviations: -8212213053.5
[2025-06-04 20:59:27] 2025-06-04 16:39:18,508 | INFO     | mean x: 1749049326.5
[2025-06-04 20:59:27] 2025-06-04 16:39:18,508 | INFO     | mean y: 2480054.3563829786
[2025-06-04 20:59:27] 2025-06-04 16:39:18,509 | INFO     | -- intersect: 6973921461.263851
[2025-06-04 20:59:27] 2025-06-04 16:39:18,509 | INFO     | intersect: 6973921461.263851
[2025-06-04 20:59:27] 2025-06-04 16:39:18,509 | INFO     | chi2: 0.8188940852449552
[2025-06-04 20:59:27] 2025-06-04 16:39:18,509 | INFO     | current chi2=0.8188940852449552 (change=3.62960098903974 %)
[2025-06-04 20:59:27] 2025-06-04 16:39:18,509 | INFO     | left removable region: 30
[2025-06-04 20:59:27] 2025-06-04 16:39:18,510 | INFO     | sum of square deviations: 1444149868.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,511 | INFO     | sum of deviations: 4732962245.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,511 | INFO     | mean x: 1749049601.0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,511 | INFO     | mean y: 2490811.4670658684
[2025-06-04 20:59:27] 2025-06-04 16:39:18,511 | INFO     | -- intersect: -5729729860.082596
[2025-06-04 20:59:27] 2025-06-04 16:39:18,511 | INFO     | intersect: -5729729860.082596
[2025-06-04 20:59:27] 2025-06-04 16:39:18,512 | INFO     | chi2: 0.0003009795038184248
[2025-06-04 20:59:27] 2025-06-04 16:39:18,512 | INFO     | -- intersect: -5729729860.082596
[2025-06-04 20:59:27] 2025-06-04 16:39:18,512 | INFO     | current memory leak: 3.28 B/s (using 167 data points, chi2=0.00)
[2025-06-04 20:59:27] 2025-06-04 16:39:18,513 | INFO     | ..............................
[2025-06-04 20:59:27] 2025-06-04 16:39:18,513 | INFO     | . Timing measurements:
[2025-06-04 20:59:27] 2025-06-04 16:39:18,513 | INFO     | . get job = 0 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,513 | INFO     | . initial setup = 2 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,513 | INFO     | . payload setup = 152 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,513 | INFO     | . stage-in = 0 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,513 | INFO     | . payload execution = 12504 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,514 | INFO     | . stage-out = 3 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,514 | INFO     | . log creation = 1 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,514 | INFO     | ..............................
[2025-06-04 20:59:27] 2025-06-04 16:39:18,930 | INFO     | 
[2025-06-04 20:59:27] 2025-06-04 16:39:18,930 | INFO     | job summary report
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | --------------------------------------------------
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | PanDA job id: 6678075653
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | task id: 45006595
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | errors: (none)
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | pilot state: finished 
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | transexitcode: 0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | exeerrorcode: 0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | exeerrordiag: 
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | exitcode: 0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,931 | INFO     | exitmsg: OK
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | cpuconsumptiontime: 44001 s
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | nevents: 400
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | neventsw: 0
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | pid: 2382
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | pgrp: 2382
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | corecount: 8
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | event service: False
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | sizes: {0: 2397171, 1: 2397370, 12: 2397370, 23: 2397398, 34: 2397426, 44: 2397454, 55: 2397610, 66: 2397638, 77: 2397666, 78: 2397928, 87: 2397984, 12660: 2427434
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | --------------------------------------------------
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | 
[2025-06-04 20:59:27] 2025-06-04 16:39:18,932 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 20:59:27] 2025-06-04 16:39:19,167 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,167 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,167 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,167 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:59:27] 2025-06-04 16:39:19,169 | INFO     | job 6678075653 has completed (purged errors)
[2025-06-04 20:59:27] 2025-06-04 16:39:19,170 | INFO     | overall cleanup function is called
[2025-06-04 20:59:27] 2025-06-04 16:39:20,178 | INFO     | --- collectZombieJob: --- 10, [2382]
[2025-06-04 20:59:27] 2025-06-04 16:39:20,178 | INFO     | zombie collector waiting for pid 2382
[2025-06-04 20:59:27] 2025-06-04 16:39:20,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:59:27] 2025-06-04 16:39:20,179 | INFO     | collected zombie processes
[2025-06-04 20:59:27] 2025-06-04 16:39:20,179 | INFO     | will attempt to kill all subprocesses of pid=2382
[2025-06-04 20:59:27] 2025-06-04 16:39:20,285 | INFO     | process IDs to be killed: [2382] (in reverse order)
[2025-06-04 20:59:27] 2025-06-04 16:39:20,527 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:59:27] 2025-06-04 16:39:20,527 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:59:27] 2025-06-04 16:39:20,530 | INFO     | did not find any defunct processes belonging to 2382
[2025-06-04 20:59:27] 2025-06-04 16:39:20,534 | INFO     | did not find any defunct processes belonging to 2382
[2025-06-04 20:59:27] 2025-06-04 16:39:20,534 | INFO     | ready for new job
[2025-06-04 20:59:27] 2025-06-04 16:39:20,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:59:27] 2025-06-04 16:39:20,536 | INFO     | **************************************
[2025-06-04 20:59:27] 2025-06-04 16:39:20,536 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:59:27] 2025-06-04 16:39:20,536 | INFO     | **************************************
[2025-06-04 20:59:27] 2025-06-04 16:39:20,537 | INFO     | 
[2025-06-04 20:59:27] 2025-06-04 16:39:20,537 | INFO     | pilot is running in a VM
[2025-06-04 20:59:27] 2025-06-04 16:39:20,537 | INFO     | architecture information:
[2025-06-04 20:59:27] 2025-06-04 16:39:20,540 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:59:27] 2025-06-04 16:39:20,646 | INFO     | cat /etc/os-release:
[2025-06-04 20:59:27] NAME="CentOS Linux"
[2025-06-04 20:59:27] VERSION="7 (Core)"
[2025-06-04 20:59:27] ID="centos"
[2025-06-04 20:59:27] ID_LIKE="rhel fedora"
[2025-06-04 20:59:27] VERSION_ID="7"
[2025-06-04 20:59:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:59:27] ANSI_COLOR="0;31"
[2025-06-04 20:59:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:59:27] HOME_URL="https://www.centos.org/"
[2025-06-04 20:59:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:59:27] 
[2025-06-04 20:59:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:59:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:59:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:59:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:59:27] 
[2025-06-04 20:59:27] 2025-06-04 16:39:20,646 | INFO     | **************************************
[2025-06-04 20:59:27] 2025-06-04 16:39:21,149 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 20:59:27] 2025-06-04 16:39:21,333 | INFO     | sufficient remaining disk space (496940089344 B)
[2025-06-04 20:59:27] 2025-06-04 16:39:21,341 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:59:27] 2025-06-04 16:39:21,342 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:59:27] 2025-06-04 16:39:21,342 | INFO     | update_server=False
[2025-06-04 20:59:27] 2025-06-04 16:39:21,342 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:59:27] 2025-06-04 16:39:21,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:59:27] 2025-06-04 16:39:21,345 | INFO     | aborting loop
[2025-06-04 20:59:27] 2025-06-04 16:39:21,349 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:59:27] 2025-06-04 16:39:21,350 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:59:27] 2025-06-04 16:39:21,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:59:27] 2025-06-04 16:39:21,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:59:27] 2025-06-04 16:39:21,356 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:59:27] 2025-06-04 16:39:21,621 | INFO     | all payload control threads have been joined
[2025-06-04 20:59:27] 2025-06-04 16:39:21,835 | INFO     | all data control threads have been joined
[2025-06-04 20:59:27] 2025-06-04 16:39:22,348 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:22,350 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:22,373 | INFO     | [job] validate thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:22,460 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:59:27] 2025-06-04 16:39:22,627 | INFO     | [payload] control thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:22,789 | INFO     | all job control threads have been joined
[2025-06-04 20:59:27] 2025-06-04 16:39:22,841 | INFO     | [data] control thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:22,919 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:23,005 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:23,555 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:23,597 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:23,639 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:23,677 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:23,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:59:27] 2025-06-04 16:39:23,795 | INFO     | [job] control thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:23,827 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:24,467 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:24,728 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:25,365 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:59:27] 2025-06-04 16:39:25,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139805327714112)>', '<ExcThread(monitor, started 139805027440384)>']
[2025-06-04 20:59:27] 2025-06-04 16:39:26,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:59:27] 2025-06-04 16:39:26,380 | INFO     | [monitor] control thread has ended
[2025-06-04 20:59:27] 2025-06-04 16:39:30,412 | INFO     | all workflow threads have been joined
[2025-06-04 20:59:27] 2025-06-04 16:39:30,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:59:27] 2025-06-04 16:39:30,413 | INFO     | traces error code: 0
[2025-06-04 20:59:27] 2025-06-04 16:39:30,413 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:59:27] 2025-06-04 16:39:30,754 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:59:27] 2025-06-04 16:39:30,859 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:59:27] 2025-06-04 16:39:30,949 [wrapper] pilotpid: 24175
[2025-06-04 20:59:27] 2025-06-04 16:39:31,085 [wrapper] Pilot exit status: 0
[2025-06-04 20:59:27] 2025-06-04 16:39:31,349 [wrapper] pandaids: 6678075653
[2025-06-04 20:59:27] 2025-06-04 16:39:31,473 [wrapper] cleanup supervisor_pilot 25670 24176
[2025-06-04 20:59:27] 2025-06-04 16:39:31,492 [wrapper] Test setup, not cleaning
[2025-06-04 20:59:27] 2025-06-04 16:39:31,501 [wrapper] apfmon messages muted
[2025-06-04 20:59:27] 2025-06-04 16:39:31,512 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:59:27] 2025-06-04 16:39:31,524 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:59:27]  *** Error codes and diagnostics ***
[2025-06-04 20:59:27]     "exeErrorCode": 0,
[2025-06-04 20:59:27]     "exeErrorDiag": "",
[2025-06-04 20:59:27]     "pilotErrorCode": 0,
[2025-06-04 20:59:27]     "pilotErrorDiag": "",
[2025-06-04 20:59:27]  *** Listing of results directory ***
[2025-06-04 20:59:27] total 383984
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:41 pilot3.tar.gz
[2025-06-04 20:59:27] -rwx------. 1 boinc boinc     37140 Jun  3 23:47 runpilot2-wrapper.sh
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc      5111 Jun  3 23:47 queuedata.json
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc       100 Jun  4 14:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:59:27] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 14:59 run_atlas
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc       105 Jun  4 14:59 job.xml
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc      6392 Jun  4 14:59 init_data.xml
[2025-06-04 20:59:27] -rw-r--r--. 2 boinc boinc 214182430 Jun  4 14:59 EVNT.45006593._001855.pool.root.1
[2025-06-04 20:59:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:59 start_atlas.sh
[2025-06-04 20:59:27] drwxrwx--x. 2 boinc boinc        68 Jun  4 14:59 shared
[2025-06-04 20:59:27] -rw-r--r--. 2 boinc boinc    508882 Jun  4 14:59 input.tar.gz
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc         0 Jun  4 14:59 boinc_lockfile
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc      2525 Jun  4 15:00 pandaJob.out
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc    986811 Jun  4 15:03 agis_schedconf.cvmfs.json
[2025-06-04 20:59:27] drwx------. 4 boinc boinc      4096 Jun  4 15:03 pilot3
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc 172187265 Jun  4 18:36 HITS.45006595._046260.pool.root.1
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc       531 Jun  4 18:36 boinc_task_state.xml
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc      1019 Jun  4 18:37 memory_monitor_summary.json
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc   1598969 Jun  4 18:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc    392537 Jun  4 18:37 log.45006595._046260.job.log.tgz.1
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc        95 Jun  4 18:38 pilot_heartbeat.json
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc      7691 Jun  4 18:39 heartbeat.json
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc      4539 Jun  4 18:39 pilotlog.txt
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc   1117216 Jun  4 18:39 log.45006595._046260.job.log.1
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc       357 Jun  4 18:39 output.list
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc       620 Jun  4 18:39 runtime_log
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc   1525760 Jun  4 18:39 result.tar.gz
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc       656 Jun  4 18:39 YL8MDm7eog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmO2ZKDm9Fc5Ho.diag
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc      8659 Jun  4 18:39 runtime_log.err
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc        28 Jun  4 20:59 wrapper_checkpoint.txt
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc      8192 Jun  4 20:59 boinc_mmap_file
[2025-06-04 20:59:27] -rw-r--r--. 1 boinc boinc     20489 Jun  4 20:59 stderr.txt
[2025-06-04 20:59:27] HITS file was successfully produced:
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc 172187265 Jun  4 18:36 shared/HITS.pool.root.1
[2025-06-04 20:59:27]  *** Contents of shared directory: ***
[2025-06-04 20:59:27] total 379324
[2025-06-04 20:59:27] -rw-r--r--. 2 boinc boinc 214182430 Jun  4 14:59 ATLAS.root_0
[2025-06-04 20:59:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:59 start_atlas.sh
[2025-06-04 20:59:27] -rw-r--r--. 2 boinc boinc    508882 Jun  4 14:59 input.tar.gz
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc 172187265 Jun  4 18:36 HITS.pool.root.1
[2025-06-04 20:59:27] -rw-------. 1 boinc boinc   1525760 Jun  4 18:39 result.tar.gz
20:59:29 (20437): run_atlas exited; CPU time 44163.328587
20:59:29 (20437): called boinc_finish(0)

</stderr_txt>
]]>

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