Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:37:19 (720814): wrapper (7.7.26015): starting
15:37:19 (720814): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 15:37:19] Arguments: --nthreads 4
[2025-06-04 15:37:19] Threads: 4
[2025-06-04 15:37:19] Checking for CVMFS
[2025-06-04 15:37:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:37:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:37:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:37:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:37:20] 2.9.2.0 3943357 2496 95716 146781 2 55 31536336 36864000 0 130560 0 2596219 99.993 601302 36284 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 15:37:20] CVMFS is ok
[2025-06-04 15:37:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 15:37:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 15:37:20] Further information can be found at the LHC@home message board.
[2025-06-04 15:37:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:37:20] Checking for apptainer binary...
[2025-06-04 15:37:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:37:20] Running /usr/bin/apptainer --version
[2025-06-04 15:37:20] apptainer version 1.3.6-6.1
[2025-06-04 15:37:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:37:20] thA319a
[2025-06-04 15:37:20] apptainer works
[2025-06-04 15:37:20] Set ATHENA_PROC_NUMBER=4
[2025-06-04 15:37:20] Set ATHENA_CORE_NUMBER=4
[2025-06-04 15:37:20] Starting ATLAS job with PandaID=6678075794
[2025-06-04 15:37:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:39:06]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:39:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 16:39:06]  is_altstaged=None
[2025-06-04 16:39:06]  is_tar=False
[2025-06-04 16:39:06]  lfn=log.45006595._046401.job.log.tgz.1
[2025-06-04 16:39:06]  mtime=0
[2025-06-04 16:39:06]  protocol_id=None
[2025-06-04 16:39:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 16:39:06]  replicas=None
[2025-06-04 16:39:06]  scope=mc23_13p6TeV
[2025-06-04 16:39:06]  status=None
[2025-06-04 16:39:06]  status_code=0
[2025-06-04 16:39:06]  storage_token=
[2025-06-04 16:39:06]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678075794/log.45006595._046401.job.log.tgz.1
[2025-06-04 16:39:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/a7/log.45006595._046401.job.log.tgz.1
[2025-06-04 16:39:06]  workdir=None
[2025-06-04 16:39:06] ]
[2025-06-04 16:39:06] 2025-06-04 14:38:43,372 | INFO     | transferring file log.45006595._046401.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678075794/log.45006595._046401.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 16:39:06] 2025-06-04 14:38:43,372 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678075794/log.45006595._046401.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0464
[2025-06-04 16:39:06] 2025-06-04 14:38:43,391 | INFO     | adding to output.list: log.45006595._046401.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/a7/log.45006595._046401.job.log.tg
[2025-06-04 16:39:06] 2025-06-04 14:38:43,392 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 16:39:06] 2025-06-04 14:38:43,392 | INFO     | summary of transferred files:
[2025-06-04 16:39:06] 2025-06-04 14:38:43,392 | INFO     |  -- lfn=log.45006595._046401.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 16:39:06] 2025-06-04 14:38:43,392 | INFO     | stage-out finished correctly
[2025-06-04 16:39:06] 2025-06-04 14:38:44,419 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 16:39:06] 2025-06-04 14:38:47,156 | INFO     | job 6678075794 has state=finished
[2025-06-04 16:39:06] 2025-06-04 14:38:47,156 | INFO     | preparing for final server update for job 6678075794 in state='finished'
[2025-06-04 16:39:06] 2025-06-04 14:38:47,157 | INFO     | this job has now completed (state=finished)
[2025-06-04 16:39:06] 2025-06-04 14:38:47,157 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 16:39:06] 2025-06-04 14:38:47,157 | INFO     | log transfer has been attempted: DONE
[2025-06-04 16:39:06] 2025-06-04 14:38:47,157 | INFO     | job 6678075794 has finished - writing final server update
[2025-06-04 16:39:06] 2025-06-04 14:38:47,157 | INFO     | total number of processed events: 400 (read)
[2025-06-04 16:39:06] 2025-06-04 14:38:47,159 | INFO     | executing command: lscpu
[2025-06-04 16:39:06] 2025-06-04 14:38:47,181 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 16:39:06] 2025-06-04 14:38:47,890 | WARNING  | process 731155 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 16:39:06] 2025-06-04 14:38:47,890 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678075794/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:39:06] 2025-06-04 14:38:47,949 | INFO     | number of running child processes to parent process 731155: 1
[2025-06-04 16:39:06] 2025-06-04 14:38:47,949 | INFO     | maximum number of monitored processes: 6
[2025-06-04 16:39:06] 2025-06-04 14:38:50,452 | INFO     | monitor loop #284: job 0:6678075794 is in state 'finished'
[2025-06-04 16:39:06] 2025-06-04 14:38:50,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:39:06] 2025-06-04 14:38:50,646 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 16:39:06] 2025-06-04 14:38:50,647 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678075794/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:39:06] 2025-06-04 14:38:50,647 | INFO     | extracted standard info from prmon json
[2025-06-04 16:39:06] 2025-06-04 14:38:50,647 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:39:06] 2025-06-04 14:38:50,647 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:39:06] 2025-06-04 14:38:50,647 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:39:06] 2025-06-04 14:38:50,647 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | sum of square deviations: 46147842.0
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | sum of deviations: 229344810.99999994
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | mean x: 1749046163.0
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | mean y: 2676530.6415094337
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | -- intersect: -8689705264.448933
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | intersect: -8689705264.448933
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | chi2: 0.00021024479883955627
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | -- intersect: -8689705264.448933
[2025-06-04 16:39:06] 2025-06-04 14:38:50,648 | INFO     | current memory leak: 4.97 B/s (using 53 data points, chi2=0.00)
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | ..............................
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . Timing measurements:
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . get job = 0 s
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . initial setup = 1 s
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . payload setup = 5 s
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . stage-in = 0 s
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . payload execution = 3651 s
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . stage-out = 0 s
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | . log creation = 0 s
[2025-06-04 16:39:06] 2025-06-04 14:38:50,649 | INFO     | ..............................
[2025-06-04 16:39:06] 2025-06-04 14:38:51,061 | INFO     | 
[2025-06-04 16:39:06] 2025-06-04 14:38:51,061 | INFO     | job summary report
[2025-06-04 16:39:06] 2025-06-04 14:38:51,061 | INFO     | --------------------------------------------------
[2025-06-04 16:39:06] 2025-06-04 14:38:51,061 | INFO     | PanDA job id: 6678075794
[2025-06-04 16:39:06] 2025-06-04 14:38:51,061 | INFO     | task id: 45006595
[2025-06-04 16:39:06] 2025-06-04 14:38:51,061 | INFO     | errors: (none)
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | pilot state: finished 
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | transexitcode: 0
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | exeerrorcode: 0
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | exeerrordiag: 
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | exitcode: 0
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | exitmsg: OK
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | cpuconsumptiontime: 13770 s
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | nevents: 400
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | neventsw: 0
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | pid: 731155
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | pgrp: 731155
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | corecount: 4
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | event service: False
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | sizes: {0: 2397345, 4: 2397551, 11: 2397579, 3660: 2423314, 3661: 2432261, 3662: 2432317, 3669: 2432615}
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | --------------------------------------------------
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | 
[2025-06-04 16:39:06] 2025-06-04 14:38:51,062 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 16:39:06] 2025-06-04 14:38:51,084 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,084 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,084 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,084 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,084 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,084 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,084 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | job 6678075794 has completed (purged errors)
[2025-06-04 16:39:06] 2025-06-04 14:38:51,085 | INFO     | overall cleanup function is called
[2025-06-04 16:39:06] 2025-06-04 14:38:52,092 | INFO     | --- collectZombieJob: --- 10, [731155]
[2025-06-04 16:39:06] 2025-06-04 14:38:52,092 | INFO     | zombie collector waiting for pid 731155
[2025-06-04 16:39:06] 2025-06-04 14:38:52,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:39:06] 2025-06-04 14:38:52,092 | INFO     | collected zombie processes
[2025-06-04 16:39:06] 2025-06-04 14:38:52,092 | INFO     | will attempt to kill all subprocesses of pid=731155
[2025-06-04 16:39:06] 2025-06-04 14:38:52,139 | INFO     | process IDs to be killed: [731155] (in reverse order)
[2025-06-04 16:39:06] 2025-06-04 14:38:52,174 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:39:06] 2025-06-04 14:38:52,174 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:39:06] 2025-06-04 14:38:52,176 | INFO     | did not find any defunct processes belonging to 731155
[2025-06-04 16:39:06] 2025-06-04 14:38:52,177 | INFO     | did not find any defunct processes belonging to 731155
[2025-06-04 16:39:06] 2025-06-04 14:38:52,177 | INFO     | ready for new job
[2025-06-04 16:39:06] 2025-06-04 14:38:52,177 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:39:06] 2025-06-04 14:38:52,178 | INFO     | **************************************
[2025-06-04 16:39:06] 2025-06-04 14:38:52,178 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:39:06] 2025-06-04 14:38:52,178 | INFO     | **************************************
[2025-06-04 16:39:06] 2025-06-04 14:38:52,178 | INFO     | 
[2025-06-04 16:39:06] 2025-06-04 14:38:52,179 | INFO     | architecture information:
[2025-06-04 16:39:06] 2025-06-04 14:38:52,179 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:39:06] 2025-06-04 14:38:52,193 | INFO     | cat /etc/os-release:
[2025-06-04 16:39:06] NAME="CentOS Linux"
[2025-06-04 16:39:06] VERSION="7 (Core)"
[2025-06-04 16:39:06] ID="centos"
[2025-06-04 16:39:06] ID_LIKE="rhel fedora"
[2025-06-04 16:39:06] VERSION_ID="7"
[2025-06-04 16:39:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:39:06] ANSI_COLOR="0;31"
[2025-06-04 16:39:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:39:06] HOME_URL="https://www.centos.org/"
[2025-06-04 16:39:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:39:06] 
[2025-06-04 16:39:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:39:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:39:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:39:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:39:06] 
[2025-06-04 16:39:06] 2025-06-04 14:38:52,193 | INFO     | **************************************
[2025-06-04 16:39:06] 2025-06-04 14:38:52,696 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 16:39:06] 2025-06-04 14:38:52,715 | INFO     | sufficient remaining disk space (324132667392 B)
[2025-06-04 16:39:06] 2025-06-04 14:38:52,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:39:06] 2025-06-04 14:38:52,715 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:39:06] 2025-06-04 14:38:52,716 | INFO     | update_server=False
[2025-06-04 16:39:06] 2025-06-04 14:38:52,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:39:06] 2025-06-04 14:38:52,879 | INFO     | all payload control threads have been joined
[2025-06-04 16:39:06] 2025-06-04 14:38:52,957 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 16:39:06] 2025-06-04 14:38:52,957 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 16:39:06] 2025-06-04 14:38:52,957 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:39:06] 2025-06-04 14:38:52,957 | INFO     | will abort loop
[2025-06-04 16:39:06] 2025-06-04 14:38:53,298 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:39:06] 2025-06-04 14:38:53,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:39:06] 2025-06-04 14:38:53,299 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:39:06] 2025-06-04 14:38:53,608 | INFO     | all job control threads have been joined
[2025-06-04 16:39:06] 2025-06-04 14:38:53,645 | INFO     | all data control threads have been joined
[2025-06-04 16:39:06] 2025-06-04 14:38:53,721 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:53,753 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:53,790 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:53,882 | INFO     | [payload] control thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:53,946 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:39:06] 2025-06-04 14:38:53,962 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,079 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,222 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,461 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,610 | INFO     | [job] control thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,650 | INFO     | [data] control thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,841 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:54,973 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:39:06] 2025-06-04 14:38:55,128 | INFO     | [job] validate thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:55,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:39:06] 2025-06-04 14:38:55,952 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:56,708 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:38:58,980 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:39:06] 2025-06-04 14:39:00,944 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356612937536)>', '<ExcThread(monitor, started 140355236263680)>']
[2025-06-04 16:39:06] 2025-06-04 14:39:01,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:39:06] 2025-06-04 14:39:01,342 | INFO     | [monitor] control thread has ended
[2025-06-04 16:39:06] 2025-06-04 14:39:05,970 | INFO     | all workflow threads have been joined
[2025-06-04 16:39:06] 2025-06-04 14:39:05,970 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:39:06] 2025-06-04 14:39:05,971 | INFO     | traces error code: 0
[2025-06-04 16:39:06] 2025-06-04 14:39:05,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:39:06] 2025-06-04 14:39:06,053 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:39:06] 2025-06-04 14:39:06,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:39:06] 2025-06-04 14:39:06,061 [wrapper] pilotpid: 724517
[2025-06-04 16:39:06] 2025-06-04 14:39:06,065 [wrapper] Pilot exit status: 0
[2025-06-04 16:39:06] 2025-06-04 14:39:06,077 [wrapper] pandaids: 6678075794
[2025-06-04 16:39:06] 2025-06-04 14:39:06,100 [wrapper] cleanup supervisor_pilot  740885 724518
[2025-06-04 16:39:06] 2025-06-04 14:39:06,104 [wrapper] Test setup, not cleaning
[2025-06-04 16:39:06] 2025-06-04 14:39:06,109 [wrapper] apfmon messages muted
[2025-06-04 16:39:06] 2025-06-04 14:39:06,113 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:39:06] 2025-06-04 14:39:06,117 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:39:06]  *** Error codes and diagnostics ***
[2025-06-04 16:39:06]     "exeErrorCode": 0,
[2025-06-04 16:39:06]     "exeErrorDiag": "",
[2025-06-04 16:39:06]     "pilotErrorCode": 0,
[2025-06-04 16:39:06]     "pilotErrorDiag": "",
[2025-06-04 16:39:06]  *** Listing of results directory ***
[2025-06-04 16:39:06] total 386956
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:41 pilot3.tar.gz
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:46 queuedata.json
[2025-06-04 16:39:06] -rwx------ 1 boinc boinc     37140 Jun  3 23:46 runpilot2-wrapper.sh
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc       100 Jun  4 15:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:39:06] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 15:37 run_atlas
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc       105 Jun  4 15:37 job.xml
[2025-06-04 16:39:06] -rw-r--r-- 2 boinc boinc 214929332 Jun  4 15:37 EVNT.45006593._001861.pool.root.1
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc      6849 Jun  4 15:37 init_data.xml
[2025-06-04 16:39:06] drwxrwx--x 2 boinc boinc      4096 Jun  4 15:37 shared
[2025-06-04 16:39:06] -rw-r--r-- 2 boinc boinc    508879 Jun  4 15:37 input.tar.gz
[2025-06-04 16:39:06] -rw-r--r-- 2 boinc boinc     15093 Jun  4 15:37 start_atlas.sh
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc         0 Jun  4 15:37 boinc_lockfile
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc      2525 Jun  4 15:37 pandaJob.out
[2025-06-04 16:39:06] -rw------- 1 boinc boinc    986819 Jun  4 15:37 agis_schedconf.cvmfs.json
[2025-06-04 16:39:06] -rw------- 1 boinc boinc   1598969 Jun  4 15:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:39:06] drwx------ 4 boinc boinc      4096 Jun  4 15:37 pilot3
[2025-06-04 16:39:06] -rw------- 1 boinc boinc 176268567 Jun  4 16:38 HITS.45006595._046401.pool.root.1
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc       529 Jun  4 16:38 boinc_task_state.xml
[2025-06-04 16:39:06] -rw------- 1 boinc boinc      1018 Jun  4 16:38 memory_monitor_summary.json
[2025-06-04 16:39:06] -rw------- 1 boinc boinc    236868 Jun  4 16:38 log.45006595._046401.job.log.tgz.1
[2025-06-04 16:39:06] -rw------- 1 boinc boinc        95 Jun  4 16:38 pilot_heartbeat.json
[2025-06-04 16:39:06] -rw------- 1 boinc boinc      7654 Jun  4 16:38 heartbeat.json
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc      8192 Jun  4 16:38 boinc_mmap_file
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc        27 Jun  4 16:38 wrapper_checkpoint.txt
[2025-06-04 16:39:06] -rw------- 1 boinc boinc      4543 Jun  4 16:39 pilotlog.txt
[2025-06-04 16:39:06] -rw------- 1 boinc boinc    371090 Jun  4 16:39 log.45006595._046401.job.log.1
[2025-06-04 16:39:06] -rw------- 1 boinc boinc       357 Jun  4 16:39 output.list
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc       620 Jun  4 16:39 runtime_log
[2025-06-04 16:39:06] -rw------- 1 boinc boinc    624640 Jun  4 16:39 result.tar.gz
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc      8738 Jun  4 16:39 runtime_log.err
[2025-06-04 16:39:06] -rw------- 1 boinc boinc       659 Jun  4 16:39 U51KDmGeog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmu1ZKDm2j1ztn.diag
[2025-06-04 16:39:06] -rw-r--r-- 1 boinc boinc     21337 Jun  4 16:39 stderr.txt
[2025-06-04 16:39:06] HITS file was successfully produced:
[2025-06-04 16:39:06] -rw------- 1 boinc boinc 176268567 Jun  4 16:38 shared/HITS.pool.root.1
[2025-06-04 16:39:06]  *** Contents of shared directory: ***
[2025-06-04 16:39:06] total 383168
[2025-06-04 16:39:06] -rw-r--r-- 2 boinc boinc 214929332 Jun  4 15:37 ATLAS.root_0
[2025-06-04 16:39:06] -rw-r--r-- 2 boinc boinc    508879 Jun  4 15:37 input.tar.gz
[2025-06-04 16:39:06] -rw-r--r-- 2 boinc boinc     15093 Jun  4 15:37 start_atlas.sh
[2025-06-04 16:39:06] -rw------- 1 boinc boinc 176268567 Jun  4 16:38 HITS.pool.root.1
[2025-06-04 16:39:06] -rw------- 1 boinc boinc    624640 Jun  4 16:39 result.tar.gz
16:39:07 (720814): run_atlas exited; CPU time 13777.019519
16:39:07 (720814): called boinc_finish(0)

</stderr_txt>
]]>

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