Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:41:40 (29079): wrapper (7.7.26015): starting
14:41:40 (29079): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 14:41:40] Arguments: --nthreads 8
[2025-06-04 14:41:40] Threads: 8
[2025-06-04 14:41:40] Checking for CVMFS
[2025-06-04 14:41:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:41:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:41:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:41:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:41:42] 2.11.2.0 1205 33209 90320 146780 3 111 20806281 25165825 2748 130560 0 17059253 99.792 19378461 2232 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 14:41:42] CVMFS is ok
[2025-06-04 14:41:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:41:42] Checking for apptainer binary...
[2025-06-04 14:41:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:41:42] Running /usr/bin/apptainer --version
[2025-06-04 14:41:42] apptainer version 1.3.2-1.el7
[2025-06-04 14:41:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:42:06] cg-vwn325.simple-grid.lan
[2025-06-04 14:42:06] apptainer works
[2025-06-04 14:42:06] Set ATHENA_PROC_NUMBER=8
[2025-06-04 14:42:06] Set ATHENA_CORE_NUMBER=8
[2025-06-04 14:42:06] Starting ATLAS job with PandaID=6678212661
[2025-06-04 14:42:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:46:53]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:46:53] 2025-06-04 16:39:48,819 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6678212661/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:46:53] 2025-06-04 16:39:48,820 | INFO     | extracted standard info from prmon json
[2025-06-04 18:46:53] 2025-06-04 16:39:48,820 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:46:53] 2025-06-04 16:39:48,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:46:53] 2025-06-04 16:39:48,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:46:53] 2025-06-04 16:39:48,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:46:53] 2025-06-04 16:39:48,826 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:46:53] 2025-06-04 16:39:48,826 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 18:46:53] 2025-06-04 16:39:48,828 | INFO     | sum of deviations: 66197532022.999985
[2025-06-04 18:46:53] 2025-06-04 16:39:48,828 | INFO     | mean x: 1749048318.5
[2025-06-04 18:46:53] 2025-06-04 16:39:48,828 | INFO     | mean y: 2433826.5495495494
[2025-06-04 18:46:53] 2025-06-04 16:39:48,828 | INFO     | -- intersect: -34125898767.792564
[2025-06-04 18:46:53] 2025-06-04 16:39:48,829 | INFO     | intersect: -34125898767.792564
[2025-06-04 18:46:53] 2025-06-04 16:39:48,829 | INFO     | chi2: 6.561138603767406
[2025-06-04 18:46:53] 2025-06-04 16:39:48,829 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,831 | INFO     | sum of deviations: 79196181843.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,831 | INFO     | mean x: 1749048166.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,831 | INFO     | mean y: 2442489.9216589862
[2025-06-04 18:46:53] 2025-06-04 16:39:48,832 | INFO     | -- intersect: -43715288260.22796
[2025-06-04 18:46:53] 2025-06-04 16:39:48,832 | INFO     | intersect: -43715288260.22796
[2025-06-04 18:46:53] 2025-06-04 16:39:48,832 | INFO     | chi2: 5.85128755055147
[2025-06-04 18:46:53] 2025-06-04 16:39:48,832 | INFO     | current chi2=5.85128755055147 (change=10.819022369201887 %)
[2025-06-04 18:46:53] 2025-06-04 16:39:48,832 | INFO     | right removable region: 216
[2025-06-04 18:46:53] 2025-06-04 16:39:48,833 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,834 | INFO     | sum of deviations: -8009168605.999996
[2025-06-04 18:46:53] 2025-06-04 16:39:48,835 | INFO     | mean x: 1749048471.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,835 | INFO     | mean y: 2484270.8433179725
[2025-06-04 18:46:53] 2025-06-04 16:39:48,835 | INFO     | -- intersect: 4423691576.037208
[2025-06-04 18:46:53] 2025-06-04 16:39:48,835 | INFO     | intersect: 4423691576.037208
[2025-06-04 18:46:53] 2025-06-04 16:39:48,835 | INFO     | chi2: 2.0262542527290766
[2025-06-04 18:46:53] 2025-06-04 16:39:48,835 | INFO     | current chi2=2.0262542527290766 (change=69.11733808571577 %)
[2025-06-04 18:46:53] 2025-06-04 16:39:48,836 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,838 | INFO     | sum of deviations: -39599422033.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,838 | INFO     | mean x: 1749048623.5
[2025-06-04 18:46:53] 2025-06-04 16:39:48,838 | INFO     | mean y: 2506608.8584905663
[2025-06-04 18:46:53] 2025-06-04 16:39:48,838 | INFO     | -- intersect: 23445571337.037243
[2025-06-04 18:46:53] 2025-06-04 16:39:48,838 | INFO     | intersect: 23445571337.037243
[2025-06-04 18:46:53] 2025-06-04 16:39:48,839 | INFO     | chi2: 0.9559149770600344
[2025-06-04 18:46:53] 2025-06-04 16:39:48,839 | INFO     | current chi2=0.9559149770600344 (change=52.823542466472176 %)
[2025-06-04 18:46:53] 2025-06-04 16:39:48,839 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,841 | INFO     | sum of deviations: -39274405310.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,841 | INFO     | mean x: 1749048776.0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,841 | INFO     | mean y: 2506331.637681159
[2025-06-04 18:46:53] 2025-06-04 16:39:48,841 | INFO     | -- intersect: 24979042791.30506
[2025-06-04 18:46:53] 2025-06-04 16:39:48,841 | INFO     | intersect: 24979042791.30506
[2025-06-04 18:46:53] 2025-06-04 16:39:48,842 | INFO     | chi2: 0.9427489672763107
[2025-06-04 18:46:53] 2025-06-04 16:39:48,842 | INFO     | current chi2=0.9427489672763107 (change=1.377320169646924 %)
[2025-06-04 18:46:53] 2025-06-04 16:39:48,842 | INFO     | left removable region: 30
[2025-06-04 18:46:53] 2025-06-04 16:39:48,842 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 18:46:53] 2025-06-04 16:39:48,844 | INFO     | sum of deviations: -4387660490.499999
[2025-06-04 18:46:53] 2025-06-04 16:39:48,844 | INFO     | mean x: 1749049050.5
[2025-06-04 18:46:53] 2025-06-04 16:39:48,844 | INFO     | mean y: 2499618.85483871
[2025-06-04 18:46:53] 2025-06-04 16:39:48,844 | INFO     | -- intersect: 3848685782.2806044
[2025-06-04 18:46:53] 2025-06-04 16:39:48,844 | INFO     | intersect: 3848685782.2806044
[2025-06-04 18:46:53] 2025-06-04 16:39:48,844 | INFO     | chi2: 0.06793294944573372
[2025-06-04 18:46:53] 2025-06-04 16:39:48,845 | INFO     | -- intersect: 3848685782.2806044
[2025-06-04 18:46:53] 2025-06-04 16:39:48,845 | INFO     | current memory leak: -2.20 B/s (using 186 data points, chi2=0.07)
[2025-06-04 18:46:53] 2025-06-04 16:39:48,845 | INFO     | ..............................
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . Timing measurements:
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . get job = 0 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . initial setup = 6 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . payload setup = 121 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . stage-in = 0 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . payload execution = 13657 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . stage-out = 4 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | . log creation = 1 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,846 | INFO     | ..............................
[2025-06-04 18:46:53] 2025-06-04 16:39:48,984 | INFO     | 
[2025-06-04 18:46:53] 2025-06-04 16:39:48,984 | INFO     | job summary report
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | --------------------------------------------------
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | PanDA job id: 6678212661
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | task id: 45006595
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | errors: (none)
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | pilot state: finished 
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | transexitcode: 0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,985 | INFO     | exeerrorcode: 0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | exeerrordiag: 
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | exitcode: 0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | exitmsg: OK
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | cpuconsumptiontime: 49640 s
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | nevents: 400
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | neventsw: 0
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | pid: 11814
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | pgrp: 11814
[2025-06-04 18:46:53] 2025-06-04 16:39:48,986 | INFO     | corecount: 8
[2025-06-04 18:46:53] 2025-06-04 16:39:48,987 | INFO     | event service: False
[2025-06-04 18:46:53] 2025-06-04 16:39:48,987 | INFO     | sizes: {0: 2397121, 1: 2397320, 12: 2397320, 23: 2397348, 33: 2397376, 44: 2397432, 55: 2397588, 66: 2397616, 76: 2397644, 87: 2397700, 93: 2397934, 98: 2398242, 1
[2025-06-04 18:46:53] 2025-06-04 16:39:48,987 | INFO     | --------------------------------------------------
[2025-06-04 18:46:53] 2025-06-04 16:39:48,987 | INFO     | 
[2025-06-04 18:46:53] 2025-06-04 16:39:48,987 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-04 18:46:53] 2025-06-04 16:39:49,555 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,555 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,555 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,555 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,557 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,557 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:46:53] 2025-06-04 16:39:49,557 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,557 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:46:53] 2025-06-04 16:39:49,557 | INFO     | job 6678212661 has completed (purged errors)
[2025-06-04 18:46:53] 2025-06-04 16:39:49,557 | INFO     | overall cleanup function is called
[2025-06-04 18:46:53] 2025-06-04 16:39:50,566 | INFO     | --- collectZombieJob: --- 10, [11814]
[2025-06-04 18:46:53] 2025-06-04 16:39:50,566 | INFO     | zombie collector waiting for pid 11814
[2025-06-04 18:46:53] 2025-06-04 16:39:50,567 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:46:53] 2025-06-04 16:39:50,567 | INFO     | collected zombie processes
[2025-06-04 18:46:53] 2025-06-04 16:39:50,567 | INFO     | will attempt to kill all subprocesses of pid=11814
[2025-06-04 18:46:53] 2025-06-04 16:39:50,720 | INFO     | process IDs to be killed: [11814] (in reverse order)
[2025-06-04 18:46:53] 2025-06-04 16:39:50,873 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:46:53] 2025-06-04 16:39:50,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:46:53] 2025-06-04 16:39:50,877 | INFO     | did not find any defunct processes belonging to 11814
[2025-06-04 18:46:53] 2025-06-04 16:39:50,880 | INFO     | did not find any defunct processes belonging to 11814
[2025-06-04 18:46:53] 2025-06-04 16:39:50,880 | INFO     | ready for new job
[2025-06-04 18:46:53] 2025-06-04 16:39:50,880 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:46:53] 2025-06-04 16:39:50,882 | INFO     | **************************************
[2025-06-04 18:46:53] 2025-06-04 16:39:50,883 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:46:53] 2025-06-04 16:39:50,883 | INFO     | **************************************
[2025-06-04 18:46:53] 2025-06-04 16:39:50,883 | INFO     | 
[2025-06-04 18:46:53] 2025-06-04 16:39:50,883 | INFO     | pilot is running in a VM
[2025-06-04 18:46:53] 2025-06-04 16:39:50,883 | INFO     | architecture information:
[2025-06-04 18:46:53] 2025-06-04 16:39:50,888 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:46:53] 2025-06-04 16:39:51,008 | INFO     | cat /etc/os-release:
[2025-06-04 18:46:53] NAME="CentOS Linux"
[2025-06-04 18:46:53] VERSION="7 (Core)"
[2025-06-04 18:46:53] ID="centos"
[2025-06-04 18:46:53] ID_LIKE="rhel fedora"
[2025-06-04 18:46:53] VERSION_ID="7"
[2025-06-04 18:46:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:46:53] ANSI_COLOR="0;31"
[2025-06-04 18:46:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:46:53] HOME_URL="https://www.centos.org/"
[2025-06-04 18:46:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:46:53] 
[2025-06-04 18:46:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:46:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:46:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:46:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:46:53] 
[2025-06-04 18:46:53] 2025-06-04 16:39:51,008 | INFO     | **************************************
[2025-06-04 18:46:53] 2025-06-04 16:39:51,512 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-04 18:46:53] 2025-06-04 16:39:51,720 | INFO     | sufficient remaining disk space (497227399168 B)
[2025-06-04 18:46:53] 2025-06-04 16:39:51,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:46:53] 2025-06-04 16:39:51,720 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:46:53] 2025-06-04 16:39:51,721 | INFO     | update_server=False
[2025-06-04 18:46:53] 2025-06-04 16:39:51,721 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:46:53] 2025-06-04 16:39:51,721 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:46:53] 2025-06-04 16:39:51,935 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:46:53] 2025-06-04 16:39:51,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:46:53] 2025-06-04 16:39:51,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:46:53] 2025-06-04 16:39:52,082 | INFO     | all payload control threads have been joined
[2025-06-04 18:46:53] 2025-06-04 16:39:52,446 | INFO     | all data control threads have been joined
[2025-06-04 18:46:53] 2025-06-04 16:39:52,494 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:46:53] 2025-06-04 16:39:52,494 | INFO     | aborting loop
[2025-06-04 18:46:53] 2025-06-04 16:39:52,621 | INFO     | all job control threads have been joined
[2025-06-04 18:46:53] 2025-06-04 16:39:52,726 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:52,900 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:52,923 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,088 | INFO     | [payload] control thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:46:53] 2025-06-04 16:39:53,371 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,452 | INFO     | [data] control thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,499 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,628 | INFO     | [job] control thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,728 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,873 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,981 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,982 | INFO     | [job] validate thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:53,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:46:53] 2025-06-04 16:39:54,232 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:55,004 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:57,218 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:46:53] 2025-06-04 16:39:57,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140193025439552)>', '<ExcThread(monitor, started 140192723740416)>']
[2025-06-04 18:46:53] 2025-06-04 16:39:57,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:46:53] 2025-06-04 16:39:57,970 | INFO     | [monitor] control thread has ended
[2025-06-04 18:46:53] 2025-06-04 16:40:02,404 | INFO     | all workflow threads have been joined
[2025-06-04 18:46:53] 2025-06-04 16:40:02,404 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:46:53] 2025-06-04 16:40:02,405 | INFO     | traces error code: 0
[2025-06-04 18:46:53] 2025-06-04 16:40:02,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:46:53] 2025-06-04 16:40:02,732 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:46:53] 2025-06-04 16:40:02,800 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:46:53] 2025-06-04 16:40:02,831 [wrapper] pilotpid: 5201
[2025-06-04 18:46:53] 2025-06-04 16:40:02,876 [wrapper] Pilot exit status: 0
[2025-06-04 18:46:53] 2025-06-04 16:40:03,324 [wrapper] pandaids: 6678212661
[2025-06-04 18:46:53] 2025-06-04 16:40:03,787 [wrapper] cleanup supervisor_pilot  8364 5202
[2025-06-04 18:46:53] 2025-06-04 16:40:03,863 [wrapper] Test setup, not cleaning
[2025-06-04 18:46:53] 2025-06-04 16:40:03,951 [wrapper] apfmon messages muted
[2025-06-04 18:46:53] 2025-06-04 16:40:04,043 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:46:53] 2025-06-04 16:40:04,103 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:46:53]  *** Error codes and diagnostics ***
[2025-06-04 18:46:53]     "exeErrorCode": 0,
[2025-06-04 18:46:53]     "exeErrorDiag": "",
[2025-06-04 18:46:53]     "pilotErrorCode": 0,
[2025-06-04 18:46:53]     "pilotErrorDiag": "",
[2025-06-04 18:46:53]  *** Listing of results directory ***
[2025-06-04 18:46:53] total 391252
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:42 pilot3.tar.gz
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc      5111 Jun  4 01:46 queuedata.json
[2025-06-04 18:46:53] -rwx------. 1 boinc boinc     37140 Jun  4 01:46 runpilot2-wrapper.sh
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc       100 Jun  4 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:46:53] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 14:41 run_atlas
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc       105 Jun  4 14:41 job.xml
[2025-06-04 18:46:53] -rw-r--r--. 2 boinc boinc 215047511 Jun  4 14:41 EVNT.45006593._001946.pool.root.1
[2025-06-04 18:46:53] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:41 start_atlas.sh
[2025-06-04 18:46:53] drwxrwx--x. 2 boinc boinc        68 Jun  4 14:41 shared
[2025-06-04 18:46:53] -rw-r--r--. 2 boinc boinc    508878 Jun  4 14:41 input.tar.gz
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc      6392 Jun  4 14:41 init_data.xml
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc         0 Jun  4 14:41 boinc_lockfile
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc      2524 Jun  4 14:42 pandaJob.out
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc    986811 Jun  4 14:45 agis_schedconf.cvmfs.json
[2025-06-04 18:46:53] drwx------. 4 boinc boinc      4096 Jun  4 14:45 pilot3
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc 178594065 Jun  4 18:37 HITS.45006595._048520.pool.root.1
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc       530 Jun  4 18:37 boinc_task_state.xml
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc      1017 Jun  4 18:38 memory_monitor_summary.json
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc   1598969 Jun  4 18:38 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc    388927 Jun  4 18:38 log.45006595._048520.job.log.tgz.1
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc        95 Jun  4 18:39 pilot_heartbeat.json
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc      7689 Jun  4 18:39 heartbeat.json
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc      4417 Jun  4 18:40 pilotlog.txt
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc   1204720 Jun  4 18:40 log.45006595._048520.job.log.1
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc       357 Jun  4 18:40 output.list
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc       620 Jun  4 18:40 runtime_log
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc   1607680 Jun  4 18:40 result.tar.gz
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc      8673 Jun  4 18:40 runtime_log.err
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc       656 Jun  4 18:40 8EmKDmOWqg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgXmKDmBZur1m.diag
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:46 boinc_mmap_file
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:46 wrapper_checkpoint.txt
[2025-06-04 18:46:53] -rw-r--r--. 1 boinc boinc     20527 Jun  4 18:46 stderr.txt
[2025-06-04 18:46:53] HITS file was successfully produced:
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc 178594065 Jun  4 18:37 shared/HITS.pool.root.1
[2025-06-04 18:46:53]  *** Contents of shared directory: ***
[2025-06-04 18:46:53] total 386508
[2025-06-04 18:46:53] -rw-r--r--. 2 boinc boinc 215047511 Jun  4 14:41 ATLAS.root_0
[2025-06-04 18:46:53] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:41 start_atlas.sh
[2025-06-04 18:46:53] -rw-r--r--. 2 boinc boinc    508878 Jun  4 14:41 input.tar.gz
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc 178594065 Jun  4 18:37 HITS.pool.root.1
[2025-06-04 18:46:53] -rw-------. 1 boinc boinc   1607680 Jun  4 18:40 result.tar.gz
18:46:55 (29079): run_atlas exited; CPU time 49842.748925
18:46:55 (29079): called boinc_finish(0)

</stderr_txt>
]]>

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