Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:49:54 (1709): wrapper (7.7.26015): starting
14:49:54 (1709): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 14:49:54] Arguments: --nthreads 8
[2025-06-04 14:49:54] Threads: 8
[2025-06-04 14:49:54] Checking for CVMFS
[2025-06-04 14:49:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:49:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:49:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:49:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:49:56] 2.11.2.0 20313 33411 93544 146780 0 62 24758623 25165825 3136 130560 0 17742356 99.786 20431191 5175 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 14:49:56] CVMFS is ok
[2025-06-04 14:49:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:49:56] Checking for apptainer binary...
[2025-06-04 14:49:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:49:56] Running /usr/bin/apptainer --version
[2025-06-04 14:49:56] apptainer version 1.3.2-1.el7
[2025-06-04 14:49:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:50:04] cg-vwn236.simple-grid.lan
[2025-06-04 14:50:04] apptainer works
[2025-06-04 14:50:04] Set ATHENA_PROC_NUMBER=8
[2025-06-04 14:50:04] Set ATHENA_CORE_NUMBER=8
[2025-06-04 14:50:05] Starting ATLAS job with PandaID=6667365354
[2025-06-04 14:50:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:26:33]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:26:33] 2025-06-04 18:23:59,298 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:26:33] 2025-06-04 18:23:59,304 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:26:33] 2025-06-04 18:23:59,305 | INFO     | sum of square deviations: 9784425315.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,308 | INFO     | sum of deviations: 102753500149.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,308 | INFO     | mean x: 1749051696.5
[2025-06-04 20:26:33] 2025-06-04 18:23:59,308 | INFO     | mean y: 2462137.9620253164
[2025-06-04 20:26:33] 2025-06-04 18:23:59,309 | INFO     | -- intersect: -18365625712.98208
[2025-06-04 20:26:33] 2025-06-04 18:23:59,309 | INFO     | intersect: -18365625712.98208
[2025-06-04 20:26:33] 2025-06-04 18:23:59,309 | INFO     | chi2: 5.51350621287099
[2025-06-04 20:26:33] 2025-06-04 18:23:59,310 | INFO     | sum of square deviations: 9327281860.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,313 | INFO     | sum of deviations: 122083249261.99997
[2025-06-04 20:26:33] 2025-06-04 18:23:59,313 | INFO     | mean x: 1749051544.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,313 | INFO     | mean y: 2468496.4694533763
[2025-06-04 20:26:33] 2025-06-04 18:23:59,313 | INFO     | -- intersect: -22890577818.980686
[2025-06-04 20:26:33] 2025-06-04 18:23:59,313 | INFO     | intersect: -22890577818.980686
[2025-06-04 20:26:33] 2025-06-04 18:23:59,314 | INFO     | chi2: 4.769737894914401
[2025-06-04 20:26:33] 2025-06-04 18:23:59,314 | INFO     | current chi2=4.769737894914401 (change=13.4899334332897 %)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,314 | INFO     | right removable region: 310
[2025-06-04 20:26:33] 2025-06-04 18:23:59,315 | INFO     | sum of square deviations: 9327281860.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,318 | INFO     | sum of deviations: -651030491.0000038
[2025-06-04 20:26:33] 2025-06-04 18:23:59,319 | INFO     | mean x: 1749051849.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,319 | INFO     | mean y: 2496593.2797427652
[2025-06-04 20:26:33] 2025-06-04 18:23:59,319 | INFO     | -- intersect: 124577827.78410397
[2025-06-04 20:26:33] 2025-06-04 18:23:59,319 | INFO     | intersect: 124577827.78410397
[2025-06-04 20:26:33] 2025-06-04 18:23:59,319 | INFO     | chi2: 1.4268439489058937
[2025-06-04 20:26:33] 2025-06-04 18:23:59,320 | INFO     | current chi2=1.4268439489058937 (change=74.12093332596594 %)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,320 | INFO     | sum of square deviations: 8884603792.5
[2025-06-04 20:26:33] 2025-06-04 18:23:59,323 | INFO     | sum of deviations: -30933621244.999992
[2025-06-04 20:26:33] 2025-06-04 18:23:59,323 | INFO     | mean x: 1749052001.5
[2025-06-04 20:26:33] 2025-06-04 18:23:59,323 | INFO     | mean y: 2506954.209150327
[2025-06-04 20:26:33] 2025-06-04 18:23:59,324 | INFO     | -- intersect: 6092200250.142376
[2025-06-04 20:26:33] 2025-06-04 18:23:59,324 | INFO     | intersect: 6092200250.142376
[2025-06-04 20:26:33] 2025-06-04 18:23:59,324 | INFO     | chi2: 0.8824433751679417
[2025-06-04 20:26:33] 2025-06-04 18:23:59,324 | INFO     | current chi2=0.8824433751679417 (change=38.15417755777703 %)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,325 | INFO     | sum of square deviations: 8456158550.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,328 | INFO     | sum of deviations: -29966333936.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,328 | INFO     | mean x: 1749052154.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,328 | INFO     | mean y: 2506592.0166112958
[2025-06-04 20:26:33] 2025-06-04 18:23:59,328 | INFO     | -- intersect: 6200673361.04486
[2025-06-04 20:26:33] 2025-06-04 18:23:59,328 | INFO     | intersect: 6200673361.04486
[2025-06-04 20:26:33] 2025-06-04 18:23:59,329 | INFO     | chi2: 0.8688313679699071
[2025-06-04 20:26:33] 2025-06-04 18:23:59,329 | INFO     | current chi2=0.8688313679699071 (change=1.542536051726153 %)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,329 | INFO     | left removable region: 30
[2025-06-04 20:26:33] 2025-06-04 18:23:59,330 | INFO     | sum of square deviations: 6806862510.0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,332 | INFO     | sum of deviations: 8227011836.5
[2025-06-04 20:26:33] 2025-06-04 18:23:59,333 | INFO     | mean x: 1749052428.5
[2025-06-04 20:26:33] 2025-06-04 18:23:59,333 | INFO     | mean y: 2507168.839285714
[2025-06-04 20:26:33] 2025-06-04 18:23:59,333 | INFO     | -- intersect: -2111458701.7492435
[2025-06-04 20:26:33] 2025-06-04 18:23:59,333 | INFO     | intersect: -2111458701.7492435
[2025-06-04 20:26:33] 2025-06-04 18:23:59,333 | INFO     | chi2: 0.0010285300372810506
[2025-06-04 20:26:33] 2025-06-04 18:23:59,333 | INFO     | -- intersect: -2111458701.7492435
[2025-06-04 20:26:33] 2025-06-04 18:23:59,334 | INFO     | current memory leak: 1.21 B/s (using 280 data points, chi2=0.00)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | ..............................
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . Timing measurements:
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . get job = 0 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . initial setup = 5 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . payload setup = 151 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . stage-in = 0 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . payload execution = 19407 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . stage-out = 3 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | . log creation = 1 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,335 | INFO     | ..............................
[2025-06-04 20:26:33] 2025-06-04 18:23:59,485 | INFO     | 
[2025-06-04 20:26:33] 2025-06-04 18:23:59,485 | INFO     | job summary report
[2025-06-04 20:26:33] 2025-06-04 18:23:59,485 | INFO     | --------------------------------------------------
[2025-06-04 20:26:33] 2025-06-04 18:23:59,485 | INFO     | PanDA job id: 6667365354
[2025-06-04 20:26:33] 2025-06-04 18:23:59,485 | INFO     | task id: 44871837
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | errors: (none)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | pilot state: finished 
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | transexitcode: 0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | exeerrorcode: 0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | exeerrordiag: 
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | exitcode: 0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | exitmsg: OK
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | cpuconsumptiontime: 73631 s
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | nevents: 400
[2025-06-04 20:26:33] 2025-06-04 18:23:59,486 | INFO     | neventsw: 0
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | pid: 14781
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | pgrp: 14781
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | corecount: 8
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | event service: False
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | sizes: {0: 2397166, 1: 2397421, 2: 2397421, 12: 2397449, 23: 2397477, 34: 2397505, 45: 2397661, 55: 2397689, 66: 2397717, 77: 2397745, 86: 2398007, 88: 2398315, 19
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | --------------------------------------------------
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | 
[2025-06-04 20:26:33] 2025-06-04 18:23:59,487 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-06-04 20:26:33] 2025-06-04 18:23:59,782 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:26:33] 2025-06-04 18:23:59,784 | INFO     | job 6667365354 has completed (purged errors)
[2025-06-04 20:26:33] 2025-06-04 18:23:59,785 | INFO     | overall cleanup function is called
[2025-06-04 20:26:33] 2025-06-04 18:24:00,503 | INFO     | PID=6187 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 20:26:33] 2025-06-04 18:24:00,503 | INFO     | .. there are 9 such processes running
[2025-06-04 20:26:33] 2025-06-04 18:24:00,794 | INFO     | --- collectZombieJob: --- 10, [14781]
[2025-06-04 20:26:33] 2025-06-04 18:24:00,794 | INFO     | zombie collector waiting for pid 14781
[2025-06-04 20:26:33] 2025-06-04 18:24:00,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:26:33] 2025-06-04 18:24:00,794 | INFO     | collected zombie processes
[2025-06-04 20:26:33] 2025-06-04 18:24:00,794 | INFO     | will attempt to kill all subprocesses of pid=14781
[2025-06-04 20:26:33] 2025-06-04 18:24:00,912 | INFO     | process IDs to be killed: [14781] (in reverse order)
[2025-06-04 20:26:33] 2025-06-04 18:24:01,785 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:26:33] 2025-06-04 18:24:01,786 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:26:33] 2025-06-04 18:24:01,789 | INFO     | did not find any defunct processes belonging to 14781
[2025-06-04 20:26:33] 2025-06-04 18:24:01,793 | INFO     | did not find any defunct processes belonging to 14781
[2025-06-04 20:26:33] 2025-06-04 18:24:01,793 | INFO     | ready for new job
[2025-06-04 20:26:33] 2025-06-04 18:24:01,793 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:26:33] 2025-06-04 18:24:01,795 | INFO     | **************************************
[2025-06-04 20:26:33] 2025-06-04 18:24:01,795 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:26:33] 2025-06-04 18:24:01,796 | INFO     | **************************************
[2025-06-04 20:26:33] 2025-06-04 18:24:01,796 | INFO     | 
[2025-06-04 20:26:33] 2025-06-04 18:24:01,796 | INFO     | pilot is running in a VM
[2025-06-04 20:26:33] 2025-06-04 18:24:01,796 | INFO     | architecture information:
[2025-06-04 20:26:33] 2025-06-04 18:24:01,813 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:26:33] 2025-06-04 18:24:02,075 | INFO     | cat /etc/os-release:
[2025-06-04 20:26:33] NAME="CentOS Linux"
[2025-06-04 20:26:33] VERSION="7 (Core)"
[2025-06-04 20:26:33] ID="centos"
[2025-06-04 20:26:33] ID_LIKE="rhel fedora"
[2025-06-04 20:26:33] VERSION_ID="7"
[2025-06-04 20:26:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:26:33] ANSI_COLOR="0;31"
[2025-06-04 20:26:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:26:33] HOME_URL="https://www.centos.org/"
[2025-06-04 20:26:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:26:33] 
[2025-06-04 20:26:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:26:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:26:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:26:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:26:33] 
[2025-06-04 20:26:33] 2025-06-04 18:24:02,076 | INFO     | **************************************
[2025-06-04 20:26:33] 2025-06-04 18:24:02,579 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-06-04 20:26:33] 2025-06-04 18:24:02,874 | INFO     | sufficient remaining disk space (497010343936 B)
[2025-06-04 20:26:33] 2025-06-04 18:24:02,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:26:33] 2025-06-04 18:24:02,875 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:26:33] 2025-06-04 18:24:02,875 | INFO     | update_server=False
[2025-06-04 20:26:33] 2025-06-04 18:24:02,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:26:33] 2025-06-04 18:24:02,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:26:33] 2025-06-04 18:24:02,875 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 20:26:33] 2025-06-04 18:24:02,876 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:26:33] 2025-06-04 18:24:02,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:26:33] 2025-06-04 18:24:02,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:26:33] 2025-06-04 18:24:02,882 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:26:33] 2025-06-04 18:24:03,202 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 20:26:33] 2025-06-04 18:24:03,202 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 20:26:33] 2025-06-04 18:24:03,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:26:33] 2025-06-04 18:24:03,203 | INFO     | will abort loop
[2025-06-04 20:26:33] 2025-06-04 18:24:03,333 | INFO     | all job control threads have been joined
[2025-06-04 20:26:33] 2025-06-04 18:24:03,352 | INFO     | all payload control threads have been joined
[2025-06-04 20:26:33] 2025-06-04 18:24:03,734 | INFO     | all data control threads have been joined
[2025-06-04 20:26:33] 2025-06-04 18:24:03,881 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:03,918 | INFO     | [job] validate thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,209 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,272 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,339 | INFO     | [job] control thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,357 | INFO     | [payload] control thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,361 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,415 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:26:33] 2025-06-04 18:24:04,523 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,547 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,737 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,740 | INFO     | [data] control thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:04,882 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:05,308 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:05,507 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:06,891 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:26:33] 2025-06-04 18:24:07,679 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139770303719232)>', '<ExcThread(monitor, started 139769577207552)>']
[2025-06-04 20:26:33] 2025-06-04 18:24:07,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:26:33] 2025-06-04 18:24:07,905 | INFO     | [monitor] control thread has ended
[2025-06-04 20:26:33] 2025-06-04 18:24:12,704 | INFO     | all workflow threads have been joined
[2025-06-04 20:26:33] 2025-06-04 18:24:12,704 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:26:33] 2025-06-04 18:24:12,705 | INFO     | traces error code: 0
[2025-06-04 20:26:33] 2025-06-04 18:24:12,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:26:33] 2025-06-04 18:24:13,050 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:26:33] 2025-06-04 18:24:13,155 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:26:33] 2025-06-04 18:24:13,236 [wrapper] pilotpid: 6187
[2025-06-04 20:26:33] 2025-06-04 18:24:13,324 [wrapper] Pilot exit status: 0
[2025-06-04 20:26:33] 2025-06-04 18:24:13,740 [wrapper] pandaids: 6667365354
[2025-06-04 20:26:33] 2025-06-04 18:24:14,645 [wrapper] cleanup supervisor_pilot 24682 6188
[2025-06-04 20:26:33] 2025-06-04 18:24:14,690 [wrapper] Test setup, not cleaning
[2025-06-04 20:26:33] 2025-06-04 18:24:14,741 [wrapper] apfmon messages muted
[2025-06-04 20:26:33] 2025-06-04 18:24:14,781 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:26:33] 2025-06-04 18:24:14,881 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:26:33]  *** Error codes and diagnostics ***
[2025-06-04 20:26:33]     "exeErrorCode": 0,
[2025-06-04 20:26:33]     "exeErrorDiag": "",
[2025-06-04 20:26:33]     "pilotErrorCode": 0,
[2025-06-04 20:26:33]     "pilotErrorDiag": "",
[2025-06-04 20:26:33]  *** Listing of results directory ***
[2025-06-04 20:26:33] total 420684
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc    495897 May 27 18:39 pilot3.tar.gz
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc      5111 May 27 19:20 queuedata.json
[2025-06-04 20:26:33] -rwx------. 1 boinc boinc     37140 May 27 19:23 runpilot2-wrapper.sh
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc       100 Jun  4 14:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:26:33] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 14:49 run_atlas
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc       105 Jun  4 14:49 job.xml
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc      6392 Jun  4 14:49 init_data.xml
[2025-06-04 20:26:33] -rw-r--r--. 2 boinc boinc 223839488 Jun  4 14:49 EVNT.44871834._002786.pool.root.1
[2025-06-04 20:26:33] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:49 start_atlas.sh
[2025-06-04 20:26:33] drwxrwx--x. 2 boinc boinc        68 Jun  4 14:49 shared
[2025-06-04 20:26:33] -rw-r--r--. 2 boinc boinc    508878 Jun  4 14:49 input.tar.gz
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc         0 Jun  4 14:49 boinc_lockfile
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc      2559 Jun  4 14:50 pandaJob.out
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc    986811 Jun  4 14:53 agis_schedconf.cvmfs.json
[2025-06-04 20:26:33] drwx------. 4 boinc boinc      4096 Jun  4 14:53 pilot3
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc 198891134 Jun  4 20:21 HITS.44871837._070938.pool.root.1
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc       531 Jun  4 20:21 boinc_task_state.xml
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc      1014 Jun  4 20:22 memory_monitor_summary.json
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc   1598969 Jun  4 20:22 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc    443987 Jun  4 20:22 log.44871837._070938.job.log.tgz.1
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc        95 Jun  4 20:23 pilot_heartbeat.json
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc      7686 Jun  4 20:23 heartbeat.json
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc      4726 Jun  4 20:24 pilotlog.txt
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc   1671513 Jun  4 20:24 log.44871837._070938.job.log.1
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc       357 Jun  4 20:24 output.list
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc       620 Jun  4 20:24 runtime_log
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc   2129920 Jun  4 20:24 result.tar.gz
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc      8673 Jun  4 20:24 runtime_log.err
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc       657 Jun  4 20:24 4y6NDmWCDe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbyZKDmtHZEQm.diag
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc      8192 Jun  4 20:26 boinc_mmap_file
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc        28 Jun  4 20:26 wrapper_checkpoint.txt
[2025-06-04 20:26:33] -rw-r--r--. 1 boinc boinc     20651 Jun  4 20:26 stderr.txt
[2025-06-04 20:26:33] HITS file was successfully produced:
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc 198891134 Jun  4 20:21 shared/HITS.pool.root.1
[2025-06-04 20:26:33]  *** Contents of shared directory: ***
[2025-06-04 20:26:33] total 415424
[2025-06-04 20:26:33] -rw-r--r--. 2 boinc boinc 223839488 Jun  4 14:49 ATLAS.root_0
[2025-06-04 20:26:33] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:49 start_atlas.sh
[2025-06-04 20:26:33] -rw-r--r--. 2 boinc boinc    508878 Jun  4 14:49 input.tar.gz
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc 198891134 Jun  4 20:21 HITS.pool.root.1
[2025-06-04 20:26:33] -rw-------. 1 boinc boinc   2129920 Jun  4 20:24 result.tar.gz
20:26:35 (1709): run_atlas exited; CPU time 73920.469523
20:26:35 (1709): called boinc_finish(0)

</stderr_txt>
]]>

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