Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:07:56 (7710): wrapper (7.7.26015): starting
00:07:56 (7710): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 00:07:56] Arguments: --nthreads 10
[2025-06-04 00:07:56] Threads: 10
[2025-06-04 00:07:56] Checking for CVMFS
[2025-06-04 00:07:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:07:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:07:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:07:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:07:57] 2.11.2.0 30725 103187 279440 146767 0 411 17902856 18432000 13193 130560 0 453931085 99.151 863245927 36472 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 00:07:57] CVMFS is ok
[2025-06-04 00:07:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 00:07:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 00:07:57] Further information can be found at the LHC@home message board.
[2025-06-04 00:07:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:07:57] Checking for apptainer binary...
[2025-06-04 00:07:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:07:57] Running /usr/bin/apptainer --version
[2025-06-04 00:07:57] apptainer version 1.3.2-1.el7
[2025-06-04 00:07:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 00:08:04] c-210-28.aglt2.org
[2025-06-04 00:08:04] apptainer works
[2025-06-04 00:08:04] Set ATHENA_PROC_NUMBER=10
[2025-06-04 00:08:04] Set ATHENA_CORE_NUMBER=10
[2025-06-04 00:08:04] Starting ATLAS job with PandaID=6678155204
[2025-06-04 00:08:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 03:27:06]  *** The last 200 lines of the pilot log: ***
[2025-06-04 03:27:06] 2025-06-04 07:26:46,103 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:27:06] 2025-06-04 07:26:48,607 | INFO     | monitor loop #809: job 0:6678155204 is in state 'finished'
[2025-06-04 03:27:06] 2025-06-04 07:26:48,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:27:06] 2025-06-04 07:26:51,117 | INFO     | monitor loop #810: job 0:6678155204 is in state 'finished'
[2025-06-04 03:27:06] 2025-06-04 07:26:51,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 03:27:06] 2025-06-04 07:26:51,833 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 03:27:06] 2025-06-04 07:26:51,834 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678155204/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 03:27:06] 2025-06-04 07:26:51,838 | INFO     | extracted standard info from prmon json
[2025-06-04 03:27:06] 2025-06-04 07:26:51,838 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 03:27:06] 2025-06-04 07:26:51,838 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 03:27:06] 2025-06-04 07:26:51,838 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 03:27:06] 2025-06-04 07:26:51,839 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 03:27:06] 2025-06-04 07:26:51,843 | INFO     | fitting pss+swap vs Time
[2025-06-04 03:27:06] 2025-06-04 07:26:51,844 | INFO     | sum of square deviations: 2194602603.2448025
[2025-06-04 03:27:06] 2025-06-04 07:26:51,845 | INFO     | sum of deviations: 43846029972.72915
[2025-06-04 03:27:06] 2025-06-04 07:26:51,845 | INFO     | mean x: 1749016113.7135417
[2025-06-04 03:27:06] 2025-06-04 07:26:51,845 | INFO     | mean y: 2509799.1041666665
[2025-06-04 03:27:06] 2025-06-04 07:26:51,845 | INFO     | -- intersect: -34941134590.6751
[2025-06-04 03:27:06] 2025-06-04 07:26:51,845 | INFO     | intersect: -34941134590.6751
[2025-06-04 03:27:06] 2025-06-04 07:26:51,846 | INFO     | chi2: 3.607023364310592
[2025-06-04 03:27:06] 2025-06-04 07:26:51,846 | INFO     | sum of square deviations: 2027579418.0106902
[2025-06-04 03:27:06] 2025-06-04 07:26:51,847 | INFO     | sum of deviations: 55714411235.82889
[2025-06-04 03:27:06] 2025-06-04 07:26:51,848 | INFO     | mean x: 1749015961.2192514
[2025-06-04 03:27:06] 2025-06-04 07:26:51,848 | INFO     | mean y: 2520378.4919786095
[2025-06-04 03:27:06] 2025-06-04 07:26:51,848 | INFO     | -- intersect: -48057443959.183174
[2025-06-04 03:27:06] 2025-06-04 07:26:51,848 | INFO     | intersect: -48057443959.183174
[2025-06-04 03:27:06] 2025-06-04 07:26:51,848 | INFO     | chi2: 2.819691115577717
[2025-06-04 03:27:06] 2025-06-04 07:26:51,849 | INFO     | current chi2=2.819691115577717 (change=21.827755720217166 %)
[2025-06-04 03:27:06] 2025-06-04 07:26:51,849 | INFO     | right removable region: 186
[2025-06-04 03:27:06] 2025-06-04 07:26:51,849 | INFO     | sum of square deviations: 2027554408.0106902
[2025-06-04 03:27:06] 2025-06-04 07:26:51,850 | INFO     | sum of deviations: -3840217371.5133686
[2025-06-04 03:27:06] 2025-06-04 07:26:51,851 | INFO     | mean x: 1749016266.2192514
[2025-06-04 03:27:06] 2025-06-04 07:26:51,851 | INFO     | mean y: 2553077.475935829
[2025-06-04 03:27:06] 2025-06-04 07:26:51,851 | INFO     | -- intersect: 3315215180.1834683
[2025-06-04 03:27:06] 2025-06-04 07:26:51,851 | INFO     | intersect: 3315215180.1834683
[2025-06-04 03:27:06] 2025-06-04 07:26:51,867 | INFO     | chi2: 1.0480934778004947
[2025-06-04 03:27:06] 2025-06-04 07:26:51,868 | INFO     | current chi2=1.0480934778004947 (change=70.94298062577657 %)
[2025-06-04 03:27:06] 2025-06-04 07:26:51,868 | INFO     | sum of square deviations: 1869204050.2637362
[2025-06-04 03:27:06] 2025-06-04 07:26:51,869 | INFO     | sum of deviations: -16249364912.164837
[2025-06-04 03:27:06] 2025-06-04 07:26:51,901 | INFO     | mean x: 1749016418.7252748
[2025-06-04 03:27:06] 2025-06-04 07:26:51,901 | INFO     | mean y: 2565001.7967032967
[2025-06-04 03:27:06] 2025-06-04 07:26:51,901 | INFO     | -- intersect: 15207114778.598597
[2025-06-04 03:27:06] 2025-06-04 07:26:51,901 | INFO     | intersect: 15207114778.598597
[2025-06-04 03:27:06] 2025-06-04 07:26:51,942 | INFO     | chi2: 0.8892309775001613
[2025-06-04 03:27:06] 2025-06-04 07:26:51,942 | INFO     | current chi2=0.8892309775001613 (change=15.15728355010076 %)
[2025-06-04 03:27:06] 2025-06-04 07:26:51,942 | INFO     | left removable region: 20
[2025-06-04 03:27:06] 2025-06-04 07:26:51,952 | INFO     | sum of square deviations: 1418253497.3734941
[2025-06-04 03:27:06] 2025-06-04 07:26:51,953 | INFO     | sum of deviations: -7796604358.3975935
[2025-06-04 03:27:06] 2025-06-04 07:26:51,953 | INFO     | mean x: 1749016540.746988
[2025-06-04 03:27:06] 2025-06-04 07:26:51,953 | INFO     | mean y: 2582341.204819277
[2025-06-04 03:27:06] 2025-06-04 07:26:51,954 | INFO     | -- intersect: 9617499568.45022
[2025-06-04 03:27:06] 2025-06-04 07:26:51,954 | INFO     | intersect: 9617499568.45022
[2025-06-04 03:27:06] 2025-06-04 07:26:51,954 | INFO     | chi2: 0.013454785027938404
[2025-06-04 03:27:06] 2025-06-04 07:26:51,962 | INFO     | -- intersect: 9617499568.45022
[2025-06-04 03:27:06] 2025-06-04 07:26:51,962 | INFO     | current memory leak: -5.50 B/s (using 166 data points, chi2=0.01)
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | ..............................
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | . Timing measurements:
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | . get job = 0 s
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | . initial setup = 5 s
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | . payload setup = 45 s
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | . stage-in = 0 s
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | . payload execution = 11706 s
[2025-06-04 03:27:06] 2025-06-04 07:26:51,963 | INFO     | . stage-out = 2 s
[2025-06-04 03:27:06] 2025-06-04 07:26:51,964 | INFO     | . log creation = 0 s
[2025-06-04 03:27:06] 2025-06-04 07:26:51,964 | INFO     | ..............................
[2025-06-04 03:27:06] 2025-06-04 07:26:52,436 | INFO     | 
[2025-06-04 03:27:06] 2025-06-04 07:26:52,436 | INFO     | job summary report
[2025-06-04 03:27:06] 2025-06-04 07:26:52,439 | INFO     | --------------------------------------------------
[2025-06-04 03:27:06] 2025-06-04 07:26:52,439 | INFO     | PanDA job id: 6678155204
[2025-06-04 03:27:06] 2025-06-04 07:26:52,439 | INFO     | task id: 45006595
[2025-06-04 03:27:06] 2025-06-04 07:26:52,439 | INFO     | errors: (none)
[2025-06-04 03:27:06] 2025-06-04 07:26:52,439 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 03:27:06] 2025-06-04 07:26:52,439 | INFO     | pilot state: finished 
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | transexitcode: 0
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | exeerrorcode: 0
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | exeerrordiag: 
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | exitcode: 0
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | exitmsg: OK
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | cpuconsumptiontime: 46535 s
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | nevents: 400
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | neventsw: 0
[2025-06-04 03:27:06] 2025-06-04 07:26:52,445 | INFO     | pid: 12033
[2025-06-04 03:27:06] 2025-06-04 07:26:52,446 | INFO     | pgrp: 12033
[2025-06-04 03:27:06] 2025-06-04 07:26:52,446 | INFO     | corecount: 10
[2025-06-04 03:27:06] 2025-06-04 07:26:52,446 | INFO     | event service: False
[2025-06-04 03:27:06] 2025-06-04 07:26:52,446 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 22: 2405240, 32: 2405474, 33: 2405502, 11756: 2435126, 11757: 2435125, 11761: 2444122, 11762: 2444178, 11810: 2444348}
[2025-06-04 03:27:06] 2025-06-04 07:26:52,446 | INFO     | --------------------------------------------------
[2025-06-04 03:27:06] 2025-06-04 07:26:52,446 | INFO     | 
[2025-06-04 03:27:06] 2025-06-04 07:26:52,446 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 03:27:06] 2025-06-04 07:26:52,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,835 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 03:27:06] 2025-06-04 07:26:52,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,836 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 03:27:06] 2025-06-04 07:26:52,836 | INFO     | job 6678155204 has completed (purged errors)
[2025-06-04 03:27:06] 2025-06-04 07:26:52,836 | INFO     | overall cleanup function is called
[2025-06-04 03:27:06] 2025-06-04 07:26:52,857 | INFO     | PID=23297 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 03:27:06] 2025-06-04 07:26:52,857 | INFO     | .. there are 28 such processes running
[2025-06-04 03:27:06] 2025-06-04 07:26:53,862 | INFO     | --- collectZombieJob: --- 10, [12033]
[2025-06-04 03:27:06] 2025-06-04 07:26:53,863 | INFO     | zombie collector waiting for pid 12033
[2025-06-04 03:27:06] 2025-06-04 07:26:53,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 03:27:06] 2025-06-04 07:26:53,863 | INFO     | collected zombie processes
[2025-06-04 03:27:06] 2025-06-04 07:26:53,863 | INFO     | will attempt to kill all subprocesses of pid=12033
[2025-06-04 03:27:06] 2025-06-04 07:26:54,218 | INFO     | process IDs to be killed: [12033] (in reverse order)
[2025-06-04 03:27:06] 2025-06-04 07:26:54,353 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 03:27:06] 2025-06-04 07:26:54,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 03:27:06] 2025-06-04 07:26:54,364 | INFO     | did not find any defunct processes belonging to 12033
[2025-06-04 03:27:06] 2025-06-04 07:26:54,374 | INFO     | did not find any defunct processes belonging to 12033
[2025-06-04 03:27:06] 2025-06-04 07:26:54,374 | INFO     | ready for new job
[2025-06-04 03:27:06] 2025-06-04 07:26:54,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 03:27:06] 2025-06-04 07:26:54,376 | INFO     | **************************************
[2025-06-04 03:27:06] 2025-06-04 07:26:54,376 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 03:27:06] 2025-06-04 07:26:54,376 | INFO     | **************************************
[2025-06-04 03:27:06] 2025-06-04 07:26:54,376 | INFO     | 
[2025-06-04 03:27:06] 2025-06-04 07:26:54,389 | INFO     | architecture information:
[2025-06-04 03:27:06] 2025-06-04 07:26:54,408 | INFO     | executing command: cat /etc/os-release
[2025-06-04 03:27:06] 2025-06-04 07:26:54,571 | INFO     | cat /etc/os-release:
[2025-06-04 03:27:06] NAME="CentOS Linux"
[2025-06-04 03:27:06] VERSION="7 (Core)"
[2025-06-04 03:27:06] ID="centos"
[2025-06-04 03:27:06] ID_LIKE="rhel fedora"
[2025-06-04 03:27:06] VERSION_ID="7"
[2025-06-04 03:27:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 03:27:06] ANSI_COLOR="0;31"
[2025-06-04 03:27:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 03:27:06] HOME_URL="https://www.centos.org/"
[2025-06-04 03:27:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 03:27:06] 
[2025-06-04 03:27:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 03:27:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 03:27:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 03:27:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 03:27:06] 
[2025-06-04 03:27:06] 2025-06-04 07:26:54,572 | INFO     | **************************************
[2025-06-04 03:27:06] 2025-06-04 07:26:55,075 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 03:27:06] 2025-06-04 07:26:55,230 | INFO     | sufficient remaining disk space (57170460672 B)
[2025-06-04 03:27:06] 2025-06-04 07:26:55,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 03:27:06] 2025-06-04 07:26:55,230 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 03:27:06] 2025-06-04 07:26:55,230 | INFO     | update_server=False
[2025-06-04 03:27:06] 2025-06-04 07:26:55,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 03:27:06] 2025-06-04 07:26:55,231 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:27:06] 2025-06-04 07:26:55,231 | INFO     | aborting loop
[2025-06-04 03:27:06] 2025-06-04 07:26:55,231 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 03:27:06] 2025-06-04 07:26:55,231 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 03:27:06] 2025-06-04 07:26:55,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 03:27:06] 2025-06-04 07:26:55,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 03:27:06] 2025-06-04 07:26:55,616 | INFO     | all data control threads have been joined
[2025-06-04 03:27:06] 2025-06-04 07:26:55,617 | INFO     | all job control threads have been joined
[2025-06-04 03:27:06] 2025-06-04 07:26:55,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 03:27:06] 2025-06-04 07:26:56,238 | INFO     | [job] retrieve thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:56,238 | INFO     | [job] job monitor thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:56,271 | INFO     | [payload] validate_post thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:56,371 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:56,565 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 03:27:06] 2025-06-04 07:26:56,609 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:56,623 | INFO     | [data] control thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:56,632 | INFO     | [job] control thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:56,643 | INFO     | all payload control threads have been joined
[2025-06-04 03:27:06] 2025-06-04 07:26:57,042 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:57,150 | INFO     | [payload] failed_post thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:57,245 | INFO     | [job] validate thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:57,356 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:57,446 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 03:27:06] 2025-06-04 07:26:57,649 | INFO     | [payload] control thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:57,672 | INFO     | [data] copytool_in thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:58,452 | INFO     | [job] queue monitor thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:58,571 | INFO     | [data] copytool_out thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:26:59,956 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 03:27:06] 2025-06-04 07:27:00,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140259919939392)>', '<ExcThread(monitor, started 140259622885120)>']
[2025-06-04 03:27:06] 2025-06-04 07:27:01,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 03:27:06] 2025-06-04 07:27:01,273 | INFO     | [monitor] control thread has ended
[2025-06-04 03:27:06] 2025-06-04 07:27:05,316 | INFO     | all workflow threads have been joined
[2025-06-04 03:27:06] 2025-06-04 07:27:05,317 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 03:27:06] 2025-06-04 07:27:05,317 | INFO     | traces error code: 0
[2025-06-04 03:27:06] 2025-06-04 07:27:05,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 03:27:06] 2025-06-04 07:27:05,645 [wrapper] ==== pilot stdout END ====
[2025-06-04 03:27:06] 2025-06-04 07:27:05,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 03:27:06] 2025-06-04 07:27:05,684 [wrapper] pilotpid: 23297
[2025-06-04 03:27:06] 2025-06-04 07:27:05,687 [wrapper] Pilot exit status: 0
[2025-06-04 03:27:06] 2025-06-04 07:27:05,704 [wrapper] pandaids: 6678155204
[2025-06-04 03:27:06] 2025-06-04 07:27:05,790 [wrapper] cleanup supervisor_pilot 12170 23298
[2025-06-04 03:27:06] 2025-06-04 07:27:05,800 [wrapper] Test setup, not cleaning
[2025-06-04 03:27:06] 2025-06-04 07:27:05,803 [wrapper] apfmon messages muted
[2025-06-04 03:27:06] 2025-06-04 07:27:05,807 [wrapper] ==== wrapper stdout END ====
[2025-06-04 03:27:06] 2025-06-04 07:27:05,835 [wrapper] ==== wrapper stderr END ====
[2025-06-04 03:27:06]  *** Error codes and diagnostics ***
[2025-06-04 03:27:06]     "exeErrorCode": 0,
[2025-06-04 03:27:06]     "exeErrorDiag": "",
[2025-06-04 03:27:06]     "pilotErrorCode": 0,
[2025-06-04 03:27:06]     "pilotErrorDiag": "",
[2025-06-04 03:27:06]  *** Listing of results directory ***
[2025-06-04 03:27:06] total 394228
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 18:42 pilot3.tar.gz
[2025-06-04 03:27:06] -rwx------ 1 boincer umatlas     37140 Jun  3 19:19 runpilot2-wrapper.sh
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 19:19 queuedata.json
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas       100 Jun  4 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 03:27:06] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 00:07 run_atlas
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas       105 Jun  4 00:07 job.xml
[2025-06-04 03:27:06] -rw-r--r-- 2 boincer umatlas 217423943 Jun  4 00:07 EVNT.45006593._001922.pool.root.1
[2025-06-04 03:27:06] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 00:07 start_atlas.sh
[2025-06-04 03:27:06] drwxrwx--x 2 boincer umatlas      4096 Jun  4 00:07 shared
[2025-06-04 03:27:06] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 00:07 input.tar.gz
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas         0 Jun  4 00:07 boinc_lockfile
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 00:08 pandaJob.out
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas    986077 Jun  4 00:09 agis_schedconf.cvmfs.json
[2025-06-04 03:27:06] drwx------ 4 boincer umatlas      4096 Jun  4 00:09 pilot3
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas      6229 Jun  4 03:22 init_data.xml
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas 179540283 Jun  4 03:24 HITS.45006595._047872.pool.root.1
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas       530 Jun  4 03:25 boinc_task_state.xml
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas      1061 Jun  4 03:25 memory_monitor_summary.json
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas   1603667 Jun  4 03:26 agis_ddmendpoints.agis.ALL.json
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas    405904 Jun  4 03:26 log.45006595._047872.job.log.tgz.1
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas        95 Jun  4 03:26 pilot_heartbeat.json
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas      7760 Jun  4 03:26 heartbeat.json
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 03:26 boinc_mmap_file
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas        28 Jun  4 03:26 wrapper_checkpoint.txt
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas      4476 Jun  4 03:27 pilotlog.txt
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas   1035924 Jun  4 03:27 log.45006595._047872.job.log.1
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas       357 Jun  4 03:27 output.list
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas       620 Jun  4 03:27 runtime_log
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas   1464320 Jun  4 03:27 result.tar.gz
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas      8662 Jun  4 03:27 runtime_log.err
[2025-06-04 03:27:06] -rw------- 1 boincer umatlas       662 Jun  4 03:27 n2rKDmZ5pg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPEaKDmoWbxKn.diag
[2025-06-04 03:27:06] -rw-r--r-- 1 boincer umatlas     21285 Jun  4 03:27 stderr.txt
[2025-06-04 03:27:07] HITS file was successfully produced:
[2025-06-04 03:27:07] -rw------- 1 boincer umatlas 179540283 Jun  4 03:24 shared/HITS.pool.root.1
[2025-06-04 03:27:07]  *** Contents of shared directory: ***
[2025-06-04 03:27:07] total 389620
[2025-06-04 03:27:07] -rw-r--r-- 2 boincer umatlas 217423943 Jun  4 00:07 ATLAS.root_0
[2025-06-04 03:27:07] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 00:07 start_atlas.sh
[2025-06-04 03:27:07] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 00:07 input.tar.gz
[2025-06-04 03:27:07] -rw------- 1 boincer umatlas 179540283 Jun  4 03:24 HITS.pool.root.1
[2025-06-04 03:27:07] -rw------- 1 boincer umatlas   1464320 Jun  4 03:27 result.tar.gz
03:27:08 (7710): run_atlas exited; CPU time 46785.828500
03:27:08 (7710): called boinc_finish(0)

</stderr_txt>
]]>

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