Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:23:51 (4182834): wrapper (7.7.26015): starting
01:23:51 (4182834): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 01:23:51] Arguments: --nthreads 12
[2025-06-04 01:23:51] Threads: 12
[2025-06-04 01:23:51] Checking for CVMFS
[2025-06-04 01:23:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 01:23:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 01:23:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 01:23:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 01:23:51] 2.12.6.0 3367424 22864 455164 146769 1 66 19414138 32935937 7726 16776704 0 85670677 99.602 89112938 32540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 01:23:51] CVMFS is ok
[2025-06-04 01:23:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 01:23:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 01:23:51] Further information can be found at the LHC@home message board.
[2025-06-04 01:23:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 01:23:51] Checking for apptainer binary...
[2025-06-04 01:23:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 01:23:51] Running /usr/bin/apptainer --version
[2025-06-04 01:23:51] apptainer version 1.4.1-1.el9
[2025-06-04 01:23:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 01:23:52] c6-2-29-4.aglt2.org
[2025-06-04 01:23:52] apptainer works
[2025-06-04 01:23:52] Set ATHENA_PROC_NUMBER=12
[2025-06-04 01:23:52] Set ATHENA_CORE_NUMBER=12
[2025-06-04 01:23:52] Starting ATLAS job with PandaID=6678156228
[2025-06-04 01:23:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 02:16:43]  *** The last 200 lines of the pilot log: ***
[2025-06-04 02:16:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 02:16:43]  is_altstaged=None
[2025-06-04 02:16:43]  is_tar=False
[2025-06-04 02:16:43]  lfn=log.45006595._048215.job.log.tgz.1
[2025-06-04 02:16:43]  mtime=0
[2025-06-04 02:16:43]  protocol_id=None
[2025-06-04 02:16:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 02:16:43]  replicas=None
[2025-06-04 02:16:43]  scope=mc23_13p6TeV
[2025-06-04 02:16:43]  status=None
[2025-06-04 02:16:43]  status_code=0
[2025-06-04 02:16:43]  storage_token=
[2025-06-04 02:16:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678156228/log.45006595._048215.job.log.tgz.1
[2025-06-04 02:16:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/cb/log.45006595._048215.job.log.tgz.1
[2025-06-04 02:16:43]  workdir=None
[2025-06-04 02:16:43] ]
[2025-06-04 02:16:43] 2025-06-04 06:16:26,387 | INFO     | transferring file log.45006595._048215.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678156228/log.45006595._048215.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 02:16:43] 2025-06-04 06:16:26,388 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678156228/log.45006595._048215.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._048215.job
[2025-06-04 02:16:43] 2025-06-04 06:16:26,404 | INFO     | adding to output.list: log.45006595._048215.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/cb/log.45006595._048215.job.log.tg
[2025-06-04 02:16:43] 2025-06-04 06:16:26,405 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 02:16:43] 2025-06-04 06:16:26,405 | INFO     | summary of transferred files:
[2025-06-04 02:16:43] 2025-06-04 06:16:26,405 | INFO     |  -- lfn=log.45006595._048215.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 02:16:43] 2025-06-04 06:16:26,405 | INFO     | stage-out finished correctly
[2025-06-04 02:16:43] 2025-06-04 06:16:26,479 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 02:16:43] 2025-06-04 06:16:27,677 | INFO     | job 6678156228 has state=finished
[2025-06-04 02:16:43] 2025-06-04 06:16:27,678 | INFO     | preparing for final server update for job 6678156228 in state='finished'
[2025-06-04 02:16:43] 2025-06-04 06:16:27,679 | INFO     | this job has now completed (state=finished)
[2025-06-04 02:16:43] 2025-06-04 06:16:27,679 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 02:16:43] 2025-06-04 06:16:27,679 | INFO     | log transfer has been attempted: DONE
[2025-06-04 02:16:43] 2025-06-04 06:16:27,679 | INFO     | job 6678156228 has finished - writing final server update
[2025-06-04 02:16:43] 2025-06-04 06:16:27,680 | INFO     | total number of processed events: 400 (read)
[2025-06-04 02:16:43] 2025-06-04 06:16:27,695 | INFO     | executing command: lscpu
[2025-06-04 02:16:43] 2025-06-04 06:16:27,769 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 02:16:43] 2025-06-04 06:16:30,899 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 02:16:43] 2025-06-04 06:16:30,899 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678156228/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 02:16:43] 2025-06-04 06:16:30,900 | INFO     | extracted standard info from prmon json
[2025-06-04 02:16:43] 2025-06-04 06:16:30,900 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 02:16:43] 2025-06-04 06:16:30,900 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 02:16:43] 2025-06-04 06:16:30,901 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 02:16:43] 2025-06-04 06:16:30,901 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | fitting pss+swap vs Time
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | sum of square deviations: 28242390.0
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | sum of deviations: 3087723131.999999
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | mean x: 1749016312.0
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | mean y: 2614010.8666666667
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | -- intersect: -191216263881.82327
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | intersect: -191216263881.82327
[2025-06-04 02:16:43] 2025-06-04 06:16:30,902 | INFO     | chi2: 0.93218604527895
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | -- intersect: -191216263881.82327
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | current memory leak: 109.33 B/s (using 45 data points, chi2=0.93)
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | ..............................
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . Timing measurements:
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . get job = 0 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . initial setup = 2 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . payload setup = 5 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . stage-in = 0 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . payload execution = 3121 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . stage-out = 0 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | . log creation = 0 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,903 | INFO     | ..............................
[2025-06-04 02:16:43] 2025-06-04 06:16:30,950 | INFO     | 
[2025-06-04 02:16:43] 2025-06-04 06:16:30,950 | INFO     | job summary report
[2025-06-04 02:16:43] 2025-06-04 06:16:30,950 | INFO     | --------------------------------------------------
[2025-06-04 02:16:43] 2025-06-04 06:16:30,950 | INFO     | PanDA job id: 6678156228
[2025-06-04 02:16:43] 2025-06-04 06:16:30,950 | INFO     | task id: 45006595
[2025-06-04 02:16:43] 2025-06-04 06:16:30,950 | INFO     | errors: (none)
[2025-06-04 02:16:43] 2025-06-04 06:16:30,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | pilot state: finished 
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | transexitcode: 0
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | exeerrorcode: 0
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | exeerrordiag: 
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | exitcode: 0
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | exitmsg: OK
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | cpuconsumptiontime: 29359 s
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | nevents: 400
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | neventsw: 0
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | pid: 4193582
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | pgrp: 4193582
[2025-06-04 02:16:43] 2025-06-04 06:16:30,951 | INFO     | corecount: 12
[2025-06-04 02:16:43] 2025-06-04 06:16:30,952 | INFO     | event service: False
[2025-06-04 02:16:43] 2025-06-04 06:16:30,952 | INFO     | sizes: {0: 2405013, 1: 2405212, 4: 2405418, 11: 2405446, 3130: 2430863, 3131: 2439987, 3132: 2439987, 3136: 2440157}
[2025-06-04 02:16:43] 2025-06-04 06:16:30,952 | INFO     | --------------------------------------------------
[2025-06-04 02:16:43] 2025-06-04 06:16:30,952 | INFO     | 
[2025-06-04 02:16:43] 2025-06-04 06:16:30,952 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 02:16:43] 2025-06-04 06:16:30,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,967 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | job 6678156228 has completed (purged errors)
[2025-06-04 02:16:43] 2025-06-04 06:16:30,968 | INFO     | overall cleanup function is called
[2025-06-04 02:16:43] 2025-06-04 06:16:31,759 | WARNING  | process 4193582 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 02:16:43] 2025-06-04 06:16:31,943 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 02:16:43] 2025-06-04 06:16:31,976 | INFO     | --- collectZombieJob: --- 10, [4193582]
[2025-06-04 02:16:43] 2025-06-04 06:16:31,976 | INFO     | zombie collector waiting for pid 4193582
[2025-06-04 02:16:43] 2025-06-04 06:16:31,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 02:16:43] 2025-06-04 06:16:31,976 | INFO     | collected zombie processes
[2025-06-04 02:16:43] 2025-06-04 06:16:31,977 | INFO     | will attempt to kill all subprocesses of pid=4193582
[2025-06-04 02:16:43] 2025-06-04 06:16:32,661 | INFO     | number of running child processes to parent process 4193582: 1
[2025-06-04 02:16:43] 2025-06-04 06:16:32,662 | INFO     | maximum number of monitored processes: 6
[2025-06-04 02:16:43] 2025-06-04 06:16:32,662 | INFO     | aborting job monitoring since job object (job id=6678156228) has expired
[2025-06-04 02:16:43] 2025-06-04 06:16:32,751 | INFO     | process IDs to be killed: [4193582] (in reverse order)
[2025-06-04 02:16:43] 2025-06-04 06:16:32,828 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 02:16:43] 2025-06-04 06:16:32,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 02:16:43] 2025-06-04 06:16:32,856 | INFO     | did not find any defunct processes belonging to 4193582
[2025-06-04 02:16:43] 2025-06-04 06:16:32,884 | INFO     | did not find any defunct processes belonging to 4193582
[2025-06-04 02:16:43] 2025-06-04 06:16:32,884 | INFO     | ready for new job
[2025-06-04 02:16:43] 2025-06-04 06:16:32,884 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 02:16:43] 2025-06-04 06:16:32,886 | INFO     | **************************************
[2025-06-04 02:16:43] 2025-06-04 06:16:32,886 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 02:16:43] 2025-06-04 06:16:32,886 | INFO     | **************************************
[2025-06-04 02:16:43] 2025-06-04 06:16:32,886 | INFO     | 
[2025-06-04 02:16:43] 2025-06-04 06:16:32,901 | INFO     | architecture information:
[2025-06-04 02:16:43] 2025-06-04 06:16:32,902 | INFO     | executing command: cat /etc/os-release
[2025-06-04 02:16:43] 2025-06-04 06:16:32,916 | INFO     | cat /etc/os-release:
[2025-06-04 02:16:43] NAME="CentOS Linux"
[2025-06-04 02:16:43] VERSION="7 (Core)"
[2025-06-04 02:16:43] ID="centos"
[2025-06-04 02:16:43] ID_LIKE="rhel fedora"
[2025-06-04 02:16:43] VERSION_ID="7"
[2025-06-04 02:16:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 02:16:43] ANSI_COLOR="0;31"
[2025-06-04 02:16:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 02:16:43] HOME_URL="https://www.centos.org/"
[2025-06-04 02:16:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 02:16:43] 
[2025-06-04 02:16:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 02:16:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 02:16:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 02:16:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 02:16:43] 
[2025-06-04 02:16:43] 2025-06-04 06:16:32,916 | INFO     | **************************************
[2025-06-04 02:16:43] 2025-06-04 06:16:32,931 | INFO     | PID=4186465 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 02:16:43] 2025-06-04 06:16:32,932 | INFO     | .. there are 8 such processes running
[2025-06-04 02:16:43] 2025-06-04 06:16:33,419 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 02:16:43] 2025-06-04 06:16:33,429 | INFO     | sufficient remaining disk space (76375130112 B)
[2025-06-04 02:16:43] 2025-06-04 06:16:33,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 02:16:43] 2025-06-04 06:16:33,430 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 02:16:43] 2025-06-04 06:16:33,430 | INFO     | update_server=False
[2025-06-04 02:16:43] 2025-06-04 06:16:33,430 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 02:16:43] 2025-06-04 06:16:33,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 02:16:43] 2025-06-04 06:16:33,431 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:16:43] 2025-06-04 06:16:33,431 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 02:16:43] 2025-06-04 06:16:33,431 | INFO     | will abort loop
[2025-06-04 02:16:43] 2025-06-04 06:16:33,431 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 02:16:43] 2025-06-04 06:16:33,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 02:16:43] 2025-06-04 06:16:33,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 02:16:43] 2025-06-04 06:16:33,446 | INFO     | all data control threads have been joined
[2025-06-04 02:16:43] 2025-06-04 06:16:33,696 | INFO     | all payload control threads have been joined
[2025-06-04 02:16:43] 2025-06-04 06:16:34,435 | INFO     | [job] retrieve thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,437 | INFO     | [job] job monitor thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,451 | INFO     | [data] control thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,488 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 02:16:43] 2025-06-04 06:16:34,535 | INFO     | [job] validate thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,599 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,631 | INFO     | [payload] validate_post thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,656 | INFO     | [payload] failed_post thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,701 | INFO     | [payload] control thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,767 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,777 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:34,904 | INFO     | all job control threads have been joined
[2025-06-04 02:16:43] 2025-06-04 06:16:35,206 | INFO     | [data] copytool_in thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:35,555 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:35,909 | INFO     | [job] control thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:35,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:16:43] 2025-06-04 06:16:36,494 | INFO     | [data] copytool_out thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:36,965 | INFO     | [job] queue monitor thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:37,437 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 02:16:43] 2025-06-04 06:16:38,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139916379682624)>', '<ExcThread(monitor, started 139915673204480)>']
[2025-06-04 02:16:43] 2025-06-04 06:16:39,462 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 02:16:43] 2025-06-04 06:16:39,462 | INFO     | [monitor] control thread has ended
[2025-06-04 02:16:43] 2025-06-04 06:16:43,697 | INFO     | all workflow threads have been joined
[2025-06-04 02:16:43] 2025-06-04 06:16:43,697 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 02:16:43] 2025-06-04 06:16:43,697 | INFO     | traces error code: 0
[2025-06-04 02:16:43] 2025-06-04 06:16:43,698 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 02:16:43] 2025-06-04 06:16:43,834 [wrapper] ==== pilot stdout END ====
[2025-06-04 02:16:43] 2025-06-04 06:16:43,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 02:16:43] 2025-06-04 06:16:43,840 [wrapper] pilotpid: 4186465
[2025-06-04 02:16:43] 2025-06-04 06:16:43,843 [wrapper] Pilot exit status: 0
[2025-06-04 02:16:43] 2025-06-04 06:16:43,853 [wrapper] pandaids: 6678156228
[2025-06-04 02:16:43] 2025-06-04 06:16:43,900 [wrapper] cleanup supervisor_pilot  102765 4186466
[2025-06-04 02:16:43] 2025-06-04 06:16:43,903 [wrapper] Test setup, not cleaning
[2025-06-04 02:16:43] 2025-06-04 06:16:43,906 [wrapper] apfmon messages muted
[2025-06-04 02:16:43] 2025-06-04 06:16:43,909 [wrapper] ==== wrapper stdout END ====
[2025-06-04 02:16:43] 2025-06-04 06:16:43,912 [wrapper] ==== wrapper stderr END ====
[2025-06-04 02:16:43]  *** Error codes and diagnostics ***
[2025-06-04 02:16:43]     "exeErrorCode": 0,
[2025-06-04 02:16:43]     "exeErrorDiag": "",
[2025-06-04 02:16:43]     "pilotErrorCode": 0,
[2025-06-04 02:16:43]     "pilotErrorDiag": "",
[2025-06-04 02:16:43]  *** Listing of results directory ***
[2025-06-04 02:16:43] total 387000
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:42 pilot3.tar.gz
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 19:43 queuedata.json
[2025-06-04 02:16:43] -rwx------. 1 boincer umatlas     37140 Jun  3 19:43 runpilot2-wrapper.sh
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas       100 Jun  4 01:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 02:16:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 01:23 run_atlas
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas       105 Jun  4 01:23 job.xml
[2025-06-04 02:16:43] -rw-r--r--. 2 boincer umatlas 213303256 Jun  4 01:23 EVNT.45006593._001936.pool.root.1
[2025-06-04 02:16:43] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 01:23 start_atlas.sh
[2025-06-04 02:16:43] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 01:23 shared
[2025-06-04 02:16:43] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 01:23 input.tar.gz
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas         0 Jun  4 01:23 boinc_lockfile
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 01:23 pandaJob.out
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas    986745 Jun  4 01:23 agis_schedconf.cvmfs.json
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas   1603667 Jun  4 01:23 agis_ddmendpoints.agis.ALL.json
[2025-06-04 02:16:43] drwx------. 4 boincer umatlas      4096 Jun  4 01:24 pilot3
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas      6842 Jun  4 02:13 init_data.xml
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas        95 Jun  4 02:15 pilot_heartbeat.json
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas 177806228 Jun  4 02:15 HITS.45006595._048215.pool.root.1
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas       529 Jun  4 02:16 boinc_task_state.xml
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas      1036 Jun  4 02:16 memory_monitor_summary.json
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas    341810 Jun  4 02:16 log.45006595._048215.job.log.tgz.1
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 02:16 boinc_mmap_file
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas        27 Jun  4 02:16 wrapper_checkpoint.txt
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas      7715 Jun  4 02:16 heartbeat.json
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas      4873 Jun  4 02:16 pilotlog.txt
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas    330921 Jun  4 02:16 log.45006595._048215.job.log.1
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas       357 Jun  4 02:16 output.list
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas       620 Jun  4 02:16 runtime_log
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas    696320 Jun  4 02:16 result.tar.gz
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas      8666 Jun  4 02:16 runtime_log.err
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas       652 Jun  4 02:16 8xPLDmTTqg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCXmKDmA6wY4m.diag
[2025-06-04 02:16:43] -rw-r--r--. 1 boincer umatlas     21470 Jun  4 02:16 stderr.txt
[2025-06-04 02:16:43] HITS file was successfully produced:
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas 177806228 Jun  4 02:15 shared/HITS.pool.root.1
[2025-06-04 02:16:43]  *** Contents of shared directory: ***
[2025-06-04 02:16:43] total 383144
[2025-06-04 02:16:43] -rw-r--r--. 2 boincer umatlas 213303256 Jun  4 01:23 ATLAS.root_0
[2025-06-04 02:16:43] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 01:23 start_atlas.sh
[2025-06-04 02:16:43] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 01:23 input.tar.gz
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas 177806228 Jun  4 02:15 HITS.pool.root.1
[2025-06-04 02:16:43] -rw-------. 1 boincer umatlas    696320 Jun  4 02:16 result.tar.gz
02:16:45 (4182834): run_atlas exited; CPU time 29417.629295
02:16:45 (4182834): called boinc_finish(0)

</stderr_txt>
]]>

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