Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:43:30 (3565489): wrapper (7.7.26015): starting
12:43:30 (3565489): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 12:43:30] Arguments: --nthreads 4
[2025-06-06 12:43:30] Threads: 4
[2025-06-06 12:43:30] Checking for CVMFS
[2025-06-06 12:43:30] No cvmfs_config command found, will try listing directly
[2025-06-06 12:43:30] CVMFS is ok
[2025-06-06 12:43:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 12:43:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 12:43:30] Further information can be found at the LHC@home message board.
[2025-06-06 12:43:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 12:43:30] Checking for apptainer binary...
[2025-06-06 12:43:30] which: no apptainer in ((null))
[2025-06-06 12:43:30] apptainer is not installed, using version from CVMFS
[2025-06-06 12:43:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 12:43:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-06-06 12:43:30] apptainer works
[2025-06-06 12:43:30] Set ATHENA_PROC_NUMBER=4
[2025-06-06 12:43:30] Set ATHENA_CORE_NUMBER=4
[2025-06-06 12:43:30] Starting ATLAS job with PandaID=6678155315
[2025-06-06 12:43:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 14:06:33]  *** The last 200 lines of the pilot log: ***
[2025-06-06 14:06:33]  lfn=log.45006595._047983.job.log.tgz.1
[2025-06-06 14:06:33]  mtime=0
[2025-06-06 14:06:33]  protocol_id=None
[2025-06-06 14:06:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-06 14:06:33]  replicas=None
[2025-06-06 14:06:33]  scope=mc23_13p6TeV
[2025-06-06 14:06:33]  status=None
[2025-06-06 14:06:33]  status_code=0
[2025-06-06 14:06:33]  storage_token=
[2025-06-06 14:06:33]  surl=/scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6678155315/log.45006595._047983.job.log.tgz.1
[2025-06-06 14:06:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/b7/log.45006595._047983.job.log.tgz.1
[2025-06-06 14:06:33]  workdir=None
[2025-06-06 14:06:33] ]
[2025-06-06 14:06:33] 2025-06-06 12:05:11,615 | INFO     | transferring file log.45006595._047983.job.log.tgz.1 from /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6678155315/log.45006595._047983.job.log.tgz.1 to /scratch/b
[2025-06-06 14:06:33] 2025-06-06 12:05:11,615 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6678155315/log.45006595._047983.job.log.tgz.1 /scratch/boinc/var/slot64/slots/0/lo
[2025-06-06 14:06:33] 2025-06-06 12:05:11,632 | INFO     | adding to output.list: log.45006595._047983.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/b7/log.45006595._047983.job.log.tg
[2025-06-06 14:06:33] 2025-06-06 12:05:11,632 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 14:06:33] 2025-06-06 12:05:11,632 | INFO     | summary of transferred files:
[2025-06-06 14:06:33] 2025-06-06 12:05:11,632 | INFO     |  -- lfn=log.45006595._047983.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 14:06:33] 2025-06-06 12:05:11,632 | INFO     | stage-out finished correctly
[2025-06-06 14:06:33] 2025-06-06 12:05:12,031 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 14:06:33] 2025-06-06 12:05:12,761 | INFO     | job 6678155315 has state=finished
[2025-06-06 14:06:33] 2025-06-06 12:05:12,761 | INFO     | preparing for final server update for job 6678155315 in state='finished'
[2025-06-06 14:06:33] 2025-06-06 12:05:12,761 | INFO     | this job has now completed (state=finished)
[2025-06-06 14:06:33] 2025-06-06 12:05:12,761 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 14:06:33] 2025-06-06 12:05:12,762 | INFO     | log transfer has been attempted: DONE
[2025-06-06 14:06:33] 2025-06-06 12:05:12,762 | INFO     | job 6678155315 has finished - writing final server update
[2025-06-06 14:06:33] 2025-06-06 12:05:12,762 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3338717/.job.ad'
[2025-06-06 14:06:33] 2025-06-06 12:05:12,762 | INFO     | total number of processed events: 400 (read)
[2025-06-06 14:06:33] 2025-06-06 12:05:12,763 | INFO     | executing command: lscpu
[2025-06-06 14:06:33] 2025-06-06 12:05:12,827 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 14:06:33] 2025-06-06 12:05:14,401 | WARNING  | process 3576824 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 14:06:33] 2025-06-06 12:05:14,402 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6678155315/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 14:06:33] 2025-06-06 12:05:14,733 | INFO     | number of running child processes to parent process 3576824: 1
[2025-06-06 14:06:33] 2025-06-06 12:05:14,733 | INFO     | maximum number of monitored processes: 6
[2025-06-06 14:06:33] 2025-06-06 12:05:16,848 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 14:06:33] 2025-06-06 12:05:16,864 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2787.366218750001
[2025-06-06 14:06:33] 2025-06-06 12:05:16,878 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6678155315/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 14:06:33] 2025-06-06 12:05:16,878 | INFO     | extracted standard info from prmon json
[2025-06-06 14:06:33] 2025-06-06 12:05:16,878 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 14:06:33] 2025-06-06 12:05:16,878 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 14:06:33] 2025-06-06 12:05:16,879 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 14:06:33] 2025-06-06 12:05:16,879 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | fitting pss+swap vs Time
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | sum of square deviations: 120605052.0
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | sum of deviations: -10814084758.0
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | mean x: 1749209147.0
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | mean y: 2426489.8630136987
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | -- intersect: 156845739945.14746
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | intersect: 156845739945.14746
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | chi2: 0.1277954227125305
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | -- intersect: 156845739945.14746
[2025-06-06 14:06:33] 2025-06-06 12:05:16,880 | INFO     | current memory leak: -89.67 B/s (using 73 data points, chi2=0.13)
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | could have reported an average CPU frequency of 2775 MHz (6 samples)
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | ..............................
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . Timing measurements:
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . get job = 0 s
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . initial setup = 1 s
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . payload setup = 6 s
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . stage-in = 0 s
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . payload execution = 4866 s
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . stage-out = 0 s
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | . log creation = 0 s
[2025-06-06 14:06:33] 2025-06-06 12:05:16,881 | INFO     | ..............................
[2025-06-06 14:06:33] 2025-06-06 12:05:17,079 | INFO     | 
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | job summary report
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | --------------------------------------------------
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | PanDA job id: 6678155315
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | task id: 45006595
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | errors: (none)
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | pilot state: finished 
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | transexitcode: 0
[2025-06-06 14:06:33] 2025-06-06 12:05:17,080 | INFO     | exeerrorcode: 0
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | exeerrordiag: 
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | exitcode: 0
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | exitmsg: OK
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | cpuconsumptiontime: 18644 s
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | nevents: 400
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | neventsw: 0
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | pid: 3576824
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | pgrp: 3576824
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | corecount: 4
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | event service: False
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | sizes: {0: 2397693, 5: 2397955, 11: 2398011, 4875: 2424358, 4876: 2424357, 4877: 2433560, 4882: 2433698}
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | --------------------------------------------------
[2025-06-06 14:06:33] 2025-06-06 12:05:17,081 | INFO     | 
[2025-06-06 14:06:33] 2025-06-06 12:05:17,082 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-06-06 14:06:33] 2025-06-06 12:05:17,105 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,105 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,105 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,105 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,105 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,105 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,106 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 14:06:33] 2025-06-06 12:05:17,107 | INFO     | job 6678155315 has completed (purged errors)
[2025-06-06 14:06:33] 2025-06-06 12:05:17,107 | INFO     | overall cleanup function is called
[2025-06-06 14:06:33] 2025-06-06 12:05:18,115 | INFO     | --- collectZombieJob: --- 10, [3576824]
[2025-06-06 14:06:33] 2025-06-06 12:05:18,115 | INFO     | zombie collector waiting for pid 3576824
[2025-06-06 14:06:33] 2025-06-06 12:05:18,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 14:06:33] 2025-06-06 12:05:18,116 | INFO     | collected zombie processes
[2025-06-06 14:06:33] 2025-06-06 12:05:18,116 | INFO     | will attempt to kill all subprocesses of pid=3576824
[2025-06-06 14:06:33] 2025-06-06 12:05:18,456 | INFO     | process IDs to be killed: [3576824] (in reverse order)
[2025-06-06 14:06:33] 2025-06-06 12:05:18,578 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 14:06:33] 2025-06-06 12:05:18,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 14:06:33] 2025-06-06 12:05:18,593 | INFO     | did not find any defunct processes belonging to 3576824
[2025-06-06 14:06:33] 2025-06-06 12:05:18,603 | INFO     | did not find any defunct processes belonging to 3576824
[2025-06-06 14:06:33] 2025-06-06 12:05:18,604 | INFO     | ready for new job
[2025-06-06 14:06:33] 2025-06-06 12:05:18,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 14:06:33] 2025-06-06 12:05:18,605 | INFO     | ***************************************
[2025-06-06 14:06:33] 2025-06-06 12:05:18,605 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-06 14:06:33] 2025-06-06 12:05:18,605 | INFO     | ***************************************
[2025-06-06 14:06:33] 2025-06-06 12:05:18,605 | INFO     | 
[2025-06-06 14:06:33] 2025-06-06 12:05:18,610 | INFO     | architecture information:
[2025-06-06 14:06:33] 2025-06-06 12:05:18,610 | INFO     | executing command: cat /etc/os-release
[2025-06-06 14:06:33] 2025-06-06 12:05:18,624 | INFO     | cat /etc/os-release:
[2025-06-06 14:06:33] NAME="CentOS Linux"
[2025-06-06 14:06:33] VERSION="7 (Core)"
[2025-06-06 14:06:33] ID="centos"
[2025-06-06 14:06:33] ID_LIKE="rhel fedora"
[2025-06-06 14:06:33] VERSION_ID="7"
[2025-06-06 14:06:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 14:06:33] ANSI_COLOR="0;31"
[2025-06-06 14:06:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 14:06:33] HOME_URL="https://www.centos.org/"
[2025-06-06 14:06:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 14:06:33] 
[2025-06-06 14:06:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 14:06:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 14:06:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 14:06:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 14:06:33] 
[2025-06-06 14:06:33] 2025-06-06 12:05:18,625 | INFO     | ***************************************
[2025-06-06 14:06:33] 2025-06-06 12:05:19,128 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-06-06 14:06:33] 2025-06-06 12:05:19,149 | INFO     | sufficient remaining disk space (3339035082752 B)
[2025-06-06 14:06:33] 2025-06-06 12:05:19,150 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 14:06:33] 2025-06-06 12:05:19,150 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 14:06:33] 2025-06-06 12:05:19,150 | INFO     | update_server=False
[2025-06-06 14:06:33] 2025-06-06 12:05:19,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 14:06:33] 2025-06-06 12:05:19,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 14:06:33] 2025-06-06 12:05:19,150 | INFO     | aborting loop
[2025-06-06 14:06:33] 2025-06-06 12:05:19,427 | INFO     | all data control threads have been joined
[2025-06-06 14:06:33] 2025-06-06 12:05:19,646 | INFO     | all job control threads have been joined
[2025-06-06 14:06:33] 2025-06-06 12:05:19,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 14:06:33] 2025-06-06 12:05:20,156 | INFO     | [job] retrieve thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:20,156 | INFO     | [job] job monitor thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:20,195 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:20,290 | INFO     | all payload control threads have been joined
[2025-06-06 14:06:33] 2025-06-06 12:05:20,432 | INFO     | [data] control thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:20,652 | INFO     | [job] control thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:20,781 | INFO     | [payload] failed_post thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:20,981 | INFO     | [data] copytool_in thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:20,995 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:21,029 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:21,063 | INFO     | [job] validate thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:21,296 | INFO     | [payload] control thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:21,338 | INFO     | [payload] validate_post thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:21,703 | INFO     | [data] copytool_out thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:21,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 14:06:33] 2025-06-06 12:05:22,602 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 14:06:33] 2025-06-06 12:05:22,954 | INFO     | [job] queue monitor thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:26,608 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:29,846 | INFO     | job.realtimelogging is not enabled
[2025-06-06 14:06:33] 2025-06-06 12:05:30,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 14:06:33] 2025-06-06 12:05:31,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23359096801088)>', '<ExcThread(monitor, started 23358856984320)>']
[2025-06-06 14:06:33] 2025-06-06 12:05:36,395 | INFO     | all workflow threads have been joined
[2025-06-06 14:06:33] 2025-06-06 12:05:36,396 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 14:06:33] 2025-06-06 12:05:36,396 | INFO     | traces error code: 0
[2025-06-06 14:06:33] 2025-06-06 12:05:36,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 14:06:33] 2025-06-06 12:05:49,475 | INFO     | PID=3569420 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 14:06:33] 2025-06-06 12:05:49,475 | INFO     | .. there are 3 such processes running
[2025-06-06 14:06:33] 2025-06-06 12:05:49,476 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 14:06:33] 2025-06-06 12:05:49,476 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 14:06:33] 2025-06-06 12:05:49,476 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 14:06:33] 2025-06-06 12:05:49,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 14:06:33] 2025-06-06 12:05:49,476 | CRITICAL | thread 'MainThread' is not alive
[2025-06-06 14:06:33] 2025-06-06 12:05:49,476 | INFO     | [monitor] control thread has ended
[2025-06-06 14:06:33] 2025-06-06 12:05:49,573 [wrapper] ==== pilot stdout END ====
[2025-06-06 14:06:33] 2025-06-06 12:05:49,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 14:06:33] 2025-06-06 12:05:49,580 [wrapper] pilotpid: 3569420
[2025-06-06 14:06:33] 2025-06-06 12:05:49,583 [wrapper] Pilot exit status: 0
[2025-06-06 14:06:33] 2025-06-06 12:05:49,594 [wrapper] pandaids: 6678155315
[2025-06-06 14:06:33] 2025-06-06 12:05:49,680 [wrapper] cleanup supervisor_pilot 3699174 3569421
[2025-06-06 14:06:33] 2025-06-06 12:05:49,683 [wrapper] Test setup, not cleaning
[2025-06-06 14:06:33] 2025-06-06 12:05:49,686 [wrapper] apfmon messages muted
[2025-06-06 14:06:33] 2025-06-06 12:05:49,688 [wrapper] ==== wrapper stdout END ====
[2025-06-06 14:06:33] 2025-06-06 12:05:49,691 [wrapper] ==== wrapper stderr END ====
[2025-06-06 14:06:33]  *** Error codes and diagnostics ***
[2025-06-06 14:06:33]     "exeErrorCode": 0,
[2025-06-06 14:06:33]     "exeErrorDiag": "",
[2025-06-06 14:06:33]     "pilotErrorCode": 0,
[2025-06-06 14:06:33]     "pilotErrorDiag": "",
[2025-06-06 14:06:33]  *** Listing of results directory ***
[2025-06-06 14:06:33] total 391820
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc    549845 Jun  2 11:40 pilot3.tar.gz
[2025-06-06 14:06:33] -rwx------ 1 boinc boinc     37140 Jun  4 01:29 runpilot2-wrapper.sh
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc      5111 Jun  4 01:29 queuedata.json
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc       100 Jun  6 12:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 14:06:33] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 12:43 run_atlas
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc       105 Jun  6 12:43 job.xml
[2025-06-06 14:06:33] -rw-r--r-- 2 boinc boinc 213440236 Jun  6 12:43 EVNT.45006593._001926.pool.root.1
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc      6686 Jun  6 12:43 init_data.xml
[2025-06-06 14:06:33] -rw-r--r-- 2 boinc boinc     15093 Jun  6 12:43 start_atlas.sh
[2025-06-06 14:06:33] drwxrwx--x 2 boinc boinc      4096 Jun  6 12:43 shared
[2025-06-06 14:06:33] -rw-r--r-- 2 boinc boinc    564115 Jun  6 12:43 input.tar.gz
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc         0 Jun  6 12:43 boinc_lockfile
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc      2524 Jun  6 12:43 pandaJob.out
[2025-06-06 14:06:33] -rw------- 1 boinc boinc    985732 Jun  6 12:43 agis_schedconf.cvmfs.json
[2025-06-06 14:06:33] -rw------- 1 boinc boinc   1598969 Jun  6 12:43 agis_ddmendpoints.agis.ALL.json
[2025-06-06 14:06:33] drwx------ 6 boinc boinc      4096 Jun  6 12:43 pilot3
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc       529 Jun  6 14:04 boinc_task_state.xml
[2025-06-06 14:06:33] -rw------- 1 boinc boinc 182347718 Jun  6 14:04 HITS.45006595._047983.pool.root.1
[2025-06-06 14:06:33] -rw------- 1 boinc boinc      1027 Jun  6 14:05 memory_monitor_summary.json
[2025-06-06 14:06:33] -rw------- 1 boinc boinc    261846 Jun  6 14:05 log.45006595._047983.job.log.tgz.1
[2025-06-06 14:06:33] -rw------- 1 boinc boinc      7715 Jun  6 14:05 heartbeat.json
[2025-06-06 14:06:33] -rw------- 1 boinc boinc       892 Jun  6 14:05 pilotlog.txt
[2025-06-06 14:06:33] -rw------- 1 boinc boinc        95 Jun  6 14:05 pilot_heartbeat.json
[2025-06-06 14:06:33] -rw------- 1 boinc boinc    489242 Jun  6 14:05 log.45006595._047983.job.log.1
[2025-06-06 14:06:33] -rw------- 1 boinc boinc       357 Jun  6 14:05 output.list
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc       620 Jun  6 14:05 runtime_log
[2025-06-06 14:06:33] -rw------- 1 boinc boinc    768000 Jun  6 14:05 result.tar.gz
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc      9025 Jun  6 14:05 runtime_log.err
[2025-06-06 14:06:33] -rw------- 1 boinc boinc       662 Jun  6 14:05 SK4KDmUFqg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcFaKDm2pQIWm.diag
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc        27 Jun  6 14:06 wrapper_checkpoint.txt
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc      8192 Jun  6 14:06 boinc_mmap_file
[2025-06-06 14:06:33] -rw-r--r-- 1 boinc boinc     21480 Jun  6 14:06 stderr.txt
[2025-06-06 14:06:33] HITS file was successfully produced:
[2025-06-06 14:06:33] -rw------- 1 boinc boinc 182347718 Jun  6 14:04 shared/HITS.pool.root.1
[2025-06-06 14:06:33]  *** Contents of shared directory: ***
[2025-06-06 14:06:33] total 387844
[2025-06-06 14:06:33] -rw-r--r-- 2 boinc boinc 213440236 Jun  6 12:43 ATLAS.root_0
[2025-06-06 14:06:33] -rw-r--r-- 2 boinc boinc     15093 Jun  6 12:43 start_atlas.sh
[2025-06-06 14:06:33] -rw-r--r-- 2 boinc boinc    564115 Jun  6 12:43 input.tar.gz
[2025-06-06 14:06:33] -rw------- 1 boinc boinc 182347718 Jun  6 14:04 HITS.pool.root.1
[2025-06-06 14:06:33] -rw------- 1 boinc boinc    768000 Jun  6 14:05 result.tar.gz
14:06:35 (3565489): run_atlas exited; CPU time 18785.104283
14:06:35 (3565489): called boinc_finish(0)

</stderr_txt>
]]>

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