Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:13:33 (31065): wrapper (7.7.26015): starting
17:13:33 (31065): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 17:13:33] Arguments: --nthreads 8
[2025-06-04 17:13:33] Threads: 8
[2025-06-04 17:13:33] Checking for CVMFS
[2025-06-04 17:13:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:13:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:13:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:13:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:13:35] 2.11.2.0 28532 33469 88656 146783 0 159 24645191 25165825 4019 130560 0 17878968 99.766 20502992 2506 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 17:13:35] CVMFS is ok
[2025-06-04 17:13:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:13:35] Checking for apptainer binary...
[2025-06-04 17:13:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:13:35] Running /usr/bin/apptainer --version
[2025-06-04 17:13:36] apptainer version 1.3.2-1.el7
[2025-06-04 17:13:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:13:37] cg-vwn472.simple-grid.lan
[2025-06-04 17:13:37] apptainer works
[2025-06-04 17:13:37] Set ATHENA_PROC_NUMBER=8
[2025-06-04 17:13:37] Set ATHENA_CORE_NUMBER=8
[2025-06-04 17:13:37] Starting ATLAS job with PandaID=6678156075
[2025-06-04 17:13:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:01:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:01:24] 2025-06-04 18:40:27,218 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:01:24] 2025-06-04 18:40:27,218 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:01:24] 2025-06-04 18:40:27,222 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:01:24] 2025-06-04 18:40:27,223 | INFO     | sum of square deviations: 2518000700.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,224 | INFO     | sum of deviations: 22732332468.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,224 | INFO     | mean x: 1749056191.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,225 | INFO     | mean y: 2457245.268656716
[2025-06-04 21:01:24] 2025-06-04 18:40:27,225 | INFO     | -- intersect: -15787898507.62121
[2025-06-04 21:01:24] 2025-06-04 18:40:27,225 | INFO     | intersect: -15787898507.62121
[2025-06-04 21:01:24] 2025-06-04 18:40:27,227 | INFO     | chi2: 2.2095384857238143
[2025-06-04 21:01:24] 2025-06-04 18:40:27,228 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,229 | INFO     | sum of deviations: 35163083450.99999
[2025-06-04 21:01:24] 2025-06-04 18:40:27,230 | INFO     | mean x: 1749056038.5
[2025-06-04 21:01:24] 2025-06-04 18:40:27,230 | INFO     | mean y: 2467366.663265306
[2025-06-04 21:01:24] 2025-06-04 18:40:27,230 | INFO     | -- intersect: -26339932791.86645
[2025-06-04 21:01:24] 2025-06-04 18:40:27,230 | INFO     | intersect: -26339932791.86645
[2025-06-04 21:01:24] 2025-06-04 18:40:27,230 | INFO     | chi2: 1.4379060098213094
[2025-06-04 21:01:24] 2025-06-04 18:40:27,230 | INFO     | current chi2=1.4379060098213094 (change=34.922789572942364 %)
[2025-06-04 21:01:24] 2025-06-04 18:40:27,231 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,232 | INFO     | sum of deviations: 34158091309.999996
[2025-06-04 21:01:24] 2025-06-04 18:40:27,232 | INFO     | mean x: 1749055886.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,232 | INFO     | mean y: 2466486.4869109946
[2025-06-04 21:01:24] 2025-06-04 18:40:27,232 | INFO     | -- intersect: -27649795353.51008
[2025-06-04 21:01:24] 2025-06-04 18:40:27,232 | INFO     | intersect: -27649795353.51008
[2025-06-04 21:01:24] 2025-06-04 18:40:27,233 | INFO     | chi2: 1.438431271722948
[2025-06-04 21:01:24] 2025-06-04 18:40:27,233 | INFO     | current chi2=1.438431271722948 (change=-0.0365296408840909 %)
[2025-06-04 21:01:24] 2025-06-04 18:40:27,233 | INFO     | right removable region: 190
[2025-06-04 21:01:24] 2025-06-04 18:40:27,233 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,235 | INFO     | sum of deviations: -6861027338.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,235 | INFO     | mean x: 1749056343.5
[2025-06-04 21:01:24] 2025-06-04 18:40:27,235 | INFO     | mean y: 2481581.7448979593
[2025-06-04 21:01:24] 2025-06-04 18:40:27,235 | INFO     | -- intersect: 5142416462.733232
[2025-06-04 21:01:24] 2025-06-04 18:40:27,235 | INFO     | intersect: 5142416462.733232
[2025-06-04 21:01:24] 2025-06-04 18:40:27,235 | INFO     | chi2: 0.811102878227522
[2025-06-04 21:01:24] 2025-06-04 18:40:27,236 | INFO     | current chi2=0.811102878227522 (change=63.29084632523085 %)
[2025-06-04 21:01:24] 2025-06-04 18:40:27,236 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,237 | INFO     | sum of deviations: -5290370119.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,237 | INFO     | mean x: 1749056496.0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,237 | INFO     | mean y: 2480219.4397905758
[2025-06-04 21:01:24] 2025-06-04 18:40:27,237 | INFO     | -- intersect: 4285235641.9753532
[2025-06-04 21:01:24] 2025-06-04 18:40:27,238 | INFO     | intersect: 4285235641.9753532
[2025-06-04 21:01:24] 2025-06-04 18:40:27,238 | INFO     | chi2: 0.7937862542993084
[2025-06-04 21:01:24] 2025-06-04 18:40:27,238 | INFO     | current chi2=0.7937862542993084 (change=2.1349479077247424 %)
[2025-06-04 21:01:24] 2025-06-04 18:40:27,238 | INFO     | left removable region: 20
[2025-06-04 21:01:24] 2025-06-04 18:40:27,238 | INFO     | sum of square deviations: 1523386702.5
[2025-06-04 21:01:24] 2025-06-04 18:40:27,245 | INFO     | sum of deviations: 4956517759.499996
[2025-06-04 21:01:24] 2025-06-04 18:40:27,245 | INFO     | mean x: 1749056465.5
[2025-06-04 21:01:24] 2025-06-04 18:40:27,245 | INFO     | mean y: 2493230.1352941175
[2025-06-04 21:01:24] 2025-06-04 18:40:27,245 | INFO     | -- intersect: -5688267637.99631
[2025-06-04 21:01:24] 2025-06-04 18:40:27,245 | INFO     | intersect: -5688267637.99631
[2025-06-04 21:01:24] 2025-06-04 18:40:27,246 | INFO     | chi2: 0.001042605785209045
[2025-06-04 21:01:24] 2025-06-04 18:40:27,246 | INFO     | -- intersect: -5688267637.99631
[2025-06-04 21:01:24] 2025-06-04 18:40:27,246 | INFO     | current memory leak: 3.25 B/s (using 170 data points, chi2=0.00)
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | ..............................
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . Timing measurements:
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . get job = 0 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . initial setup = 2 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . payload setup = 13 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . stage-in = 0 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . payload execution = 12252 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . stage-out = 3 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | . log creation = 1 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,247 | INFO     | ..............................
[2025-06-04 21:01:24] 2025-06-04 18:40:27,711 | INFO     | 
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | job summary report
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | --------------------------------------------------
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | PanDA job id: 6678156075
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | task id: 45006595
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | errors: (none)
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | pilot state: finished 
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | transexitcode: 0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | exeerrorcode: 0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | exeerrordiag: 
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | exitcode: 0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,712 | INFO     | exitmsg: OK
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | cpuconsumptiontime: 46209 s
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | nevents: 400
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | neventsw: 0
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | pid: 10869
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | pgrp: 10869
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | corecount: 8
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | event service: False
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | sizes: {0: 2397342, 9: 2397548, 11: 2397576, 12270: 2426839, 12274: 2435780, 12275: 2435836, 12370: 2436134}
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | --------------------------------------------------
[2025-06-04 21:01:24] 2025-06-04 18:40:27,713 | INFO     | 
[2025-06-04 21:01:24] 2025-06-04 18:40:27,714 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 21:01:24] 2025-06-04 18:40:28,100 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,100 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,100 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,100 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,101 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:01:24] 2025-06-04 18:40:28,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,102 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:01:24] 2025-06-04 18:40:28,102 | INFO     | job 6678156075 has completed (purged errors)
[2025-06-04 21:01:24] 2025-06-04 18:40:28,102 | INFO     | overall cleanup function is called
[2025-06-04 21:01:24] 2025-06-04 18:40:29,109 | INFO     | --- collectZombieJob: --- 10, [10869]
[2025-06-04 21:01:24] 2025-06-04 18:40:29,110 | INFO     | zombie collector waiting for pid 10869
[2025-06-04 21:01:24] 2025-06-04 18:40:29,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:01:24] 2025-06-04 18:40:29,110 | INFO     | collected zombie processes
[2025-06-04 21:01:24] 2025-06-04 18:40:29,110 | INFO     | will attempt to kill all subprocesses of pid=10869
[2025-06-04 21:01:24] 2025-06-04 18:40:29,202 | INFO     | process IDs to be killed: [10869] (in reverse order)
[2025-06-04 21:01:24] 2025-06-04 18:40:29,946 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:01:24] 2025-06-04 18:40:29,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:01:24] 2025-06-04 18:40:29,954 | INFO     | did not find any defunct processes belonging to 10869
[2025-06-04 21:01:24] 2025-06-04 18:40:29,958 | INFO     | did not find any defunct processes belonging to 10869
[2025-06-04 21:01:24] 2025-06-04 18:40:29,958 | INFO     | ready for new job
[2025-06-04 21:01:24] 2025-06-04 18:40:29,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:01:24] 2025-06-04 18:40:29,960 | INFO     | **************************************
[2025-06-04 21:01:24] 2025-06-04 18:40:29,960 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:01:24] 2025-06-04 18:40:29,960 | INFO     | **************************************
[2025-06-04 21:01:24] 2025-06-04 18:40:29,960 | INFO     | 
[2025-06-04 21:01:24] 2025-06-04 18:40:29,961 | INFO     | pilot is running in a VM
[2025-06-04 21:01:24] 2025-06-04 18:40:29,961 | INFO     | architecture information:
[2025-06-04 21:01:24] 2025-06-04 18:40:29,962 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:01:24] 2025-06-04 18:40:30,199 | INFO     | cat /etc/os-release:
[2025-06-04 21:01:24] NAME="CentOS Linux"
[2025-06-04 21:01:24] VERSION="7 (Core)"
[2025-06-04 21:01:24] ID="centos"
[2025-06-04 21:01:24] ID_LIKE="rhel fedora"
[2025-06-04 21:01:24] VERSION_ID="7"
[2025-06-04 21:01:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:01:24] ANSI_COLOR="0;31"
[2025-06-04 21:01:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:01:24] HOME_URL="https://www.centos.org/"
[2025-06-04 21:01:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:01:24] 
[2025-06-04 21:01:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:01:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:01:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:01:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:01:24] 
[2025-06-04 21:01:24] 2025-06-04 18:40:30,199 | INFO     | **************************************
[2025-06-04 21:01:24] 2025-06-04 18:40:30,702 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 21:01:24] 2025-06-04 18:40:30,968 | INFO     | sufficient remaining disk space (496774414336 B)
[2025-06-04 21:01:24] 2025-06-04 18:40:30,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:01:24] 2025-06-04 18:40:30,969 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:01:24] 2025-06-04 18:40:30,969 | INFO     | update_server=False
[2025-06-04 21:01:24] 2025-06-04 18:40:30,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:01:24] 2025-06-04 18:40:30,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:01:24] 2025-06-04 18:40:31,309 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 21:01:24] 2025-06-04 18:40:31,310 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 21:01:24] 2025-06-04 18:40:31,310 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:01:24] 2025-06-04 18:40:31,310 | INFO     | will abort loop
[2025-06-04 21:01:24] 2025-06-04 18:40:31,365 | INFO     | all payload control threads have been joined
[2025-06-04 21:01:24] 2025-06-04 18:40:31,665 | INFO     | all job control threads have been joined
[2025-06-04 21:01:24] 2025-06-04 18:40:31,910 | INFO     | PID=2341 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 21:01:24] 2025-06-04 18:40:31,911 | INFO     | .. there are 9 such processes running
[2025-06-04 21:01:24] 2025-06-04 18:40:31,911 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:01:24] 2025-06-04 18:40:31,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:01:24] 2025-06-04 18:40:31,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:01:24] 2025-06-04 18:40:31,975 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,023 | INFO     | all data control threads have been joined
[2025-06-04 21:01:24] 2025-06-04 18:40:32,221 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,315 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,371 | INFO     | [payload] control thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:01:24] 2025-06-04 18:40:32,671 | INFO     | [job] control thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,697 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,900 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,959 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:32,977 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:33,029 | INFO     | [data] control thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:33,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:01:24] 2025-06-04 18:40:33,170 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:33,257 | INFO     | [job] validate thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:33,391 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:33,413 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:33,454 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:37,150 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:01:24] 2025-06-04 18:40:38,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140262858360640)>', '<ExcThread(monitor, started 140262282094336)>']
[2025-06-04 21:01:24] 2025-06-04 18:40:38,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:01:24] 2025-06-04 18:40:38,953 | INFO     | [monitor] control thread has ended
[2025-06-04 21:01:24] 2025-06-04 18:40:43,095 | INFO     | all workflow threads have been joined
[2025-06-04 21:01:24] 2025-06-04 18:40:43,095 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:01:24] 2025-06-04 18:40:43,096 | INFO     | traces error code: 0
[2025-06-04 21:01:24] 2025-06-04 18:40:43,096 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:01:24] 2025-06-04 18:40:43,411 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:01:24] 2025-06-04 18:40:43,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:01:24] 2025-06-04 18:40:43,501 [wrapper] pilotpid: 2341
[2025-06-04 21:01:24] 2025-06-04 18:40:43,570 [wrapper] Pilot exit status: 0
[2025-06-04 21:01:24] 2025-06-04 18:40:44,095 [wrapper] pandaids: 6678156075
[2025-06-04 21:01:24] 2025-06-04 18:40:45,006 [wrapper] cleanup supervisor_pilot 26542 2342
[2025-06-04 21:01:24] 2025-06-04 18:40:45,063 [wrapper] Test setup, not cleaning
[2025-06-04 21:01:24] 2025-06-04 18:40:45,167 [wrapper] apfmon messages muted
[2025-06-04 21:01:24] 2025-06-04 18:40:45,272 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:01:24] 2025-06-04 18:40:45,344 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:01:24]  *** Error codes and diagnostics ***
[2025-06-04 21:01:24]     "exeErrorCode": 0,
[2025-06-04 21:01:24]     "exeErrorDiag": "",
[2025-06-04 21:01:24]     "pilotErrorCode": 0,
[2025-06-04 21:01:24]     "pilotErrorDiag": "",
[2025-06-04 21:01:24]  *** Listing of results directory ***
[2025-06-04 21:01:24] total 387724
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:22 pilot3.tar.gz
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc      5111 Jun  4 01:34 queuedata.json
[2025-06-04 21:01:24] -rwx------. 1 boinc boinc     37140 Jun  4 01:35 runpilot2-wrapper.sh
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc       100 Jun  4 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:01:24] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 17:13 run_atlas
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc       105 Jun  4 17:13 job.xml
[2025-06-04 21:01:24] -rw-r--r--. 2 boinc boinc 214088532 Jun  4 17:13 EVNT.45006593._001930.pool.root.1
[2025-06-04 21:01:24] -rw-r--r--. 2 boinc boinc    508882 Jun  4 17:13 input.tar.gz
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc      6392 Jun  4 17:13 init_data.xml
[2025-06-04 21:01:24] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:13 start_atlas.sh
[2025-06-04 21:01:24] drwxrwx--x. 2 boinc boinc        68 Jun  4 17:13 shared
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc         0 Jun  4 17:13 boinc_lockfile
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc      2525 Jun  4 17:13 pandaJob.out
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc    987207 Jun  4 17:13 agis_schedconf.cvmfs.json
[2025-06-04 21:01:24] drwx------. 4 boinc boinc      4096 Jun  4 17:13 pilot3
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc 176230235 Jun  4 20:37 HITS.45006595._048062.pool.root.1
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc       530 Jun  4 20:37 boinc_task_state.xml
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc      1018 Jun  4 20:38 memory_monitor_summary.json
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc   1598969 Jun  4 20:38 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc    361890 Jun  4 20:38 log.45006595._048062.job.log.tgz.1
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc        95 Jun  4 20:39 pilot_heartbeat.json
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc      7693 Jun  4 20:40 heartbeat.json
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc      4993 Jun  4 20:40 pilotlog.txt
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc   1084729 Jun  4 20:40 log.45006595._048062.job.log.1
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc       357 Jun  4 20:40 output.list
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc       620 Jun  4 20:40 runtime_log
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc   1464320 Jun  4 20:40 result.tar.gz
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc      8659 Jun  4 20:40 runtime_log.err
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc       657 Jun  4 20:40 bw5NDmULqg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRGaKDmRMxZYm.diag
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc      8192 Jun  4 21:01 boinc_mmap_file
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc        28 Jun  4 21:01 wrapper_checkpoint.txt
[2025-06-04 21:01:24] -rw-r--r--. 1 boinc boinc     20547 Jun  4 21:01 stderr.txt
[2025-06-04 21:01:24] HITS file was successfully produced:
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc 176230235 Jun  4 20:37 shared/HITS.pool.root.1
[2025-06-04 21:01:24]  *** Contents of shared directory: ***
[2025-06-04 21:01:24] total 383120
[2025-06-04 21:01:24] -rw-r--r--. 2 boinc boinc 214088532 Jun  4 17:13 ATLAS.root_0
[2025-06-04 21:01:24] -rw-r--r--. 2 boinc boinc    508882 Jun  4 17:13 input.tar.gz
[2025-06-04 21:01:24] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:13 start_atlas.sh
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc 176230235 Jun  4 20:37 HITS.pool.root.1
[2025-06-04 21:01:24] -rw-------. 1 boinc boinc   1464320 Jun  4 20:40 result.tar.gz
21:01:26 (31065): run_atlas exited; CPU time 46359.505713
21:01:26 (31065): called boinc_finish(0)

</stderr_txt>
]]>

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