Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-05 16:23:14 (28408): Detected: vboxwrapper 26206
2025-06-05 16:23:14 (28408): Detected: BOINC client v8.0.2
2025-06-05 16:23:15 (28408): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-06-05 16:23:15 (28408): Successfully copied 'init_data.xml' to the shared directory.
2025-06-05 16:23:16 (28408): Create VM. (boinc_345f650a305ffb72, slot#3)
2025-06-05 16:23:16 (28408): Setting Memory Size for VM. (4800MB)
2025-06-05 16:23:17 (28408): Setting CPU Count for VM. (8)
2025-06-05 16:23:17 (28408): Setting Chipset Options for VM.
2025-06-05 16:23:17 (28408): Setting Graphics Controller Options for VM.
2025-06-05 16:23:17 (28408): Setting Boot Options for VM.
2025-06-05 16:23:18 (28408): Setting Network Configuration for NAT.
2025-06-05 16:23:18 (28408): Enabling VM Network Access.
2025-06-05 16:23:18 (28408): Disabling USB Support for VM.
2025-06-05 16:23:18 (28408): Disabling COM Port Support for VM.
2025-06-05 16:23:19 (28408): Disabling LPT Port Support for VM.
2025-06-05 16:23:19 (28408): Disabling Audio Support for VM.
2025-06-05 16:23:19 (28408): Disabling Clipboard Support for VM.
2025-06-05 16:23:19 (28408): Disabling Drag and Drop Support for VM.
2025-06-05 16:23:20 (28408): Adding storage controller(s) to VM.
2025-06-05 16:23:20 (28408): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-05 16:23:21 (28408): Adding VirtualBox Guest Additions to VM.
2025-06-05 16:23:21 (28408): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-05 16:23:22 (28408): forwarding host port 58093 to guest port 80
2025-06-05 16:23:22 (28408): Enabling remote desktop for VM.
2025-06-05 16:23:22 (28408): Enabling shared directory for VM.
2025-06-05 16:23:23 (28408): Starting VM using VBoxManage interface. (boinc_345f650a305ffb72, slot#3)
2025-06-05 16:23:28 (28408): Successfully started VM. (PID = '13460')
2025-06-05 16:23:28 (28408): Reporting VM Process ID to BOINC.
2025-06-05 16:23:28 (28408): Guest Log: BIOS: VirtualBox 5.2.44
2025-06-05 16:23:28 (28408): Guest Log: CPUID EDX: 0x178bfbff
2025-06-05 16:23:28 (28408): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-05 16:23:28 (28408): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-05 16:23:28 (28408): Detected: Web Application Enabled (http://localhost:58093)
2025-06-05 16:23:28 (28408): Detected: Remote Desktop Enabled (localhost:58094)
2025-06-05 16:23:28 (28408): Preference change detected
2025-06-05 16:23:28 (28408): Setting CPU throttle for VM. (100%)
2025-06-05 16:23:28 (28408): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-05 16:23:30 (28408): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-05 16:23:30 (28408): Guest Log: BIOS: Booting from Hard Disk...
2025-06-05 16:23:34 (28408): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-05 16:23:34 (28408): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-05 16:23:34 (28408): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-05 16:23:42 (28408): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-05 16:23:42 (28408): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-05 16:23:51 (28408): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.000177 main     Log opened 2025-06-05T16:23:50.236209000Z
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.000296 main     OS Product: Linux
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.000338 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.000371 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.000469 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.000470 main     Process ID: 1370
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.000471 main     Package type: LINUX_64BITS_GENERIC
2025-06-05 16:23:51 (28408): Guest Log: 00:00:00.001421 main     5.2.32 r132073 started. Verbose level = 0
2025-06-05 16:23:51 (28408): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-05 16:23:51 (28408): Guest Log: [INFO] Mounting shared directory
2025-06-05 16:23:52 (28408): Guest Log: [INFO] Checking for init_data.xml
2025-06-05 16:24:01 (28408): Guest Log: 00:00:10.004576 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 789 067 128 000ns (GuestNow=1 749 129 841 172 214 000 ns GuestLast=1 749 140 630 239 342 000 ns fSetTimeLastLoop=true )
2025-06-05 16:24:37 (28408): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-05 16:24:37 (28408): Guest Log: [INFO] Detected branch: prod
2025-06-05 16:24:37 (28408): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-05 16:24:37 (28408): Guest Log: Copying input files
2025-06-05 16:24:39 (28408): Guest Log: Copied input files into RunAtlas.
2025-06-05 16:24:39 (28408): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-05 16:24:39 (28408): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-05 16:24:39 (28408): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-05 16:24:39 (28408): Guest Log: Further information can be found at the LHC@home message board.
2025-06-05 16:24:48 (28408): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-05 16:24:48 (28408): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-05 16:24:48 (28408): Guest Log: 2.6.3.0 1667 0 32168 146820 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-05 16:24:50 (28408): Guest Log: copied the webapp to /var/www
2025-06-05 16:24:50 (28408): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-05 16:24:50 (28408): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-05 16:24:50 (28408): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-05 16:24:50 (28408): Guest Log:  *** Starting ATLAS job. (PandaID=6665936209 taskID=44871837) ***
2025-06-05 17:24:03 (28408): VM state change detected. (old = 'running', new = 'paused')
2025-06-05 17:40:08 (28408): VM state change detected. (old = 'paused', new = 'running')
2025-06-05 18:19:40 (28408): Status Report: Elapsed Time: '6000.000000'
2025-06-05 18:19:40 (28408): Status Report: CPU Time: '43608.140625'
2025-06-05 18:27:05 (28408): Guest Log:  *** Job finished ***
2025-06-05 18:27:05 (28408): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:10:49,899 | INFO     | [data] copytool_out thread has finished
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:10:50,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:10:54,481 | INFO     | [data] queue_monitor thread has finished
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:10:56,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911639922496)>', '<ExcThread(monitor, started 139910832973568)>']
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:10:56,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:10:56,348 | INFO     | [monitor] control thread has ended
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,346 | INFO     | all workflow threads have been joined
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,347 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,347 | INFO     | traces error code: 0
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,347 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,455 [wrapper] ==== pilot stdout END ====
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,462 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,468 [wrapper] pilotpid: 6008
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,474 [wrapper] Pilot exit status: 0
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,621 [wrapper] pandaids: 6665936209
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,668 [wrapper] cleanup supervisor_pilot  5000 6009
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,681 [wrapper] Test setup, not cleaning
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,687 [wrapper] apfmon messages muted
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,693 [wrapper] ==== wrapper stdout END ====
2025-06-05 18:27:05 (28408): Guest Log: 2025-06-05 15:11:01,700 [wrapper] ==== wrapper stderr END ====
2025-06-05 18:27:05 (28408): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 18:27:05 (28408): Guest Log:     "exeErrorCode": 0,
2025-06-05 18:27:05 (28408): Guest Log:     "exeErrorDiag": "",
2025-06-05 18:27:05 (28408): Guest Log:     "pilotErrorCode": 0,
2025-06-05 18:27:05 (28408): Guest Log:     "pilotErrorDiag": "",
2025-06-05 18:27:05 (28408): Guest Log:  *** Listing of results directory ***
2025-06-05 18:27:05 (28408): Guest Log: total 197244
2025-06-05 18:27:05 (28408): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 26 12:05 pilot3.tar.gz
2025-06-05 18:27:05 (28408): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 26 12:33 queuedata.json
2025-06-05 18:27:05 (28408): Guest Log: -rwx------. 1 atlas atlas     37140 May 26 12:35 runpilot2-wrapper.sh
2025-06-05 18:27:05 (28408): Guest Log: -rwxr-xr-x. 1 atlas atlas      6313 Jun  5 13:24 init_data.xml
2025-06-05 18:27:05 (28408): Guest Log: -rwxr-xr-x. 1 atlas atlas    508873 Jun  5 13:24 input.tar.gz
2025-06-05 18:27:05 (28408): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  5 13:24 start_atlas.sh
2025-06-05 18:27:05 (28408): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  5 13:24 EVNT.44871834._002029.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 18:27:05 (28408): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  5 13:24 pandaJob.out
2025-06-05 18:27:05 (28408): Guest Log: -rw-------. 1 atlas atlas    983210 Jun  5 13:25 agis_schedconf.cvmfs.json
2025-06-05 18:27:05 (28408): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  5 13:25 agis_ddmendpoints.agis.ALL.json
2025-06-05 18:27:05 (28408): Guest Log: drwx------. 4 atlas atlas      4096 Jun  5 13:25 pilot3
2025-06-05 18:27:05 (28408): Guest Log: -rw-------. 1 atlas atlas 196497129 Jun  5 15:10 HITS.44871837._050952.pool.root.1
2025-06-05 18:27:05 (28408): Guest Log: -rw-------. 1 atlas atlas      1031 Jun  5 15:10 memory_monitor_summary.json
2025-06-05 18:27:05 (28408): Guest Log: -rw-------. 1 atlas atlas    324942 Jun  5 15:10 log.44871837._050952.job.log.tgz.1
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas        95 Jun  5 15:10 pilot_heartbeat.json
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas      7734 Jun  5 15:10 heartbeat.json
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  5 15:11 pilotlog.txt
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas    540086 Jun  5 15:11 log.44871837._050952.job.log.1
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas       357 Jun  5 15:11 output.list
2025-06-05 18:27:06 (28408): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  5 15:11 runtime_log
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas    880640 Jun  5 15:11 result.tar.gz
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas       648 Jun  5 15:11 vIVLDmoEmd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmo8PKDmUXj88m.diag
2025-06-05 18:27:06 (28408): Guest Log: -rw-r--r--. 1 atlas atlas      8577 Jun  5 15:11 runtime_log.err
2025-06-05 18:27:06 (28408): Guest Log: Looking for outputfile HITS.44871837._050952.pool.root.1
2025-06-05 18:27:06 (28408): Guest Log: HITS file was successfully produced
2025-06-05 18:27:06 (28408): Guest Log: -rw-------. 1 atlas atlas 196497129 Jun  5 15:10 /home/atlas/RunAtlas/HITS.44871837._050952.pool.root.1
2025-06-05 18:27:06 (28408): Guest Log: Successfully finished the ATLAS job!
2025-06-05 18:27:06 (28408): Guest Log: Copying the results back to the shared directory!
2025-06-05 18:27:06 (28408): Guest Log:  *** Contents of shared directory: ***
2025-06-05 18:27:06 (28408): Guest Log: total 410768
2025-06-05 18:27:06 (28408): Guest Log: -rwxrwxrwx. 1 root root 222708842 Jun  5 13:23 ATLAS.root_0
2025-06-05 18:27:06 (28408): Guest Log: -rwxrwxrwx. 1 root root 196497129 Jun  5  2025 HITS.pool.root.1
2025-06-05 18:27:06 (28408): Guest Log: -rwxrwxrwx. 1 root root      6313 Jun  5 13:23 init_data.xml
2025-06-05 18:27:06 (28408): Guest Log: -rwxrwxrwx. 1 root root    508873 Jun  4 04:11 input.tar.gz
2025-06-05 18:27:06 (28408): Guest Log: -rwxrwxrwx. 1 root root    880640 Jun  5  2025 result.tar.gz
2025-06-05 18:27:06 (28408): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 04:11 start_atlas.sh
2025-06-05 18:27:06 (28408): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 18:27:06 (28408): VM Completion File Detected.
2025-06-05 18:27:06 (28408): Powering off VM.
2025-06-05 18:27:07 (28408): Successfully stopped VM.
2025-06-05 18:27:07 (28408): Deregistering VM. (boinc_345f650a305ffb72, slot#3)
2025-06-05 18:27:07 (28408): Removing network bandwidth throttle group from VM.
2025-06-05 18:27:07 (28408): Removing VM from VirtualBox.
18:27:13 (28408): called boinc_finish(0)

</stderr_txt>
]]>

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