Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:38:23 (749999): wrapper (7.7.26015): starting
16:38:23 (749999): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 16:38:23] Arguments: --nthreads 4
[2025-06-05 16:38:23] Threads: 4
[2025-06-05 16:38:23] Checking for CVMFS
[2025-06-05 16:38:23] No cvmfs_config command found, will try listing directly
[2025-06-05 16:38:23] CVMFS is ok
[2025-06-05 16:38:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 16:38:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 16:38:23] Further information can be found at the LHC@home message board.
[2025-06-05 16:38:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 16:38:23] Checking for apptainer binary...
[2025-06-05 16:38:23] which: no apptainer in ((null))
[2025-06-05 16:38:23] apptainer is not installed, using version from CVMFS
[2025-06-05 16:38:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 16:38:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-05 16:38:23] apptainer works
[2025-06-05 16:38:23] Set ATHENA_PROC_NUMBER=4
[2025-06-05 16:38:23] Set ATHENA_CORE_NUMBER=4
[2025-06-05 16:38:23] Starting ATLAS job with PandaID=6678156114
[2025-06-05 16:38:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:42:26 (13775): wrapper (7.7.26015): starting
18:42:26 (13775): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 18:42:26] Arguments: --nthreads 4
[2025-06-05 18:42:26] Threads: 4
[2025-06-05 18:42:26] This job has been restarted, cleaning up previous attempt
[2025-06-05 18:42:26] Checking for CVMFS
[2025-06-05 18:42:26] No cvmfs_config command found, will try listing directly
[2025-06-05 18:42:26] CVMFS is ok
[2025-06-05 18:42:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 18:42:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 18:42:26] Further information can be found at the LHC@home message board.
[2025-06-05 18:42:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 18:42:26] Checking for apptainer binary...
[2025-06-05 18:42:26] which: no apptainer in ((null))
[2025-06-05 18:42:26] apptainer is not installed, using version from CVMFS
[2025-06-05 18:42:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 18:42:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-06-05 18:42:27] apptainer works
[2025-06-05 18:42:27] Set ATHENA_PROC_NUMBER=4
[2025-06-05 18:42:27] Set ATHENA_CORE_NUMBER=4
[2025-06-05 18:42:27] Starting ATLAS job with PandaID=6678156114
[2025-06-05 18:42:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 21:00:19]  *** The last 200 lines of the pilot log: ***
[2025-06-05 21:00:19] 2025-06-05 18:56:52,692 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 21:00:19] 2025-06-05 18:56:52,692 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 21:00:19] 2025-06-05 18:56:52,692 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 21:00:19] 2025-06-05 18:56:52,695 | INFO     | fitting pss+swap vs Time
[2025-06-05 21:00:19] 2025-06-05 18:56:52,695 | INFO     | sum of square deviations: 713140813.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,696 | INFO     | sum of deviations: 11521816762.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,696 | INFO     | mean x: 1749145789.5
[2025-06-05 21:00:19] 2025-06-05 18:56:52,696 | INFO     | mean y: 2278091.0454545454
[2025-06-05 21:00:19] 2025-06-05 18:56:52,696 | INFO     | -- intersect: -28257690921.053173
[2025-06-05 21:00:19] 2025-06-05 18:56:52,696 | INFO     | intersect: -28257690921.053173
[2025-06-05 21:00:19] 2025-06-05 18:56:52,697 | INFO     | chi2: 2.357472956295539
[2025-06-05 21:00:19] 2025-06-05 18:56:52,697 | INFO     | sum of square deviations: 635130048.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | sum of deviations: 19148947309.000004
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | mean x: 1749145637.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | mean y: 2292503.1181102362
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | -- intersect: -52733832553.71474
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | intersect: -52733832553.71474
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | chi2: 1.5483931200710397
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | current chi2=1.5483931200710397 (change=34.31979289789448 %)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,698 | INFO     | sum of square deviations: 563026370.5
[2025-06-05 21:00:19] 2025-06-05 18:56:52,699 | INFO     | sum of deviations: 18327442131.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,699 | INFO     | mean x: 1749145484.5
[2025-06-05 21:00:19] 2025-06-05 18:56:52,699 | INFO     | mean y: 2290764.8524590163
[2025-06-05 21:00:19] 2025-06-05 18:56:52,699 | INFO     | -- intersect: -56935295688.52256
[2025-06-05 21:00:19] 2025-06-05 18:56:52,699 | INFO     | intersect: -56935295688.52256
[2025-06-05 21:00:19] 2025-06-05 18:56:52,700 | INFO     | chi2: 1.5502094033611113
[2025-06-05 21:00:19] 2025-06-05 18:56:52,700 | INFO     | current chi2=1.5502094033611113 (change=-0.11730117284351745 %)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,700 | INFO     | right removable region: 121
[2025-06-05 21:00:19] 2025-06-05 18:56:52,700 | INFO     | sum of square deviations: 635130048.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,701 | INFO     | sum of deviations: -7305474619.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,701 | INFO     | mean x: 1749145942.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,701 | INFO     | mean y: 2314250.779527559
[2025-06-05 21:00:19] 2025-06-05 18:56:52,701 | INFO     | -- intersect: 20121565929.150513
[2025-06-05 21:00:19] 2025-06-05 18:56:52,701 | INFO     | intersect: 20121565929.150513
[2025-06-05 21:00:19] 2025-06-05 18:56:52,701 | INFO     | chi2: 0.845533836967716
[2025-06-05 21:00:19] 2025-06-05 18:56:52,701 | INFO     | current chi2=0.845533836967716 (change=64.13389028664142 %)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,702 | INFO     | sum of square deviations: 563026370.5
[2025-06-05 21:00:19] 2025-06-05 18:56:52,702 | INFO     | sum of deviations: -7800965327.5
[2025-06-05 21:00:19] 2025-06-05 18:56:52,702 | INFO     | mean x: 1749146094.5
[2025-06-05 21:00:19] 2025-06-05 18:56:52,702 | INFO     | mean y: 2315287.12295082
[2025-06-05 21:00:19] 2025-06-05 18:56:52,702 | INFO     | -- intersect: 24237464386.460808
[2025-06-05 21:00:19] 2025-06-05 18:56:52,703 | INFO     | intersect: 24237464386.460808
[2025-06-05 21:00:19] 2025-06-05 18:56:52,703 | INFO     | chi2: 0.8445317249289704
[2025-06-05 21:00:19] 2025-06-05 18:56:52,703 | INFO     | current chi2=0.8445317249289704 (change=0.1185182656130442 %)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,703 | INFO     | left removable region: 20
[2025-06-05 21:00:19] 2025-06-05 18:56:52,703 | INFO     | sum of square deviations: 319447850.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | sum of deviations: -415242128.00000006
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | mean x: 1749146064.0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | mean y: 2333306.376237624
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | -- intersect: 2276003746.7882934
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | intersect: 2276003746.7882934
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | chi2: 0.0006224378553664882
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | -- intersect: 2276003746.7882934
[2025-06-05 21:00:19] 2025-06-05 18:56:52,704 | INFO     | current memory leak: -1.30 B/s (using 101 data points, chi2=0.00)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,705 | INFO     | ..............................
[2025-06-05 21:00:19] 2025-06-05 18:56:52,705 | INFO     | . Timing measurements:
[2025-06-05 21:00:19] 2025-06-05 18:56:52,705 | INFO     | . get job = 0 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,706 | INFO     | . initial setup = 1 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,706 | INFO     | . payload setup = 8 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,706 | INFO     | . stage-in = 0 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,706 | INFO     | . payload execution = 8014 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,706 | INFO     | . stage-out = 0 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,706 | INFO     | . log creation = 0 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,706 | INFO     | ..............................
[2025-06-05 21:00:19] 2025-06-05 18:56:52,800 | INFO     | 
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | job summary report
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | --------------------------------------------------
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | PanDA job id: 6678156114
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | task id: 45006595
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | errors: (none)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | pilot state: finished 
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | transexitcode: 0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | exeerrorcode: 0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | exeerrordiag: 
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | exitcode: 0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | exitmsg: OK
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | cpuconsumptiontime: 30398 s
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | nevents: 400
[2025-06-05 21:00:19] 2025-06-05 18:56:52,801 | INFO     | neventsw: 0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | pid: 305527
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | pgrp: 305527
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | corecount: 4
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | event service: False
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | sizes: {0: 2397354, 1: 2397354, 5: 2397588, 11: 2397644, 8027: 2425386, 8028: 2434351, 8030: 2434535, 8037: 2434705}
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | --------------------------------------------------
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | 
[2025-06-05 21:00:19] 2025-06-05 18:56:52,802 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,829 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,830 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,830 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,830 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | job 6678156114 has completed (purged errors)
[2025-06-05 21:00:19] 2025-06-05 18:56:52,831 | INFO     | overall cleanup function is called
[2025-06-05 21:00:19] 2025-06-05 18:56:53,840 | INFO     | --- collectZombieJob: --- 10, [305527]
[2025-06-05 21:00:19] 2025-06-05 18:56:53,841 | INFO     | zombie collector waiting for pid 305527
[2025-06-05 21:00:19] 2025-06-05 18:56:53,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 21:00:19] 2025-06-05 18:56:53,841 | INFO     | collected zombie processes
[2025-06-05 21:00:19] 2025-06-05 18:56:53,841 | INFO     | will attempt to kill all subprocesses of pid=305527
[2025-06-05 21:00:19] 2025-06-05 18:56:55,079 | INFO     | PID=116925 has CPU usage=16.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 21:00:19] 2025-06-05 18:56:55,079 | INFO     | .. there are 21 such processes running
[2025-06-05 21:00:19] 2025-06-05 18:56:55,251 | INFO     | process IDs to be killed: [305527] (in reverse order)
[2025-06-05 21:00:19] 2025-06-05 18:56:55,513 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 21:00:19] 2025-06-05 18:56:55,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 21:00:19] 2025-06-05 18:56:55,540 | INFO     | did not find any defunct processes belonging to 305527
[2025-06-05 21:00:19] 2025-06-05 18:56:55,566 | INFO     | did not find any defunct processes belonging to 305527
[2025-06-05 21:00:19] 2025-06-05 18:56:55,566 | INFO     | ready for new job
[2025-06-05 21:00:19] 2025-06-05 18:56:55,567 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 21:00:19] 2025-06-05 18:56:55,569 | INFO     | **************************************
[2025-06-05 21:00:19] 2025-06-05 18:56:55,569 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 21:00:19] 2025-06-05 18:56:55,569 | INFO     | **************************************
[2025-06-05 21:00:19] 2025-06-05 18:56:55,569 | INFO     | 
[2025-06-05 21:00:19] 2025-06-05 18:56:55,576 | INFO     | architecture information:
[2025-06-05 21:00:19] 2025-06-05 18:56:55,577 | INFO     | executing command: cat /etc/os-release
[2025-06-05 21:00:19] 2025-06-05 18:56:55,598 | INFO     | cat /etc/os-release:
[2025-06-05 21:00:19] NAME="CentOS Linux"
[2025-06-05 21:00:19] VERSION="7 (Core)"
[2025-06-05 21:00:19] ID="centos"
[2025-06-05 21:00:19] ID_LIKE="rhel fedora"
[2025-06-05 21:00:19] VERSION_ID="7"
[2025-06-05 21:00:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 21:00:19] ANSI_COLOR="0;31"
[2025-06-05 21:00:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 21:00:19] HOME_URL="https://www.centos.org/"
[2025-06-05 21:00:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 21:00:19] 
[2025-06-05 21:00:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 21:00:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 21:00:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 21:00:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 21:00:19] 
[2025-06-05 21:00:19] 2025-06-05 18:56:55,599 | INFO     | **************************************
[2025-06-05 21:00:19] 2025-06-05 18:56:56,101 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-06-05 21:00:19] 2025-06-05 18:56:56,119 | INFO     | sufficient remaining disk space (3324245966848 B)
[2025-06-05 21:00:19] 2025-06-05 18:56:56,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 21:00:19] 2025-06-05 18:56:56,119 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 21:00:19] 2025-06-05 18:56:56,120 | INFO     | update_server=False
[2025-06-05 21:00:19] 2025-06-05 18:56:56,120 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 21:00:19] 2025-06-05 18:56:56,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 21:00:19] 2025-06-05 18:56:56,428 | INFO     | all payload control threads have been joined
[2025-06-05 21:00:19] 2025-06-05 18:56:56,479 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 21:00:19] 2025-06-05 18:56:56,479 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 21:00:19] 2025-06-05 18:56:56,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:00:19] 2025-06-05 18:56:56,480 | INFO     | will abort loop
[2025-06-05 21:00:19] 2025-06-05 18:56:56,928 | INFO     | all data control threads have been joined
[2025-06-05 21:00:19] 2025-06-05 18:56:57,030 | INFO     | all job control threads have been joined
[2025-06-05 21:00:19] 2025-06-05 18:56:57,086 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 21:00:19] 2025-06-05 18:56:57,086 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 21:00:19] 2025-06-05 18:56:57,087 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 21:00:19] 2025-06-05 18:56:57,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 21:00:19] 2025-06-05 18:56:57,124 | INFO     | [job] retrieve thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,218 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,286 | INFO     | [payload] failed_post thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,433 | INFO     | [payload] control thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,476 | INFO     | [job] validate thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,484 | INFO     | [job] job monitor thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:00:19] 2025-06-05 18:56:57,934 | INFO     | [data] control thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,979 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:57,989 | INFO     | [data] copytool_in thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:58,036 | INFO     | [job] control thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:58,094 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:58,111 | INFO     | [payload] validate_post thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:58,601 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:58,816 | INFO     | [job] queue monitor thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:56:59,100 | INFO     | [data] copytool_out thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:57:00,163 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 21:00:19] 2025-06-05 18:57:00,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23062476367680)>', '<ExcThread(monitor, started 23062239995648)>']
[2025-06-05 21:00:19] 2025-06-05 18:57:01,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 21:00:19] 2025-06-05 18:57:01,103 | INFO     | [monitor] control thread has ended
[2025-06-05 21:00:19] 2025-06-05 18:57:05,968 | INFO     | all workflow threads have been joined
[2025-06-05 21:00:19] 2025-06-05 18:57:05,968 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 21:00:19] 2025-06-05 18:57:05,968 | INFO     | traces error code: 0
[2025-06-05 21:00:19] 2025-06-05 18:57:05,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 21:00:19] 2025-06-05 18:57:06,111 [wrapper] ==== pilot stdout END ====
[2025-06-05 21:00:19] 2025-06-05 18:57:06,114 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 21:00:19] 2025-06-05 18:57:06,118 [wrapper] pilotpid: 116925
[2025-06-05 21:00:19] 2025-06-05 18:57:06,122 [wrapper] Pilot exit status: 0
[2025-06-05 21:00:19] 2025-06-05 18:57:06,135 [wrapper] pandaids: 6678156114 6678156114
[2025-06-05 21:00:19] 2025-06-05 18:57:06,285 [wrapper] cleanup supervisor_pilot  989506 116928
[2025-06-05 21:00:19] 2025-06-05 18:57:06,289 [wrapper] Test setup, not cleaning
[2025-06-05 21:00:19] 2025-06-05 18:57:06,294 [wrapper] apfmon messages muted
[2025-06-05 21:00:19] 2025-06-05 18:57:06,298 [wrapper] ==== wrapper stdout END ====
[2025-06-05 21:00:19] 2025-06-05 18:57:06,302 [wrapper] ==== wrapper stderr END ====
[2025-06-05 21:00:19]  *** Error codes and diagnostics ***
[2025-06-05 21:00:19]     "exeErrorCode": 0,
[2025-06-05 21:00:19]     "exeErrorDiag": "",
[2025-06-05 21:00:19]     "pilotErrorCode": 0,
[2025-06-05 21:00:19]     "pilotErrorDiag": "",
[2025-06-05 21:00:19]  *** Listing of results directory ***
[2025-06-05 21:00:19] total 598876
[2025-06-05 21:00:19] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc    495897 Jun  4 01:37 pilot3.tar.gz
[2025-06-05 21:00:19] -rwx------ 1 boinc boinc     37140 Jun  4 01:40 runpilot2-wrapper.sh
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc      5111 Jun  4 01:40 queuedata.json
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc       100 Jun  5 16:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 21:00:19] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 16:38 run_atlas
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc       105 Jun  5 16:38 job.xml
[2025-06-05 21:00:19] -rw-r--r-- 3 boinc boinc 213868357 Jun  5 16:38 EVNT.45006593._001931.pool.root.1
[2025-06-05 21:00:19] -rw-r--r-- 3 boinc boinc 213868357 Jun  5 16:38 ATLAS.root_0
[2025-06-05 21:00:19] -rw-r--r-- 2 boinc boinc     15093 Jun  5 16:38 start_atlas.sh
[2025-06-05 21:00:19] drwxrwx--x 2 boinc boinc      4096 Jun  5 16:38 shared
[2025-06-05 21:00:19] -rw-r--r-- 2 boinc boinc    508884 Jun  5 16:38 input.tar.gz
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc         0 Jun  5 16:38 boinc_lockfile
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc      2525 Jun  5 18:42 pandaJob.out
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc      6691 Jun  5 18:42 init_data.xml
[2025-06-05 21:00:19] -rw------- 1 boinc boinc    983229 Jun  5 18:42 agis_schedconf.cvmfs.json
[2025-06-05 21:00:19] -rw------- 1 boinc boinc 179603521 Jun  5 20:56 HITS.45006595._048101.pool.root.1
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc       530 Jun  5 20:56 boinc_task_state.xml
[2025-06-05 21:00:19] -rw------- 1 boinc boinc      1040 Jun  5 20:56 memory_monitor_summary.json
[2025-06-05 21:00:19] -rw------- 1 boinc boinc   1598969 Jun  5 20:56 agis_ddmendpoints.agis.ALL.json
[2025-06-05 21:00:19] -rw------- 1 boinc boinc    280754 Jun  5 20:56 log.45006595._048101.job.log.tgz.1
[2025-06-05 21:00:19] -rw------- 1 boinc boinc      7724 Jun  5 20:56 heartbeat.json
[2025-06-05 21:00:19] -rw------- 1 boinc boinc        96 Jun  5 20:56 pilot_heartbeat.json
[2025-06-05 21:00:19] -rw------- 1 boinc boinc      4551 Jun  5 20:57 pilotlog.txt
[2025-06-05 21:00:19] -rw------- 1 boinc boinc    756076 Jun  5 20:57 log.45006595._048101.job.log.1
[2025-06-05 21:00:19] -rw------- 1 boinc boinc       357 Jun  5 20:57 output.list
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc       620 Jun  5 20:57 runtime_log
[2025-06-05 21:00:19] -rw------- 1 boinc boinc   1054720 Jun  5 20:57 result.tar.gz
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc      9117 Jun  5 20:57 runtime_log.err
[2025-06-05 21:00:19] -rw------- 1 boinc boinc       792 Jun  5 20:57 KDwMDm1Pqg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGHaKDmJLgHLm.diag
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc        27 Jun  5 20:59 wrapper_checkpoint.txt
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc      8192 Jun  5 21:00 boinc_mmap_file
[2025-06-05 21:00:19] -rw-r--r-- 1 boinc boinc     22575 Jun  5 21:00 stderr.txt
[2025-06-05 21:00:19] HITS file was successfully produced:
[2025-06-05 21:00:19] -rw------- 1 boinc boinc 179603521 Jun  5 20:56 shared/HITS.pool.root.1
[2025-06-05 21:00:19]  *** Contents of shared directory: ***
[2025-06-05 21:00:19] total 385808
[2025-06-05 21:00:19] -rw-r--r-- 3 boinc boinc 213868357 Jun  5 16:38 ATLAS.root_0
[2025-06-05 21:00:19] -rw-r--r-- 2 boinc boinc     15093 Jun  5 16:38 start_atlas.sh
[2025-06-05 21:00:19] -rw-r--r-- 2 boinc boinc    508884 Jun  5 16:38 input.tar.gz
[2025-06-05 21:00:19] -rw------- 1 boinc boinc 179603521 Jun  5 20:56 HITS.pool.root.1
[2025-06-05 21:00:19] -rw------- 1 boinc boinc   1054720 Jun  5 20:57 result.tar.gz
21:00:20 (13775): run_atlas exited; CPU time 30804.502923
21:00:20 (13775): called boinc_finish(0)

</stderr_txt>
]]>

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