Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:26:06 (3752905): wrapper (7.7.26015): starting
14:26:06 (3752905): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 14:26:06] Arguments: --nthreads 4
[2025-06-06 14:26:06] Threads: 4
[2025-06-06 14:26:06] Checking for CVMFS
[2025-06-06 14:26:06] No cvmfs_config command found, will try listing directly
[2025-06-06 14:26:06] CVMFS is ok
[2025-06-06 14:26:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 14:26:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 14:26:06] Further information can be found at the LHC@home message board.
[2025-06-06 14:26:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 14:26:06] Checking for apptainer binary...
[2025-06-06 14:26:06] which: no apptainer in ((null))
[2025-06-06 14:26:06] apptainer is not installed, using version from CVMFS
[2025-06-06 14:26:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 14:26:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2025-06-06 14:26:06] apptainer works
[2025-06-06 14:26:06] Set ATHENA_PROC_NUMBER=4
[2025-06-06 14:26:06] Set ATHENA_CORE_NUMBER=4
[2025-06-06 14:26:06] Starting ATLAS job with PandaID=6678155365
[2025-06-06 14:26:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:46:15]  *** The last 200 lines of the pilot log: ***
[2025-06-06 15:46:15]  surl=/scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/log.45006595._048033.job.log.tgz.1
[2025-06-06 15:46:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/d3/log.45006595._048033.job.log.tgz.1
[2025-06-06 15:46:15]  workdir=None
[2025-06-06 15:46:15] ]
[2025-06-06 15:46:15] 2025-06-06 13:45:47,459 | INFO     | transferring file log.45006595._048033.job.log.tgz.1 from /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/log.45006595._048033.job.log.tgz.1 to /scratch/b
[2025-06-06 15:46:15] 2025-06-06 13:45:47,459 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/log.45006595._048033.job.log.tgz.1 /scratch/boinc/var/slot68/slots/0/lo
[2025-06-06 15:46:15] 2025-06-06 13:45:47,477 | INFO     | adding to output.list: log.45006595._048033.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/d3/log.45006595._048033.job.log.tg
[2025-06-06 15:46:15] 2025-06-06 13:45:47,477 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-06 15:46:15] 2025-06-06 13:45:47,477 | INFO     | summary of transferred files:
[2025-06-06 15:46:15] 2025-06-06 13:45:47,478 | INFO     |  -- lfn=log.45006595._048033.job.log.tgz.1, status_code=0, status=transferred
[2025-06-06 15:46:15] 2025-06-06 13:45:47,478 | INFO     | stage-out finished correctly
[2025-06-06 15:46:15] 2025-06-06 13:45:50,878 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-06 15:46:15] 2025-06-06 13:45:52,448 | INFO     | job 6678155365 has state=finished
[2025-06-06 15:46:15] 2025-06-06 13:45:52,449 | INFO     | preparing for final server update for job 6678155365 in state='finished'
[2025-06-06 15:46:15] 2025-06-06 13:45:52,450 | INFO     | this job has now completed (state=finished)
[2025-06-06 15:46:15] 2025-06-06 13:45:52,450 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-06 15:46:15] 2025-06-06 13:45:52,450 | INFO     | log transfer has been attempted: DONE
[2025-06-06 15:46:15] 2025-06-06 13:45:52,450 | INFO     | job 6678155365 has finished - writing final server update
[2025-06-06 15:46:15] 2025-06-06 13:45:52,450 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3398180/.job.ad'
[2025-06-06 15:46:15] 2025-06-06 13:45:52,450 | INFO     | total number of processed events: 400 (read)
[2025-06-06 15:46:15] 2025-06-06 13:45:52,458 | INFO     | executing command: lscpu
[2025-06-06 15:46:15] 2025-06-06 13:45:52,533 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 15:46:15] 2025-06-06 13:45:53,255 | WARNING  | process 3764553 can no longer be monitored (due to stat problems) - aborting
[2025-06-06 15:46:15] 2025-06-06 13:45:53,255 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 15:46:15] 2025-06-06 13:45:53,256 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 15:46:15] 2025-06-06 13:45:53,256 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2876508 B
[2025-06-06 15:46:15] 2025-06-06 13:45:53,257 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15562 B
[2025-06-06 15:46:15] 2025-06-06 13:45:53,257 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,217 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 15:46:15] 2025-06-06 13:45:56,218 | INFO     | using path: /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,224 | INFO     | extracted standard info from prmon json
[2025-06-06 15:46:15] 2025-06-06 13:45:56,225 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 15:46:15] 2025-06-06 13:45:56,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 15:46:15] 2025-06-06 13:45:56,225 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 15:46:15] 2025-06-06 13:45:56,226 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 15:46:15] 2025-06-06 13:45:56,228 | INFO     | fitting pss+swap vs Time
[2025-06-06 15:46:15] 2025-06-06 13:45:56,228 | INFO     | sum of square deviations: 110960220.0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,228 | INFO     | sum of deviations: -1836902760.0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,228 | INFO     | mean x: 1749215243.0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,229 | INFO     | mean y: 2348819.1690140846
[2025-06-06 15:46:15] 2025-06-06 13:45:56,229 | INFO     | -- intersect: 28959918547.31817
[2025-06-06 15:46:15] 2025-06-06 13:45:56,229 | INFO     | intersect: 28959918547.31817
[2025-06-06 15:46:15] 2025-06-06 13:45:56,229 | INFO     | chi2: 0.020474327286555932
[2025-06-06 15:46:15] 2025-06-06 13:45:56,229 | INFO     | -- intersect: 28959918547.31817
[2025-06-06 15:46:15] 2025-06-06 13:45:56,229 | INFO     | current memory leak: -16.55 B/s (using 71 data points, chi2=0.02)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | ..............................
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . Timing measurements:
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . get job = 0 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . initial setup = 1 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . payload setup = 6 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . stage-in = 0 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . payload execution = 4745 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . stage-out = 0 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | . log creation = 0 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,230 | INFO     | ..............................
[2025-06-06 15:46:15] 2025-06-06 13:45:56,249 | INFO     | sufficient remaining disk space (3362227486720 B)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,265 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,314 | INFO     | 
[2025-06-06 15:46:15] 2025-06-06 13:45:56,314 | INFO     | job summary report
[2025-06-06 15:46:15] 2025-06-06 13:45:56,314 | INFO     | --------------------------------------------------
[2025-06-06 15:46:15] 2025-06-06 13:45:56,314 | INFO     | PanDA job id: 6678155365
[2025-06-06 15:46:15] 2025-06-06 13:45:56,314 | INFO     | task id: 45006595
[2025-06-06 15:46:15] 2025-06-06 13:45:56,314 | INFO     | errors: (none)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | pilot state: finished 
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | transexitcode: 0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | exeerrorcode: 0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | exeerrordiag: 
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | exitcode: 0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | exitmsg: OK
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | cpuconsumptiontime: 18240 s
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | nevents: 400
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | neventsw: 0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | pid: 3764553
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | pgrp: 3764553
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | corecount: 4
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | event service: False
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | sizes: {0: 2397353, 4: 2397559, 11: 2397587, 4756: 2423749, 4757: 2432712, 4760: 2432768, 4766: 2433066}
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | --------------------------------------------------
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | 
[2025-06-06 15:46:15] 2025-06-06 13:45:56,315 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2025-06-06 15:46:15] 2025-06-06 13:45:56,321 | INFO     | size of work directory /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365: 3175699 B (within 2537553920 B limit)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,322 | INFO     | pfn file=/scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/HITS.45006595._048033.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,322 | INFO     | total size of present files: 0 B (workdir size: 3175699 B)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,322 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot68/slots/0/PanDA_Pilot-6678155365/HITS.45006595._048033.pool.root.1 since it does not exist
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,334 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,335 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,335 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 15:46:15] 2025-06-06 13:45:56,335 | INFO     | job 6678155365 has completed (purged errors)
[2025-06-06 15:46:15] 2025-06-06 13:45:56,335 | INFO     | overall cleanup function is called
[2025-06-06 15:46:15] 2025-06-06 13:45:56,630 | INFO     | number of running child processes to parent process 3764553: 1
[2025-06-06 15:46:15] 2025-06-06 13:45:56,631 | INFO     | maximum number of monitored processes: 6
[2025-06-06 15:46:15] 2025-06-06 13:45:56,631 | INFO     | aborting job monitoring since job object (job id=6678155365) has expired
[2025-06-06 15:46:15] 2025-06-06 13:45:57,343 | INFO     | --- collectZombieJob: --- 10, [3764553]
[2025-06-06 15:46:15] 2025-06-06 13:45:57,343 | INFO     | zombie collector waiting for pid 3764553
[2025-06-06 15:46:15] 2025-06-06 13:45:57,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 15:46:15] 2025-06-06 13:45:57,343 | INFO     | collected zombie processes
[2025-06-06 15:46:15] 2025-06-06 13:45:57,343 | INFO     | will attempt to kill all subprocesses of pid=3764553
[2025-06-06 15:46:15] 2025-06-06 13:45:57,783 | INFO     | PID=3756887 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-06 15:46:15] 2025-06-06 13:45:57,783 | INFO     | .. there are 5 such processes running
[2025-06-06 15:46:15] 2025-06-06 13:45:57,937 | INFO     | process IDs to be killed: [3764553] (in reverse order)
[2025-06-06 15:46:15] 2025-06-06 13:45:58,050 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 15:46:15] 2025-06-06 13:45:58,050 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 15:46:15] 2025-06-06 13:45:58,062 | INFO     | did not find any defunct processes belonging to 3764553
[2025-06-06 15:46:15] 2025-06-06 13:45:58,071 | INFO     | did not find any defunct processes belonging to 3764553
[2025-06-06 15:46:15] 2025-06-06 13:45:58,072 | INFO     | ready for new job
[2025-06-06 15:46:15] 2025-06-06 13:45:58,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 15:46:15] 2025-06-06 13:45:58,073 | INFO     | **************************************
[2025-06-06 15:46:15] 2025-06-06 13:45:58,073 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 15:46:15] 2025-06-06 13:45:58,073 | INFO     | **************************************
[2025-06-06 15:46:15] 2025-06-06 13:45:58,073 | INFO     | 
[2025-06-06 15:46:15] 2025-06-06 13:45:58,078 | INFO     | architecture information:
[2025-06-06 15:46:15] 2025-06-06 13:45:58,078 | INFO     | executing command: cat /etc/os-release
[2025-06-06 15:46:15] 2025-06-06 13:45:58,091 | INFO     | cat /etc/os-release:
[2025-06-06 15:46:15] NAME="CentOS Linux"
[2025-06-06 15:46:15] VERSION="7 (Core)"
[2025-06-06 15:46:15] ID="centos"
[2025-06-06 15:46:15] ID_LIKE="rhel fedora"
[2025-06-06 15:46:15] VERSION_ID="7"
[2025-06-06 15:46:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 15:46:15] ANSI_COLOR="0;31"
[2025-06-06 15:46:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 15:46:15] HOME_URL="https://www.centos.org/"
[2025-06-06 15:46:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 15:46:15] 
[2025-06-06 15:46:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 15:46:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 15:46:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 15:46:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 15:46:15] 
[2025-06-06 15:46:15] 2025-06-06 13:45:58,091 | INFO     | **************************************
[2025-06-06 15:46:15] 2025-06-06 13:45:58,594 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2025-06-06 15:46:15] 2025-06-06 13:45:58,607 | INFO     | sufficient remaining disk space (3362150940672 B)
[2025-06-06 15:46:15] 2025-06-06 13:45:58,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 15:46:15] 2025-06-06 13:45:58,608 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 15:46:15] 2025-06-06 13:45:58,608 | INFO     | update_server=False
[2025-06-06 15:46:15] 2025-06-06 13:45:58,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 15:46:15] 2025-06-06 13:45:58,608 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 15:46:15] 2025-06-06 13:45:58,608 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 15:46:15] 2025-06-06 13:45:58,608 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:46:15] 2025-06-06 13:45:58,609 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 15:46:15] 2025-06-06 13:45:58,609 | INFO     | aborting loop
[2025-06-06 15:46:15] 2025-06-06 13:45:58,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 15:46:15] 2025-06-06 13:45:58,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 15:46:15] 2025-06-06 13:45:59,003 | INFO     | all data control threads have been joined
[2025-06-06 15:46:15] 2025-06-06 13:45:59,219 | INFO     | all payload control threads have been joined
[2025-06-06 15:46:15] 2025-06-06 13:45:59,613 | INFO     | [job] retrieve thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:45:59,615 | INFO     | [job] job monitor thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:45:59,627 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:45:59,628 | INFO     | all job control threads have been joined
[2025-06-06 15:46:15] 2025-06-06 13:45:59,793 | INFO     | [job] validate thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:45:59,894 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,009 | INFO     | [data] control thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,010 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,039 | INFO     | [payload] failed_post thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,225 | INFO     | [payload] control thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,487 | INFO     | [payload] validate_post thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,614 | INFO     | [data] copytool_out thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,634 | INFO     | [job] control thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:00,985 | INFO     | [data] copytool_in thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:01,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 15:46:15] 2025-06-06 13:46:01,445 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 15:46:15] 2025-06-06 13:46:02,328 | INFO     | [job] queue monitor thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:05,451 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:08,838 | INFO     | job.realtimelogging is not enabled
[2025-06-06 15:46:15] 2025-06-06 13:46:09,844 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 15:46:15] 2025-06-06 13:46:10,021 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22842483144512)>', '<ExcThread(monitor, started 22842043262720)>']
[2025-06-06 15:46:15] 2025-06-06 13:46:10,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 15:46:15] 2025-06-06 13:46:10,671 | INFO     | [monitor] control thread has ended
[2025-06-06 15:46:15] 2025-06-06 13:46:15,047 | INFO     | all workflow threads have been joined
[2025-06-06 15:46:15] 2025-06-06 13:46:15,047 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 15:46:15] 2025-06-06 13:46:15,048 | INFO     | traces error code: 0
[2025-06-06 15:46:15] 2025-06-06 13:46:15,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 15:46:15] 2025-06-06 13:46:15,167 [wrapper] ==== pilot stdout END ====
[2025-06-06 15:46:15] 2025-06-06 13:46:15,170 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 15:46:15] 2025-06-06 13:46:15,173 [wrapper] pilotpid: 3756887
[2025-06-06 15:46:15] 2025-06-06 13:46:15,177 [wrapper] Pilot exit status: 0
[2025-06-06 15:46:15] 2025-06-06 13:46:15,188 [wrapper] pandaids: 6678155365
[2025-06-06 15:46:15] 2025-06-06 13:46:15,264 [wrapper] cleanup supervisor_pilot 3941848 3756888
[2025-06-06 15:46:15] 2025-06-06 13:46:15,267 [wrapper] Test setup, not cleaning
[2025-06-06 15:46:15] 2025-06-06 13:46:15,270 [wrapper] apfmon messages muted
[2025-06-06 15:46:15] 2025-06-06 13:46:15,272 [wrapper] ==== wrapper stdout END ====
[2025-06-06 15:46:15] 2025-06-06 13:46:15,275 [wrapper] ==== wrapper stderr END ====
[2025-06-06 15:46:15]  *** Error codes and diagnostics ***
[2025-06-06 15:46:15]     "exeErrorCode": 0,
[2025-06-06 15:46:15]     "exeErrorDiag": "",
[2025-06-06 15:46:15]     "pilotErrorCode": 0,
[2025-06-06 15:46:15]     "pilotErrorDiag": "",
[2025-06-06 15:46:15]  *** Listing of results directory ***
[2025-06-06 15:46:15] total 387528
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc    495897 Jun  4 01:22 pilot3.tar.gz
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc      5111 Jun  4 01:34 queuedata.json
[2025-06-06 15:46:15] -rwx------ 1 boinc boinc     37140 Jun  4 01:34 runpilot2-wrapper.sh
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc       100 Jun  6 14:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 15:46:15] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 14:26 run_atlas
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc       105 Jun  6 14:26 job.xml
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc      6686 Jun  6 14:26 init_data.xml
[2025-06-06 15:46:15] -rw-r--r-- 2 boinc boinc 214017874 Jun  6 14:26 EVNT.45006593._001928.pool.root.1
[2025-06-06 15:46:15] -rw-r--r-- 2 boinc boinc     15093 Jun  6 14:26 start_atlas.sh
[2025-06-06 15:46:15] drwxrwx--x 2 boinc boinc      4096 Jun  6 14:26 shared
[2025-06-06 15:46:15] -rw-r--r-- 2 boinc boinc    508881 Jun  6 14:26 input.tar.gz
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc         0 Jun  6 14:26 boinc_lockfile
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc      2525 Jun  6 14:26 pandaJob.out
[2025-06-06 15:46:15] -rw------- 1 boinc boinc    985741 Jun  6 14:26 agis_schedconf.cvmfs.json
[2025-06-06 15:46:15] -rw------- 1 boinc boinc   1598969 Jun  6 14:26 agis_ddmendpoints.agis.ALL.json
[2025-06-06 15:46:15] drwx------ 4 boinc boinc      4096 Jun  6 14:26 pilot3
[2025-06-06 15:46:15] -rw------- 1 boinc boinc        95 Jun  6 15:44 pilot_heartbeat.json
[2025-06-06 15:46:15] -rw------- 1 boinc boinc 177514062 Jun  6 15:45 HITS.45006595._048033.pool.root.1
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc       529 Jun  6 15:45 boinc_task_state.xml
[2025-06-06 15:46:15] -rw------- 1 boinc boinc      1030 Jun  6 15:45 memory_monitor_summary.json
[2025-06-06 15:46:15] -rw------- 1 boinc boinc    259686 Jun  6 15:45 log.45006595._048033.job.log.tgz.1
[2025-06-06 15:46:15] -rw------- 1 boinc boinc      7703 Jun  6 15:45 heartbeat.json
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc      8192 Jun  6 15:46 boinc_mmap_file
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc        27 Jun  6 15:46 wrapper_checkpoint.txt
[2025-06-06 15:46:15] -rw------- 1 boinc boinc      4559 Jun  6 15:46 pilotlog.txt
[2025-06-06 15:46:15] -rw------- 1 boinc boinc    473051 Jun  6 15:46 log.45006595._048033.job.log.1
[2025-06-06 15:46:15] -rw------- 1 boinc boinc       357 Jun  6 15:46 output.list
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc       620 Jun  6 15:46 runtime_log
[2025-06-06 15:46:15] -rw------- 1 boinc boinc    747520 Jun  6 15:46 result.tar.gz
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc      9025 Jun  6 15:46 runtime_log.err
[2025-06-06 15:46:15] -rw------- 1 boinc boinc       661 Jun  6 15:46 DsHLDm8Jqg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGGaKDm1JHJNm.diag
[2025-06-06 15:46:15] -rw-r--r-- 1 boinc boinc     22471 Jun  6 15:46 stderr.txt
[2025-06-06 15:46:15] HITS file was successfully produced:
[2025-06-06 15:46:15] -rw------- 1 boinc boinc 177514062 Jun  6 15:45 shared/HITS.pool.root.1
[2025-06-06 15:46:15]  *** Contents of shared directory: ***
[2025-06-06 15:46:15] total 383616
[2025-06-06 15:46:15] -rw-r--r-- 2 boinc boinc 214017874 Jun  6 14:26 ATLAS.root_0
[2025-06-06 15:46:15] -rw-r--r-- 2 boinc boinc     15093 Jun  6 14:26 start_atlas.sh
[2025-06-06 15:46:15] -rw-r--r-- 2 boinc boinc    508881 Jun  6 14:26 input.tar.gz
[2025-06-06 15:46:15] -rw------- 1 boinc boinc 177514062 Jun  6 15:45 HITS.pool.root.1
[2025-06-06 15:46:15] -rw------- 1 boinc boinc    747520 Jun  6 15:46 result.tar.gz
15:46:16 (3752905): run_atlas exited; CPU time 18369.571619
15:46:16 (3752905): called boinc_finish(0)

</stderr_txt>
]]>

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