Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:48:30 (535980): wrapper (7.7.26015): starting
00:48:30 (535980): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 00:48:30] Arguments: --nthreads 10
[2025-06-04 00:48:30] Threads: 10
[2025-06-04 00:48:30] Checking for CVMFS
[2025-06-04 00:48:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:48:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:48:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:48:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:48:30] 2.12.6.0 814677 90183 883888 146768 0 158 18422624 21551105 16029 16776704 1 297007915 99.331 539702198 27508 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 00:48:30] CVMFS is ok
[2025-06-04 00:48:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 00:48:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 00:48:30] Further information can be found at the LHC@home message board.
[2025-06-04 00:48:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:48:30] Checking for apptainer binary...
[2025-06-04 00:48:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:48:30] Running /usr/bin/apptainer --version
[2025-06-04 00:48:30] apptainer version 1.4.1-1.el9
[2025-06-04 00:48:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 00:48:31] c-16-30.aglt2.org
[2025-06-04 00:48:31] apptainer works
[2025-06-04 00:48:31] Set ATHENA_PROC_NUMBER=10
[2025-06-04 00:48:31] Set ATHENA_CORE_NUMBER=10
[2025-06-04 00:48:31] Starting ATLAS job with PandaID=6678212551
[2025-06-04 00:48:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/condor/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 04:41:05]  *** The last 200 lines of the pilot log: ***
[2025-06-04 04:41:05] 2025-06-04 08:40:51,307 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 04:41:05] 2025-06-04 08:40:51,308 | INFO     | using path: /var/lib/condor/boinchome/slots/0/PanDA_Pilot-6678212551/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,309 | INFO     | extracted standard info from prmon json
[2025-06-04 04:41:05] 2025-06-04 08:40:51,309 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 04:41:05] 2025-06-04 08:40:51,309 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 04:41:05] 2025-06-04 08:40:51,310 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 04:41:05] 2025-06-04 08:40:51,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 04:41:05] 2025-06-04 08:40:51,316 | INFO     | fitting pss+swap vs Time
[2025-06-04 04:41:05] 2025-06-04 08:40:51,317 | INFO     | sum of square deviations: 3675189846.785111
[2025-06-04 04:41:05] 2025-06-04 08:40:51,319 | INFO     | sum of deviations: 49474678198.01753
[2025-06-04 04:41:05] 2025-06-04 08:40:51,320 | INFO     | mean x: 1749019479.0307016
[2025-06-04 04:41:05] 2025-06-04 08:40:51,320 | INFO     | mean y: 2230091.1403508773
[2025-06-04 04:41:05] 2025-06-04 08:40:51,320 | INFO     | -- intersect: -23542723909.753685
[2025-06-04 04:41:05] 2025-06-04 08:40:51,320 | INFO     | intersect: -23542723909.753685
[2025-06-04 04:41:05] 2025-06-04 08:40:51,321 | INFO     | chi2: 3.304486590659503
[2025-06-04 04:41:05] 2025-06-04 08:40:51,321 | INFO     | sum of square deviations: 3438701385.345283
[2025-06-04 04:41:05] 2025-06-04 08:40:51,323 | INFO     | sum of deviations: 49115880338.39014
[2025-06-04 04:41:05] 2025-06-04 08:40:51,323 | INFO     | mean x: 1749019326.5426009
[2025-06-04 04:41:05] 2025-06-04 08:40:51,323 | INFO     | mean y: 2229862.3273542603
[2025-06-04 04:41:05] 2025-06-04 08:40:51,324 | INFO     | -- intersect: -24979475242.424664
[2025-06-04 04:41:05] 2025-06-04 08:40:51,324 | INFO     | intersect: -24979475242.424664
[2025-06-04 04:41:05] 2025-06-04 08:40:51,324 | INFO     | chi2: 3.303525500195057
[2025-06-04 04:41:05] 2025-06-04 08:40:51,324 | INFO     | current chi2=3.303525500195057 (change=0.029084411090138863 %)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,324 | INFO     | right removable region: 222
[2025-06-04 04:41:05] 2025-06-04 08:40:51,325 | INFO     | sum of square deviations: 3438627575.345283
[2025-06-04 04:41:05] 2025-06-04 08:40:51,327 | INFO     | sum of deviations: 2021008285.1165938
[2025-06-04 04:41:05] 2025-06-04 08:40:51,327 | INFO     | mean x: 1749019631.5426009
[2025-06-04 04:41:05] 2025-06-04 08:40:51,327 | INFO     | mean y: 2260581.0403587446
[2025-06-04 04:41:05] 2025-06-04 08:40:51,328 | INFO     | -- intersect: -1025702781.8789973
[2025-06-04 04:41:05] 2025-06-04 08:40:51,328 | INFO     | intersect: -1025702781.8789973
[2025-06-04 04:41:05] 2025-06-04 08:40:51,328 | INFO     | chi2: 1.0574753547060978
[2025-06-04 04:41:05] 2025-06-04 08:40:51,328 | INFO     | current chi2=1.0574753547060978 (change=67.99880024645374 %)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,329 | INFO     | sum of square deviations: 3212437591.339445
[2025-06-04 04:41:05] 2025-06-04 08:40:51,331 | INFO     | sum of deviations: -24677767024.266056
[2025-06-04 04:41:05] 2025-06-04 08:40:51,331 | INFO     | mean x: 1749019784.0550458
[2025-06-04 04:41:05] 2025-06-04 08:40:51,331 | INFO     | mean y: 2278545.1055045873
[2025-06-04 04:41:05] 2025-06-04 08:40:51,331 | INFO     | -- intersect: 13438151312.907955
[2025-06-04 04:41:05] 2025-06-04 08:40:51,331 | INFO     | intersect: 13438151312.907955
[2025-06-04 04:41:05] 2025-06-04 08:40:51,332 | INFO     | chi2: 0.3583782855607136
[2025-06-04 04:41:05] 2025-06-04 08:40:51,332 | INFO     | current chi2=0.3583782855607136 (change=66.11001060537085 %)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,332 | INFO     | sum of square deviations: 2996387332.2629023
[2025-06-04 04:41:05] 2025-06-04 08:40:51,334 | INFO     | sum of deviations: -24285216033.54459
[2025-06-04 04:41:05] 2025-06-04 08:40:51,335 | INFO     | mean x: 1749019936.5680752
[2025-06-04 04:41:05] 2025-06-04 08:40:51,335 | INFO     | mean y: 2278210.0375586855
[2025-06-04 04:41:05] 2025-06-04 08:40:51,335 | INFO     | -- intersect: 14177791018.141163
[2025-06-04 04:41:05] 2025-06-04 08:40:51,335 | INFO     | intersect: 14177791018.141163
[2025-06-04 04:41:05] 2025-06-04 08:40:51,336 | INFO     | chi2: 0.31794449549014514
[2025-06-04 04:41:05] 2025-06-04 08:40:51,336 | INFO     | current chi2=0.31794449549014514 (change=11.282433032265425 %)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,336 | INFO     | left removable region: 30
[2025-06-04 04:41:05] 2025-06-04 08:40:51,336 | INFO     | sum of square deviations: 2194653342.9791527
[2025-06-04 04:41:05] 2025-06-04 08:40:51,338 | INFO     | sum of deviations: 4270742597.5624948
[2025-06-04 04:41:05] 2025-06-04 08:40:51,338 | INFO     | mean x: 1749020211.0729167
[2025-06-04 04:41:05] 2025-06-04 08:40:51,338 | INFO     | mean y: 2257098.03125
[2025-06-04 04:41:05] 2025-06-04 08:40:51,338 | INFO     | -- intersect: -3401294147.6917543
[2025-06-04 04:41:05] 2025-06-04 08:40:51,338 | INFO     | intersect: -3401294147.6917543
[2025-06-04 04:41:05] 2025-06-04 08:40:51,339 | INFO     | chi2: 0.04156101596770537
[2025-06-04 04:41:05] 2025-06-04 08:40:51,339 | INFO     | -- intersect: -3401294147.6917543
[2025-06-04 04:41:05] 2025-06-04 08:40:51,339 | INFO     | current memory leak: 1.95 B/s (using 192 data points, chi2=0.04)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,340 | INFO     | ..............................
[2025-06-04 04:41:05] 2025-06-04 08:40:51,340 | INFO     | . Timing measurements:
[2025-06-04 04:41:05] 2025-06-04 08:40:51,341 | INFO     | . get job = 0 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,341 | INFO     | . initial setup = 3 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,341 | INFO     | . payload setup = 9 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,341 | INFO     | . stage-in = 0 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,341 | INFO     | . payload execution = 13887 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,341 | INFO     | . stage-out = 2 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,342 | INFO     | . log creation = 0 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,342 | INFO     | ..............................
[2025-06-04 04:41:05] 2025-06-04 08:40:51,492 | INFO     | 
[2025-06-04 04:41:05] 2025-06-04 08:40:51,493 | INFO     | job summary report
[2025-06-04 04:41:05] 2025-06-04 08:40:51,493 | INFO     | --------------------------------------------------
[2025-06-04 04:41:05] 2025-06-04 08:40:51,493 | INFO     | PanDA job id: 6678212551
[2025-06-04 04:41:05] 2025-06-04 08:40:51,493 | INFO     | task id: 45006595
[2025-06-04 04:41:05] 2025-06-04 08:40:51,493 | INFO     | errors: (none)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,493 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 04:41:05] 2025-06-04 08:40:51,494 | INFO     | pilot state: finished 
[2025-06-04 04:41:05] 2025-06-04 08:40:51,494 | INFO     | transexitcode: 0
[2025-06-04 04:41:05] 2025-06-04 08:40:51,494 | INFO     | exeerrorcode: 0
[2025-06-04 04:41:05] 2025-06-04 08:40:51,494 | INFO     | exeerrordiag: 
[2025-06-04 04:41:05] 2025-06-04 08:40:51,494 | INFO     | exitcode: 0
[2025-06-04 04:41:05] 2025-06-04 08:40:51,494 | INFO     | exitmsg: OK
[2025-06-04 04:41:05] 2025-06-04 08:40:51,494 | INFO     | cpuconsumptiontime: 71254 s
[2025-06-04 04:41:05] 2025-06-04 08:40:51,495 | INFO     | nevents: 400
[2025-06-04 04:41:05] 2025-06-04 08:40:51,495 | INFO     | neventsw: 0
[2025-06-04 04:41:05] 2025-06-04 08:40:51,495 | INFO     | pid: 548505
[2025-06-04 04:41:05] 2025-06-04 08:40:51,495 | INFO     | pgrp: 548505
[2025-06-04 04:41:05] 2025-06-04 08:40:51,495 | INFO     | corecount: 10
[2025-06-04 04:41:05] 2025-06-04 08:40:51,495 | INFO     | event service: False
[2025-06-04 04:41:05] 2025-06-04 08:40:51,495 | INFO     | sizes: {0: 2405024, 1: 2405223, 6: 2405429, 12: 2405457, 13900: 2435412, 13901: 2435411, 13903: 2444614, 13910: 2444728}
[2025-06-04 04:41:05] 2025-06-04 08:40:51,496 | INFO     | --------------------------------------------------
[2025-06-04 04:41:05] 2025-06-04 08:40:51,496 | INFO     | 
[2025-06-04 04:41:05] 2025-06-04 08:40:51,496 | INFO     | executing command: ls -lF /var/lib/condor/boinchome/slots/0
[2025-06-04 04:41:05] 2025-06-04 08:40:51,520 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,520 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,522 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,522 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,523 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,523 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,523 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 04:41:05] 2025-06-04 08:40:51,523 | INFO     | job 6678212551 has completed (purged errors)
[2025-06-04 04:41:05] 2025-06-04 08:40:51,523 | INFO     | overall cleanup function is called
[2025-06-04 04:41:05] 2025-06-04 08:40:52,532 | INFO     | --- collectZombieJob: --- 10, [548505]
[2025-06-04 04:41:05] 2025-06-04 08:40:52,532 | INFO     | zombie collector waiting for pid 548505
[2025-06-04 04:41:05] 2025-06-04 08:40:52,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 04:41:05] 2025-06-04 08:40:52,532 | INFO     | collected zombie processes
[2025-06-04 04:41:05] 2025-06-04 08:40:52,532 | INFO     | will attempt to kill all subprocesses of pid=548505
[2025-06-04 04:41:05] 2025-06-04 08:40:53,047 | INFO     | process IDs to be killed: [548505] (in reverse order)
[2025-06-04 04:41:05] 2025-06-04 08:40:53,172 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 04:41:05] 2025-06-04 08:40:53,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 04:41:05] 2025-06-04 08:40:53,192 | INFO     | did not find any defunct processes belonging to 548505
[2025-06-04 04:41:05] 2025-06-04 08:40:53,212 | INFO     | did not find any defunct processes belonging to 548505
[2025-06-04 04:41:05] 2025-06-04 08:40:53,212 | INFO     | ready for new job
[2025-06-04 04:41:05] 2025-06-04 08:40:53,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 04:41:05] 2025-06-04 08:40:53,214 | INFO     | **************************************
[2025-06-04 04:41:05] 2025-06-04 08:40:53,215 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 04:41:05] 2025-06-04 08:40:53,215 | INFO     | **************************************
[2025-06-04 04:41:05] 2025-06-04 08:40:53,215 | INFO     | 
[2025-06-04 04:41:05] 2025-06-04 08:40:53,230 | INFO     | architecture information:
[2025-06-04 04:41:05] 2025-06-04 08:40:53,230 | INFO     | executing command: cat /etc/os-release
[2025-06-04 04:41:05] 2025-06-04 08:40:53,247 | INFO     | cat /etc/os-release:
[2025-06-04 04:41:05] NAME="CentOS Linux"
[2025-06-04 04:41:05] VERSION="7 (Core)"
[2025-06-04 04:41:05] ID="centos"
[2025-06-04 04:41:05] ID_LIKE="rhel fedora"
[2025-06-04 04:41:05] VERSION_ID="7"
[2025-06-04 04:41:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 04:41:05] ANSI_COLOR="0;31"
[2025-06-04 04:41:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 04:41:05] HOME_URL="https://www.centos.org/"
[2025-06-04 04:41:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 04:41:05] 
[2025-06-04 04:41:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 04:41:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 04:41:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 04:41:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 04:41:05] 
[2025-06-04 04:41:05] 2025-06-04 08:40:53,247 | INFO     | **************************************
[2025-06-04 04:41:05] 2025-06-04 08:40:53,750 | INFO     | executing command: df -mP /var/lib/condor/boinchome/slots/0
[2025-06-04 04:41:05] 2025-06-04 08:40:53,768 | INFO     | sufficient remaining disk space (1857823965184 B)
[2025-06-04 04:41:05] 2025-06-04 08:40:53,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 04:41:05] 2025-06-04 08:40:53,768 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 04:41:05] 2025-06-04 08:40:53,769 | INFO     | update_server=False
[2025-06-04 04:41:05] 2025-06-04 08:40:53,769 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 04:41:05] 2025-06-04 08:40:54,065 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 04:41:05] 2025-06-04 08:40:54,065 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 04:41:05] 2025-06-04 08:40:54,065 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 04:41:05] 2025-06-04 08:40:54,365 | INFO     | all data control threads have been joined
[2025-06-04 04:41:05] 2025-06-04 08:40:54,518 | INFO     | all payload control threads have been joined
[2025-06-04 04:41:05] 2025-06-04 08:40:54,537 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:41:05] 2025-06-04 08:40:54,537 | INFO     | aborting loop
[2025-06-04 04:41:05] 2025-06-04 08:40:54,774 | INFO     | [job] retrieve thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:54,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 04:41:05] 2025-06-04 08:40:54,987 | INFO     | all job control threads have been joined
[2025-06-04 04:41:05] 2025-06-04 08:40:55,039 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 04:41:05] 2025-06-04 08:40:55,214 | INFO     | [payload] failed_post thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,311 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,370 | INFO     | [data] control thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,483 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,523 | INFO     | [payload] control thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,542 | INFO     | [job] job monitor thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,766 | INFO     | [payload] validate_post thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,915 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:55,993 | INFO     | [job] control thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:56,013 | INFO     | [job] validate thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:56,092 | INFO     | [data] copytool_in thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:56,092 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:56,506 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 04:41:05] 2025-06-04 08:40:56,916 | INFO     | [data] copytool_out thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:57,511 | INFO     | [job] queue monitor thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:40:59,048 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 04:41:05] 2025-06-04 08:41:00,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088303953728)>', '<ExcThread(monitor, started 140087664830208)>']
[2025-06-04 04:41:05] 2025-06-04 08:41:01,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 04:41:05] 2025-06-04 08:41:01,107 | INFO     | [monitor] control thread has ended
[2025-06-04 04:41:05] 2025-06-04 08:41:05,502 | INFO     | all workflow threads have been joined
[2025-06-04 04:41:05] 2025-06-04 08:41:05,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 04:41:05] 2025-06-04 08:41:05,503 | INFO     | traces error code: 0
[2025-06-04 04:41:05] 2025-06-04 08:41:05,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 04:41:05] 2025-06-04 08:41:05,720 [wrapper] ==== pilot stdout END ====
[2025-06-04 04:41:05] 2025-06-04 08:41:05,724 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 04:41:05] 2025-06-04 08:41:05,727 [wrapper] pilotpid: 541670
[2025-06-04 04:41:05] 2025-06-04 08:41:05,736 [wrapper] Pilot exit status: 0
[2025-06-04 04:41:05] 2025-06-04 08:41:05,751 [wrapper] pandaids: 6678212551
[2025-06-04 04:41:05] 2025-06-04 08:41:05,846 [wrapper] cleanup supervisor_pilot 1872770 541671
[2025-06-04 04:41:05] 2025-06-04 08:41:05,850 [wrapper] Test setup, not cleaning
[2025-06-04 04:41:05] 2025-06-04 08:41:05,854 [wrapper] apfmon messages muted
[2025-06-04 04:41:05] 2025-06-04 08:41:05,858 [wrapper] ==== wrapper stdout END ====
[2025-06-04 04:41:05] 2025-06-04 08:41:05,862 [wrapper] ==== wrapper stderr END ====
[2025-06-04 04:41:05]  *** Error codes and diagnostics ***
[2025-06-04 04:41:05]     "exeErrorCode": 0,
[2025-06-04 04:41:05]     "exeErrorDiag": "",
[2025-06-04 04:41:05]     "pilotErrorCode": 0,
[2025-06-04 04:41:05]     "pilotErrorDiag": "",
[2025-06-04 04:41:05]  *** Listing of results directory ***
[2025-06-04 04:41:05] total 397212
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:42 pilot3.tar.gz
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 19:45 queuedata.json
[2025-06-04 04:41:05] -rwx------. 1 boincer umatlas     37140 Jun  3 19:45 runpilot2-wrapper.sh
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas       100 Jun  4 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 04:41:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 00:48 run_atlas
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas       105 Jun  4 00:48 job.xml
[2025-06-04 04:41:05] -rw-r--r--. 2 boincer umatlas 217218916 Jun  4 00:48 EVNT.45006593._001942.pool.root.1
[2025-06-04 04:41:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 00:48 start_atlas.sh
[2025-06-04 04:41:05] drwxrwx--x. 2 boincer umatlas        68 Jun  4 00:48 shared
[2025-06-04 04:41:05] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 00:48 input.tar.gz
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas         0 Jun  4 00:48 boinc_lockfile
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 00:48 pandaJob.out
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas    986745 Jun  4 00:48 agis_schedconf.cvmfs.json
[2025-06-04 04:41:05] drwx------. 4 boincer umatlas      4096 Jun  4 00:48 pilot3
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas      6549 Jun  4 04:37 init_data.xml
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas 182543511 Jun  4 04:40 HITS.45006595._048410.pool.root.1
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas       530 Jun  4 04:40 boinc_task_state.xml
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas        95 Jun  4 04:40 pilot_heartbeat.json
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas      1038 Jun  4 04:40 memory_monitor_summary.json
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas   1603667 Jun  4 04:40 agis_ddmendpoints.agis.ALL.json
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas    411894 Jun  4 04:40 log.45006595._048410.job.log.tgz.1
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas      7711 Jun  4 04:40 heartbeat.json
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas        28 Jun  4 04:41 wrapper_checkpoint.txt
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 04:41 boinc_mmap_file
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas      4366 Jun  4 04:41 pilotlog.txt
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas   1164760 Jun  4 04:41 log.45006595._048410.job.log.1
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas       357 Jun  4 04:41 output.list
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas       620 Jun  4 04:41 runtime_log
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas   1597440 Jun  4 04:41 result.tar.gz
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas       656 Jun  4 04:41 zv0KDm4Uqg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmoJaKDmZuL4jm.diag
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas      8811 Jun  4 04:41 runtime_log.err
[2025-06-04 04:41:05] -rw-r--r--. 1 boincer umatlas     20953 Jun  4 04:41 stderr.txt
[2025-06-04 04:41:05] HITS file was successfully produced:
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas 182543511 Jun  4 04:40 shared/HITS.pool.root.1
[2025-06-04 04:41:05]  *** Contents of shared directory: ***
[2025-06-04 04:41:05] total 392476
[2025-06-04 04:41:05] -rw-r--r--. 2 boincer umatlas 217218916 Jun  4 00:48 ATLAS.root_0
[2025-06-04 04:41:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 00:48 start_atlas.sh
[2025-06-04 04:41:05] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 00:48 input.tar.gz
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas 182543511 Jun  4 04:40 HITS.pool.root.1
[2025-06-04 04:41:05] -rw-------. 1 boincer umatlas   1597440 Jun  4 04:41 result.tar.gz
04:41:07 (535980): run_atlas exited; CPU time 71962.526880
04:41:07 (535980): called boinc_finish(0)

</stderr_txt>
]]>

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