Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:46:53 (659590): wrapper (7.7.26015): starting
23:46:53 (659590): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 23:46:54] Arguments: --nthreads 12
[2025-06-05 23:46:54] Threads: 12
[2025-06-05 23:46:54] Checking for CVMFS
[2025-06-05 23:46:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 23:46:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 23:46:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 23:46:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 23:46:54] 2.12.7.0 4529 1587 43652 146836 0 56 2384916 4096000 0 130560 0 1836103 99.993 396439 145 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 23:46:54] CVMFS is ok
[2025-06-05 23:46:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 23:46:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 23:46:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 23:46:54] Further information can be found at the LHC@home message board.
[2025-06-05 23:46:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 23:46:54] Checking for apptainer binary...
[2025-06-05 23:46:54] apptainer is not installed, using version from CVMFS
[2025-06-05 23:46:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 23:46:59] martinpcalt
[2025-06-05 23:46:59] apptainer works
[2025-06-05 23:46:59] Set ATHENA_PROC_NUMBER=12
[2025-06-05 23:46:59] Set ATHENA_CORE_NUMBER=12
[2025-06-05 23:46:59] Starting ATLAS job with PandaID=6678213740
[2025-06-05 23:46:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 02:04:34]  *** The last 200 lines of the pilot log: ***
[2025-06-06 02:04:34] 2025-06-06 02:04:13,384 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 02:04:34] 2025-06-06 02:04:13,384 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 02:04:34] 2025-06-06 02:04:13,384 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 02:04:34] 2025-06-06 02:04:13,384 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 02:04:34] 2025-06-06 02:04:13,386 | INFO     | fitting pss+swap vs Time
[2025-06-06 02:04:34] 2025-06-06 02:04:13,386 | INFO     | sum of square deviations: 746051197.5
[2025-06-06 02:04:34] 2025-06-06 02:04:13,387 | INFO     | sum of deviations: -3940035048.499995
[2025-06-06 02:04:34] 2025-06-06 02:04:13,387 | INFO     | mean x: 1749171310.5
[2025-06-06 02:04:34] 2025-06-06 02:04:13,387 | INFO     | mean y: 2657806.052238806
[2025-06-06 02:04:34] 2025-06-06 02:04:13,387 | INFO     | -- intersect: 9240356629.262918
[2025-06-06 02:04:34] 2025-06-06 02:04:13,387 | INFO     | intersect: 9240356629.262918
[2025-06-06 02:04:34] 2025-06-06 02:04:13,387 | INFO     | chi2: 2.2776913795645606
[2025-06-06 02:04:34] 2025-06-06 02:04:13,387 | INFO     | sum of square deviations: 665612480.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | sum of deviations: 5762635596.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | mean x: 1749171158.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | mean y: 2675652.7751937984
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | -- intersect: -15141024745.671873
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | intersect: -15141024745.671873
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | chi2: 1.4888189709289585
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | current chi2=1.4888189709289585 (change=34.63473654566912 %)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,388 | INFO     | sum of square deviations: 591173875.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | sum of deviations: 5707548173.500002
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | mean x: 1749171005.5
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | mean y: 2675539.8629032257
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | -- intersect: -16884873453.368042
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | intersect: -16884873453.368042
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | chi2: 1.4907319745762708
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | current chi2=1.4907319745762708 (change=-0.12849135352692692 %)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,389 | INFO     | right removable region: 123
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | sum of square deviations: 665612480.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | sum of deviations: -23717043207.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | mean x: 1749171463.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | mean y: 2694547.7906976743
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | -- intersect: 62329012654.72042
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | intersect: 62329012654.72042
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | chi2: 0.8776369112453949
[2025-06-06 02:04:34] 2025-06-06 02:04:13,390 | INFO     | current chi2=0.8776369112453949 (change=61.46813746938894 %)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | sum of square deviations: 591173875.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | sum of deviations: -21158830209.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | mean x: 1749171615.5
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | mean y: 2689287.2258064514
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | -- intersect: 62607663532.35248
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | intersect: 62607663532.35248
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | chi2: 0.8775613723053882
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | current chi2=0.8775613723053882 (change=0.008607083298203302 %)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,391 | INFO     | left removable region: 20
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | sum of square deviations: 338804492.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | sum of deviations: -5251705878.999998
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | mean x: 1749171585.0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | mean y: 2695734.155339806
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | -- intersect: 27116075022.89347
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | intersect: 27116075022.89347
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | chi2: 0.03553035793930359
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | -- intersect: 27116075022.89347
[2025-06-06 02:04:34] 2025-06-06 02:04:13,392 | INFO     | current memory leak: -15.50 B/s (using 103 data points, chi2=0.04)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | ..............................
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . Timing measurements:
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . get job = 0 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . initial setup = 1 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . payload setup = 12 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . stage-in = 0 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . payload execution = 8154 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . stage-out = 1 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | . log creation = 0 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,393 | INFO     | ..............................
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | 
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | job summary report
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | --------------------------------------------------
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | PanDA job id: 6678213740
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | task id: 45006595
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | errors: (none)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | pilot state: finished 
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | transexitcode: 0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | exeerrorcode: 0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | exeerrordiag: 
[2025-06-06 02:04:34] 2025-06-06 02:04:13,455 | INFO     | exitcode: 0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | exitmsg: OK
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | cpuconsumptiontime: 27428 s
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | nevents: 400
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | neventsw: 0
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | pid: 679887
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | pgrp: 679887
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | corecount: 12
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | event service: False
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | sizes: {0: 2396512, 1: 2397391, 2: 2397597, 11: 2397625, 8167: 2425177, 8168: 2425176, 8170: 2434347, 8173: 2434403, 8214: 2434573}
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | --------------------------------------------------
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | 
[2025-06-06 02:04:34] 2025-06-06 02:04:13,456 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-06-06 02:04:34] 2025-06-06 02:04:13,466 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,467 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | job 6678213740 has completed (purged errors)
[2025-06-06 02:04:34] 2025-06-06 02:04:13,468 | INFO     | overall cleanup function is called
[2025-06-06 02:04:34] 2025-06-06 02:04:13,595 | INFO     | PID=665951 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-06 02:04:34] 2025-06-06 02:04:13,595 | INFO     | .. there are 2 such processes running
[2025-06-06 02:04:34] 2025-06-06 02:04:14,474 | INFO     | --- collectZombieJob: --- 10, [679887]
[2025-06-06 02:04:34] 2025-06-06 02:04:14,475 | INFO     | zombie collector waiting for pid 679887
[2025-06-06 02:04:34] 2025-06-06 02:04:14,475 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 02:04:34] 2025-06-06 02:04:14,475 | INFO     | collected zombie processes
[2025-06-06 02:04:34] 2025-06-06 02:04:14,475 | INFO     | will attempt to kill all subprocesses of pid=679887
[2025-06-06 02:04:34] 2025-06-06 02:04:14,523 | INFO     | process IDs to be killed: [679887] (in reverse order)
[2025-06-06 02:04:34] 2025-06-06 02:04:14,544 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 02:04:34] 2025-06-06 02:04:14,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 02:04:34] 2025-06-06 02:04:14,545 | INFO     | did not find any defunct processes belonging to 679887
[2025-06-06 02:04:34] 2025-06-06 02:04:14,546 | INFO     | did not find any defunct processes belonging to 679887
[2025-06-06 02:04:34] 2025-06-06 02:04:14,546 | INFO     | ready for new job
[2025-06-06 02:04:34] 2025-06-06 02:04:14,547 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 02:04:34] 2025-06-06 02:04:14,547 | INFO     | **************************************
[2025-06-06 02:04:34] 2025-06-06 02:04:14,547 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 02:04:34] 2025-06-06 02:04:14,548 | INFO     | **************************************
[2025-06-06 02:04:34] 2025-06-06 02:04:14,548 | INFO     | 
[2025-06-06 02:04:34] 2025-06-06 02:04:14,564 | INFO     | architecture information:
[2025-06-06 02:04:34] 2025-06-06 02:04:14,564 | INFO     | executing command: cat /etc/os-release
[2025-06-06 02:04:34] 2025-06-06 02:04:14,571 | INFO     | cat /etc/os-release:
[2025-06-06 02:04:34] NAME="CentOS Linux"
[2025-06-06 02:04:34] VERSION="7 (Core)"
[2025-06-06 02:04:34] ID="centos"
[2025-06-06 02:04:34] ID_LIKE="rhel fedora"
[2025-06-06 02:04:34] VERSION_ID="7"
[2025-06-06 02:04:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 02:04:34] ANSI_COLOR="0;31"
[2025-06-06 02:04:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 02:04:34] HOME_URL="https://www.centos.org/"
[2025-06-06 02:04:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 02:04:34] 
[2025-06-06 02:04:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 02:04:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 02:04:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 02:04:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 02:04:34] 
[2025-06-06 02:04:34] 2025-06-06 02:04:14,571 | INFO     | **************************************
[2025-06-06 02:04:34] 2025-06-06 02:04:15,072 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-06-06 02:04:34] 2025-06-06 02:04:15,080 | INFO     | sufficient remaining disk space (276658388992 B)
[2025-06-06 02:04:34] 2025-06-06 02:04:15,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 02:04:34] 2025-06-06 02:04:15,080 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 02:04:34] 2025-06-06 02:04:15,080 | INFO     | update_server=False
[2025-06-06 02:04:34] 2025-06-06 02:04:15,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 02:04:34] 2025-06-06 02:04:15,080 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 02:04:34] 2025-06-06 02:04:15,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:04:34] 2025-06-06 02:04:15,190 | INFO     | all job control threads have been joined
[2025-06-06 02:04:34] 2025-06-06 02:04:15,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 02:04:34] 2025-06-06 02:04:15,576 | INFO     | aborting loop
[2025-06-06 02:04:34] 2025-06-06 02:04:15,600 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 02:04:34] 2025-06-06 02:04:15,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 02:04:34] 2025-06-06 02:04:15,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 02:04:34] 2025-06-06 02:04:15,867 | INFO     | all payload control threads have been joined
[2025-06-06 02:04:34] 2025-06-06 02:04:15,942 | INFO     | all data control threads have been joined
[2025-06-06 02:04:34] 2025-06-06 02:04:16,084 | INFO     | [job] retrieve thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:16,086 | INFO     | [job] queue monitor thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:16,192 | INFO     | [job] control thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:16,581 | INFO     | [job] job monitor thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:16,873 | INFO     | [payload] control thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:16,948 | INFO     | [data] control thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:16,977 | INFO     | [payload] failed_post thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:16,981 | INFO     | [data] copytool_in thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:17,084 | INFO     | [data] copytool_out thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:17,149 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:17,248 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:17,359 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:17,364 | INFO     | [job] validate thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:17,436 | INFO     | [payload] validate_post thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:18,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 02:04:34] 2025-06-06 02:04:22,336 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:25,568 | INFO     | job.realtimelogging is not enabled
[2025-06-06 02:04:34] 2025-06-06 02:04:26,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 02:04:34] 2025-06-06 02:04:28,596 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660654135104)>', '<ExcThread(monitor, started 140660212479744)>']
[2025-06-06 02:04:34] 2025-06-06 02:04:28,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 02:04:34] 2025-06-06 02:04:28,652 | INFO     | [monitor] control thread has ended
[2025-06-06 02:04:34] 2025-06-06 02:04:33,616 | INFO     | all workflow threads have been joined
[2025-06-06 02:04:34] 2025-06-06 02:04:33,616 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 02:04:34] 2025-06-06 02:04:33,632 | INFO     | traces error code: 0
[2025-06-06 02:04:34] 2025-06-06 02:04:33,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 02:04:34] 2025-06-06 02:04:33,924 [wrapper] ==== pilot stdout END ====
[2025-06-06 02:04:34] 2025-06-06 02:04:33,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 02:04:34] 2025-06-06 02:04:33,925 [wrapper] pilotpid: 665951
[2025-06-06 02:04:34] 2025-06-06 02:04:33,926 [wrapper] Pilot exit status: 0
[2025-06-06 02:04:34] 2025-06-06 02:04:33,945 [wrapper] pandaids: 6678213740
[2025-06-06 02:04:34] 2025-06-06 02:04:33,953 [wrapper] cleanup supervisor_pilot  710819 665952
[2025-06-06 02:04:34] 2025-06-06 02:04:33,954 [wrapper] Test setup, not cleaning
[2025-06-06 02:04:34] 2025-06-06 02:04:33,955 [wrapper] apfmon messages muted
[2025-06-06 02:04:34] 2025-06-06 02:04:33,955 [wrapper] ==== wrapper stdout END ====
[2025-06-06 02:04:34] 2025-06-06 02:04:33,956 [wrapper] ==== wrapper stderr END ====
[2025-06-06 02:04:34]  *** Error codes and diagnostics ***
[2025-06-06 02:04:34]     "exeErrorCode": 0,
[2025-06-06 02:04:34]     "exeErrorDiag": "",
[2025-06-06 02:04:34]     "pilotErrorCode": 0,
[2025-06-06 02:04:34]     "pilotErrorDiag": "",
[2025-06-06 02:04:34]  *** Listing of results directory ***
[2025-06-06 02:04:34] total 388580
[2025-06-06 02:04:34] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:52 queuedata.json
[2025-06-06 02:04:34] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:53 pilot3.tar.gz
[2025-06-06 02:04:34] -rwx------ 1 boinc boinc     37140 Jun  3 23:53 runpilot2-wrapper.sh
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc       100 Jun  5 23:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 02:04:34] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 23:46 run_atlas
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc       105 Jun  5 23:46 job.xml
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc      9334 Jun  5 23:46 init_data.xml
[2025-06-06 02:04:34] -rw-r--r-- 2 boinc boinc 215525378 Jun  5 23:46 EVNT.45006593._001949.pool.root.1
[2025-06-06 02:04:34] drwxrwx--x 2 boinc boinc      4096 Jun  5 23:46 shared
[2025-06-06 02:04:34] -rw-r--r-- 2 boinc boinc    508877 Jun  5 23:46 input.tar.gz
[2025-06-06 02:04:34] -rw-r--r-- 2 boinc boinc     15093 Jun  5 23:46 start_atlas.sh
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc         0 Jun  5 23:46 boinc_lockfile
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc      2524 Jun  5 23:46 pandaJob.out
[2025-06-06 02:04:34] -rw------- 1 boinc boinc    987721 Jun  5 23:47 agis_schedconf.cvmfs.json
[2025-06-06 02:04:34] -rw------- 1 boinc boinc   1598969 Jun  5 23:47 agis_ddmendpoints.agis.ALL.json
[2025-06-06 02:04:34] drwx------ 4 boinc boinc      4096 Jun  5 23:47 pilot3
[2025-06-06 02:04:34] -rw------- 1 boinc boinc 176176101 Jun  6 02:02 HITS.45006595._048580.pool.root.1
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc       529 Jun  6 02:02 boinc_task_state.xml
[2025-06-06 02:04:34] -rw------- 1 boinc boinc      1030 Jun  6 02:03 memory_monitor_summary.json
[2025-06-06 02:04:34] -rw------- 1 boinc boinc    381496 Jun  6 02:03 log.45006595._048580.job.log.tgz.1
[2025-06-06 02:04:34] -rw------- 1 boinc boinc        95 Jun  6 02:03 pilot_heartbeat.json
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 02:04 boinc_mmap_file
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc        27 Jun  6 02:04 wrapper_checkpoint.txt
[2025-06-06 02:04:34] -rw------- 1 boinc boinc      7695 Jun  6 02:04 heartbeat.json
[2025-06-06 02:04:34] -rw------- 1 boinc boinc      4449 Jun  6 02:04 pilotlog.txt
[2025-06-06 02:04:34] -rw------- 1 boinc boinc    799651 Jun  6 02:04 log.45006595._048580.job.log.1
[2025-06-06 02:04:34] -rw------- 1 boinc boinc       357 Jun  6 02:04 output.list
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc       620 Jun  6 02:04 runtime_log
[2025-06-06 02:04:34] -rw------- 1 boinc boinc   1198080 Jun  6 02:04 result.tar.gz
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc      8978 Jun  6 02:04 runtime_log.err
[2025-06-06 02:04:34] -rw------- 1 boinc boinc       658 Jun  6 02:04 oPxLDmrcqg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3ZmKDmyai8Dn.diag
[2025-06-06 02:04:34] -rw-rw-r-- 1 boinc boinc     21012 Jun  6 02:04 stderr.txt
[2025-06-06 02:04:34] HITS file was successfully produced:
[2025-06-06 02:04:34] -rw------- 1 boinc boinc 176176101 Jun  6 02:02 shared/HITS.pool.root.1
[2025-06-06 02:04:34]  *** Contents of shared directory: ***
[2025-06-06 02:04:34] total 384220
[2025-06-06 02:04:34] -rw-r--r-- 2 boinc boinc 215525378 Jun  5 23:46 ATLAS.root_0
[2025-06-06 02:04:34] -rw-r--r-- 2 boinc boinc    508877 Jun  5 23:46 input.tar.gz
[2025-06-06 02:04:34] -rw-r--r-- 2 boinc boinc     15093 Jun  5 23:46 start_atlas.sh
[2025-06-06 02:04:34] -rw------- 1 boinc boinc 176176101 Jun  6 02:02 HITS.pool.root.1
[2025-06-06 02:04:34] -rw------- 1 boinc boinc   1198080 Jun  6 02:04 result.tar.gz
02:04:36 (659590): run_atlas exited; CPU time 27460.387417
02:04:36 (659590): called boinc_finish(0)

</stderr_txt>
]]>

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