Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:13:37 (2820652): wrapper (7.7.26015): starting
14:13:37 (2820652): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 14:13:37] Arguments: --nthreads 12
[2025-06-04 14:13:37] Threads: 12
[2025-06-04 14:13:37] Checking for CVMFS
[2025-06-04 14:13:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:13:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:13:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:14:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:14:52] 2.12.7.0 9267 7513 161516 146779 0 121 32231116 46080001 50519 130560 0 54044046 99.947 10257738 29593 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-04 14:14:52] CVMFS is ok
[2025-06-04 14:14:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 14:14:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 14:14:52] Further information can be found at the LHC@home message board.
[2025-06-04 14:14:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:14:52] Checking for apptainer binary...
[2025-06-04 14:14:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:14:52] Running /usr/bin/apptainer --version
[2025-06-04 14:14:52] apptainer version 1.4.1-1.el9
[2025-06-04 14:14:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:14:53] mff2103.farm.particle.cz
[2025-06-04 14:14:53] apptainer works
[2025-06-04 14:14:53] Set ATHENA_PROC_NUMBER=12
[2025-06-04 14:14:53] Set ATHENA_CORE_NUMBER=12
[2025-06-04 14:14:53] Starting ATLAS job with PandaID=6678075739
[2025-06-04 14:14:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:07:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:07:11] 2025-06-04 13:50:12,274 | INFO     | executing command: lscpu
[2025-06-04 16:07:11] 2025-06-04 13:50:12,544 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 16:07:11] 2025-06-04 13:50:13,059 | INFO     | monitor loop #394: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:13,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:15,565 | INFO     | monitor loop #395: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:15,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:18,074 | INFO     | monitor loop #396: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:18,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:20,590 | INFO     | monitor loop #397: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:20,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:23,129 | INFO     | monitor loop #398: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:23,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:25,018 | INFO     | PID=2847962 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 16:07:11] 2025-06-04 13:50:25,018 | INFO     | .. there are 101 such processes running
[2025-06-04 16:07:11] 2025-06-04 13:50:25,632 | INFO     | monitor loop #399: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:25,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:28,139 | INFO     | monitor loop #400: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:28,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:30,646 | INFO     | monitor loop #401: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:30,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:33,156 | INFO     | monitor loop #402: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:33,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:35,680 | INFO     | monitor loop #403: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:35,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:38,191 | INFO     | monitor loop #404: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:38,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:40,703 | INFO     | monitor loop #405: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:40,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:43,217 | INFO     | monitor loop #406: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:43,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:45,721 | INFO     | monitor loop #407: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:45,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:48,238 | INFO     | monitor loop #408: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:48,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:49,269 | INFO     | PID=2847962 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 16:07:11] 2025-06-04 13:50:49,269 | INFO     | .. there are 101 such processes running
[2025-06-04 16:07:11] 2025-06-04 13:50:50,744 | INFO     | monitor loop #409: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:50,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:53,250 | INFO     | monitor loop #410: job 0:6678075739 is in state 'finished'
[2025-06-04 16:07:11] 2025-06-04 13:50:53,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 16:07:11] 2025-06-04 13:50:53,328 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 16:07:11] 2025-06-04 13:50:53,328 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6678075739/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:07:11] 2025-06-04 13:50:53,329 | INFO     | extracted standard info from prmon json
[2025-06-04 16:07:11] 2025-06-04 13:50:53,329 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:07:11] 2025-06-04 13:50:53,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:07:11] 2025-06-04 13:50:53,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:07:11] 2025-06-04 13:50:53,330 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:07:11] 2025-06-04 13:50:53,337 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:07:11] 2025-06-04 13:50:53,338 | INFO     | sum of square deviations: 170945822.4512196
[2025-06-04 16:07:11] 2025-06-04 13:50:53,338 | INFO     | sum of deviations: 10428168139.085358
[2025-06-04 16:07:11] 2025-06-04 13:50:53,338 | INFO     | mean x: 1749042400.5243902
[2025-06-04 16:07:11] 2025-06-04 13:50:53,338 | INFO     | mean y: 2726803.2073170734
[2025-06-04 16:07:11] 2025-06-04 13:50:53,339 | INFO     | -- intersect: -106693698845.11476
[2025-06-04 16:07:11] 2025-06-04 13:50:53,339 | INFO     | intersect: -106693698845.11476
[2025-06-04 16:07:11] 2025-06-04 13:50:53,339 | INFO     | chi2: 1.9975900767695076
[2025-06-04 16:07:11] 2025-06-04 13:50:53,339 | INFO     | -- intersect: -106693698845.11476
[2025-06-04 16:07:11] 2025-06-04 13:50:53,339 | INFO     | current memory leak: 61.00 B/s (using 82 data points, chi2=2.00)
[2025-06-04 16:07:11] 2025-06-04 13:50:53,339 | INFO     | ..............................
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . Timing measurements:
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . get job = 0 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . initial setup = 6 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . payload setup = 94 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . stage-in = 0 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . payload execution = 5417 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . stage-out = 2 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,340 | INFO     | . log creation = 0 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,341 | INFO     | ..............................
[2025-06-04 16:07:11] 2025-06-04 13:50:53,645 | INFO     | 
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | job summary report
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | --------------------------------------------------
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | PanDA job id: 6678075739
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | task id: 45006595
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | errors: (none)
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | pilot state: finished 
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | transexitcode: 0
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | exeerrorcode: 0
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | exeerrordiag: 
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | exitcode: 0
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | exitmsg: OK
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | cpuconsumptiontime: 34539 s
[2025-06-04 16:07:11] 2025-06-04 13:50:53,646 | INFO     | nevents: 400
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | neventsw: 0
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | pid: 2881780
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | pgrp: 2881780
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | corecount: 12
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | event service: False
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | sizes: {0: 2397116, 1: 2397200, 2: 2397399, 13: 2397399, 24: 2397455, 35: 2397483, 45: 2397639, 49: 2397873, 56: 2397901, 5517: 2424316, 5520: 2433595, 5564: 24337
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | --------------------------------------------------
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | 
[2025-06-04 16:07:11] 2025-06-04 13:50:53,647 | INFO     | executing command: ls -lF /scratch/.boinc/slots/5
[2025-06-04 16:07:11] 2025-06-04 13:50:53,737 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,737 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,737 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,737 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,737 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,738 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,738 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,738 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,738 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,738 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,738 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | job 6678075739 has completed (purged errors)
[2025-06-04 16:07:11] 2025-06-04 13:50:53,745 | INFO     | overall cleanup function is called
[2025-06-04 16:07:11] 2025-06-04 13:50:54,760 | INFO     | --- collectZombieJob: --- 10, [2881780]
[2025-06-04 16:07:11] 2025-06-04 13:50:54,761 | INFO     | zombie collector waiting for pid 2881780
[2025-06-04 16:07:11] 2025-06-04 13:50:54,761 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:07:11] 2025-06-04 13:50:54,761 | INFO     | collected zombie processes
[2025-06-04 16:07:11] 2025-06-04 13:50:54,761 | INFO     | will attempt to kill all subprocesses of pid=2881780
[2025-06-04 16:07:11] 2025-06-04 13:50:56,049 | INFO     | process IDs to be killed: [2881780] (in reverse order)
[2025-06-04 16:07:11] 2025-06-04 13:50:56,536 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:07:11] 2025-06-04 13:50:56,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:07:11] 2025-06-04 13:50:56,575 | INFO     | did not find any defunct processes belonging to 2881780
[2025-06-04 16:07:11] 2025-06-04 13:50:56,611 | INFO     | did not find any defunct processes belonging to 2881780
[2025-06-04 16:07:11] 2025-06-04 13:50:56,611 | INFO     | ready for new job
[2025-06-04 16:07:11] 2025-06-04 13:50:56,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:07:11] 2025-06-04 13:50:56,613 | INFO     | **************************************
[2025-06-04 16:07:11] 2025-06-04 13:50:56,613 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:07:11] 2025-06-04 13:50:56,613 | INFO     | **************************************
[2025-06-04 16:07:11] 2025-06-04 13:50:56,613 | INFO     | 
[2025-06-04 16:07:11] 2025-06-04 13:50:56,619 | INFO     | architecture information:
[2025-06-04 16:07:11] 2025-06-04 13:50:56,622 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:07:11] 2025-06-04 13:50:56,716 | INFO     | cat /etc/os-release:
[2025-06-04 16:07:11] NAME="CentOS Linux"
[2025-06-04 16:07:11] VERSION="7 (Core)"
[2025-06-04 16:07:11] ID="centos"
[2025-06-04 16:07:11] ID_LIKE="rhel fedora"
[2025-06-04 16:07:11] VERSION_ID="7"
[2025-06-04 16:07:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:07:11] ANSI_COLOR="0;31"
[2025-06-04 16:07:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:07:11] HOME_URL="https://www.centos.org/"
[2025-06-04 16:07:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:07:11] 
[2025-06-04 16:07:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:07:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:07:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:07:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:07:11] 
[2025-06-04 16:07:11] 2025-06-04 13:50:56,716 | INFO     | **************************************
[2025-06-04 16:07:11] 2025-06-04 13:50:57,220 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-06-04 16:07:11] 2025-06-04 13:50:57,320 | INFO     | sufficient remaining disk space (1670478036992 B)
[2025-06-04 16:07:11] 2025-06-04 13:50:57,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:07:11] 2025-06-04 13:50:57,321 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:07:11] 2025-06-04 13:50:57,321 | INFO     | update_server=False
[2025-06-04 16:07:11] 2025-06-04 13:50:57,321 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:07:11] 2025-06-04 13:50:57,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:07:11] 2025-06-04 13:50:57,326 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:07:11] 2025-06-04 13:50:57,326 | INFO     | aborting loop
[2025-06-04 16:07:11] 2025-06-04 13:50:57,326 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 16:07:11] 2025-06-04 13:50:57,326 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:07:11] 2025-06-04 13:50:57,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:07:11] 2025-06-04 13:50:57,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:07:11] 2025-06-04 13:50:57,551 | INFO     | all data control threads have been joined
[2025-06-04 16:07:11] 2025-06-04 13:50:57,705 | INFO     | all job control threads have been joined
[2025-06-04 16:07:11] 2025-06-04 13:50:58,180 | INFO     | all payload control threads have been joined
[2025-06-04 16:07:11] 2025-06-04 13:50:58,327 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:58,334 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:58,453 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:58,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:07:11] 2025-06-04 13:50:58,558 | INFO     | [data] control thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:58,710 | INFO     | [job] control thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:58,993 | INFO     | [job] validate thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,041 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,147 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,149 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,186 | INFO     | [payload] control thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,293 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,327 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,476 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,541 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:50:59,697 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:51:00,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:07:11] 2025-06-04 13:51:04,473 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:07:11] 2025-06-04 13:51:06,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683927050048)>', '<ExcThread(monitor, started 139683124205312)>']
[2025-06-04 16:07:11] 2025-06-04 13:51:06,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:07:11] 2025-06-04 13:51:06,399 | INFO     | [monitor] control thread has ended
[2025-06-04 16:07:11] 2025-06-04 13:51:11,043 | INFO     | all workflow threads have been joined
[2025-06-04 16:07:11] 2025-06-04 13:51:11,046 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:07:11] 2025-06-04 13:51:11,046 | INFO     | traces error code: 0
[2025-06-04 16:07:11] 2025-06-04 13:51:11,046 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:07:11] 2025-06-04 13:51:11,757 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:07:11] 2025-06-04 13:51:11,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:07:11] 2025-06-04 13:51:11,825 [wrapper] pilotpid: 2847962
[2025-06-04 16:07:11] 2025-06-04 13:51:11,881 [wrapper] Pilot exit status: 0
[2025-06-04 16:07:11] 2025-06-04 13:51:12,086 [wrapper] pandaids: 6678075739
[2025-06-04 16:07:11] 2025-06-04 13:51:12,506 [wrapper] cleanup supervisor_pilot 3717540 2847963
[2025-06-04 16:07:11] 2025-06-04 13:51:12,542 [wrapper] Test setup, not cleaning
[2025-06-04 16:07:11] 2025-06-04 13:51:12,585 [wrapper] apfmon messages muted
[2025-06-04 16:07:11] 2025-06-04 13:51:12,629 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:07:11] 2025-06-04 13:51:12,655 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:07:11]  *** Error codes and diagnostics ***
[2025-06-04 16:07:11]     "exeErrorCode": 0,
[2025-06-04 16:07:11]     "exeErrorDiag": "",
[2025-06-04 16:07:11]     "pilotErrorCode": 0,
[2025-06-04 16:07:11]     "pilotErrorDiag": "",
[2025-06-04 16:07:11]  *** Listing of results directory ***
[2025-06-04 16:07:11] total 390560
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:41 pilot3.tar.gz
[2025-06-04 16:07:11] -rwx------ 1 boinc boinc     37140 Jun  3 23:49 runpilot2-wrapper.sh
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:49 queuedata.json
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc       100 Jun  4 14:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:07:11] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 14:13 run_atlas
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc       105 Jun  4 14:13 job.xml
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc      6664 Jun  4 14:13 init_data.xml
[2025-06-04 16:07:11] -rw-r--r-- 2 boinc boinc 215977871 Jun  4 14:13 EVNT.45006593._001859.pool.root.1
[2025-06-04 16:07:11] -rw-r--r-- 2 boinc boinc     15093 Jun  4 14:13 start_atlas.sh
[2025-06-04 16:07:11] drwxrwx--x 2 boinc boinc      4096 Jun  4 14:13 shared
[2025-06-04 16:07:11] -rw-r--r-- 2 boinc boinc    508871 Jun  4 14:13 input.tar.gz
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc         0 Jun  4 14:13 boinc_lockfile
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc      2525 Jun  4 14:14 pandaJob.out
[2025-06-04 16:07:11] -rw------- 1 boinc boinc    986811 Jun  4 14:16 agis_schedconf.cvmfs.json
[2025-06-04 16:07:11] -rw------- 1 boinc boinc   1598969 Jun  4 14:16 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:07:11] drwx------ 4 boinc boinc      4096 Jun  4 14:16 pilot3
[2025-06-04 16:07:11] -rw------- 1 boinc boinc 178380985 Jun  4 15:49 HITS.45006595._046346.pool.root.1
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc       528 Jun  4 15:49 boinc_task_state.xml
[2025-06-04 16:07:11] -rw------- 1 boinc boinc      1023 Jun  4 15:50 memory_monitor_summary.json
[2025-06-04 16:07:11] -rw------- 1 boinc boinc    368233 Jun  4 15:50 log.45006595._046346.job.log.tgz.1
[2025-06-04 16:07:11] -rw------- 1 boinc boinc        95 Jun  4 15:50 pilot_heartbeat.json
[2025-06-04 16:07:11] -rw------- 1 boinc boinc      7699 Jun  4 15:50 heartbeat.json
[2025-06-04 16:07:11] -rw------- 1 boinc boinc      4479 Jun  4 15:51 pilotlog.txt
[2025-06-04 16:07:11] -rw------- 1 boinc boinc    502615 Jun  4 15:51 log.45006595._046346.job.log.1
[2025-06-04 16:07:11] -rw------- 1 boinc boinc       357 Jun  4 15:51 output.list
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc       620 Jun  4 15:51 runtime_log
[2025-06-04 16:07:11] -rw------- 1 boinc boinc    890880 Jun  4 15:51 result.tar.gz
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc      8720 Jun  4 15:51 runtime_log.err
[2025-06-04 16:07:11] -rw------- 1 boinc boinc       663 Jun  4 15:51 IJXNDmNgog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmk2ZKDm4NTvVm.diag
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc      8192 Jun  4 16:07 boinc_mmap_file
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc     22596 Jun  4 16:07 stderr.txt
[2025-06-04 16:07:11] -rw-r--r-- 1 boinc boinc        26 Jun  4 16:07 wrapper_checkpoint.txt
[2025-06-04 16:07:11] HITS file was successfully produced:
[2025-06-04 16:07:11] -rw------- 1 boinc boinc 178380985 Jun  4 15:49 shared/HITS.pool.root.1
[2025-06-04 16:07:11]  *** Contents of shared directory: ***
[2025-06-04 16:07:11] total 386516
[2025-06-04 16:07:11] -rw-r--r-- 2 boinc boinc 215977871 Jun  4 14:13 ATLAS.root_0
[2025-06-04 16:07:11] -rw-r--r-- 2 boinc boinc     15093 Jun  4 14:13 start_atlas.sh
[2025-06-04 16:07:11] -rw-r--r-- 2 boinc boinc    508871 Jun  4 14:13 input.tar.gz
[2025-06-04 16:07:11] -rw------- 1 boinc boinc 178380985 Jun  4 15:49 HITS.pool.root.1
[2025-06-04 16:07:11] -rw------- 1 boinc boinc    890880 Jun  4 15:51 result.tar.gz
16:07:13 (2820652): run_atlas exited; CPU time 34883.898966
16:07:13 (2820652): called boinc_finish(0)

</stderr_txt>
]]>

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