Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:10:06 (108064): wrapper (7.7.26015): starting
21:10:06 (108064): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 21:10:06] Arguments: --nthreads 12
[2025-06-03 21:10:06] Threads: 12
[2025-06-03 21:10:06] Checking for CVMFS
[2025-06-03 21:10:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:10:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:10:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:10:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:10:07] 2.11.5.0 4082278 23143 338648 146767 0 584 31720728 45568001 14330 130560 0 235539134 99.782 163886654 32310 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-03 21:10:07] CVMFS is ok
[2025-06-03 21:10:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:10:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:10:07] Further information can be found at the LHC@home message board.
[2025-06-03 21:10:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:10:07] Checking for apptainer binary...
[2025-06-03 21:10:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:10:07] Running /usr/bin/apptainer --version
[2025-06-03 21:10:07] apptainer version 1.4.0-1.el9
[2025-06-03 21:10:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:10:08] wns0084.triumf.lcg
[2025-06-03 21:10:08] apptainer works
[2025-06-03 21:10:08] Set ATHENA_PROC_NUMBER=12
[2025-06-03 21:10:08] Set ATHENA_CORE_NUMBER=12
[2025-06-03 21:10:08] Starting ATLAS job with PandaID=6678246331
[2025-06-03 21:10:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:14:17]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | wrong length of table data, x=[1749010284.0], y=[992.0] (must be same and length>=4)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | INFO     | ..............................
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | INFO     | . Timing measurements:
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . get job = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . initial setup = 3 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . payload setup = 11 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . stage-in = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . payload execution = 36 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . stage-out = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . log creation = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | ..............................
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678246331/pilotlog.txt
[2025-06-03 21:14:17] 2025-06-04 04:13:59,545 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 21:14:17] - Log from pilotlog.txt -
[2025-06-03 21:14:17] 2025-06-04 04:13:59,412 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6678246331/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | INFO     | extracted standard info from prmon json
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | wrong length of table data, x=[1749010284.0], y=[992.0] (must be same and length>=4)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | INFO     | ..............................
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | INFO     | . Timing measurements:
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . get job = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . initial setup = 3 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . payload setup = 11 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . stage-in = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . payload execution = 36 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . stage-out = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . log creation = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | ..............................
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678246331/pilotlog.txt
[2025-06-03 21:14:17] 2025-06-04 04:13:59,546 | WARNING  | 
[2025-06-03 21:14:17] [begin log extracts]
[2025-06-03 21:14:17] - Log from pilotlog.txt -
[2025-06-03 21:14:17] 2025-06-04 04:13:59,412 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6678246331/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | INFO     | extracted standard info from prmon json
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:14:17] 2025-06-04 04:13:59,413 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | WARNING  | wrong length of table data, x=[1749010284.0], y=[992.0] (must be same and length>=4)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | INFO     | ..............................
[2025-06-03 21:14:17] 2025-06-04 04:13:59,414 | INFO     | . Timing measurements:
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . get job = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . initial setup = 3 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . payload setup = 11 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . stage-in = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . payload execution = 36 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . stage-out = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | . log creation = 0 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | ..............................
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 21:14:17] 2025-06-04 04:13:59,415 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678246331/pilotlog.txt
[2025-06-03 21:14:17] [end log extracts]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,546 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,547 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 21:14:17] 2025-06-04 04:13:59,827 | INFO     | 
[2025-06-03 21:14:17] 2025-06-04 04:13:59,827 | INFO     | job summary report
[2025-06-03 21:14:17] 2025-06-04 04:13:59,827 | INFO     | --------------------------------------------------
[2025-06-03 21:14:17] 2025-06-04 04:13:59,827 | INFO     | PanDA job id: 6678246331
[2025-06-03 21:14:17] 2025-06-04 04:13:59,827 | INFO     | task id: 45006595
[2025-06-03 21:14:17] 2025-06-04 04:13:59,827 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 21:11:40,452 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 21:14:17] 2025-06-04 04:13:59,827 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | pilot state: failed 
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | transexitcode: 65
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | exeerrorcode: 65
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | exitcode: 65
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | cpuconsumptiontime: 16 s
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | nevents: 0
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | neventsw: 0
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | pid: 129307
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | pgrp: 129307
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | corecount: 12
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | event service: False
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | sizes: {0: 2404356, 1: 2405209, 12: 2405209, 15: 2405443, 23: 2405471, 52: 2428807, 54: 2433042, 57: 2433070, 184: 2433212}
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | --------------------------------------------------
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | 
[2025-06-03 21:14:17] 2025-06-04 04:13:59,828 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 21:14:17] 2025-06-04 04:13:59,909 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,911 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,911 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,911 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:14:17] 2025-06-04 04:13:59,911 | INFO     | job 6678246331 has completed (purged errors)
[2025-06-03 21:14:17] 2025-06-04 04:13:59,911 | INFO     | overall cleanup function is called
[2025-06-03 21:14:17] 2025-06-04 04:14:00,924 | INFO     | --- collectZombieJob: --- 10, [129307]
[2025-06-03 21:14:17] 2025-06-04 04:14:00,924 | INFO     | zombie collector waiting for pid 129307
[2025-06-03 21:14:17] 2025-06-04 04:14:00,924 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:14:17] 2025-06-04 04:14:00,924 | INFO     | collected zombie processes
[2025-06-03 21:14:17] 2025-06-04 04:14:00,924 | INFO     | will attempt to kill all subprocesses of pid=129307
[2025-06-03 21:14:17] 2025-06-04 04:14:01,569 | INFO     | process IDs to be killed: [129307] (in reverse order)
[2025-06-03 21:14:17] 2025-06-04 04:14:01,799 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:14:17] 2025-06-04 04:14:01,800 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:14:17] 2025-06-04 04:14:01,812 | INFO     | did not find any defunct processes belonging to 129307
[2025-06-03 21:14:17] 2025-06-04 04:14:01,820 | INFO     | did not find any defunct processes belonging to 129307
[2025-06-03 21:14:17] 2025-06-04 04:14:01,821 | INFO     | ready for new job
[2025-06-03 21:14:17] 2025-06-04 04:14:01,821 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:14:17] 2025-06-04 04:14:01,822 | INFO     | **************************************
[2025-06-03 21:14:17] 2025-06-04 04:14:01,822 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:14:17] 2025-06-04 04:14:01,822 | INFO     | **************************************
[2025-06-03 21:14:17] 2025-06-04 04:14:01,822 | INFO     | 
[2025-06-03 21:14:17] 2025-06-04 04:14:01,824 | INFO     | architecture information:
[2025-06-03 21:14:17] 2025-06-04 04:14:01,824 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:14:17] 2025-06-04 04:14:01,839 | INFO     | cat /etc/os-release:
[2025-06-03 21:14:17] NAME="CentOS Linux"
[2025-06-03 21:14:17] VERSION="7 (Core)"
[2025-06-03 21:14:17] ID="centos"
[2025-06-03 21:14:17] ID_LIKE="rhel fedora"
[2025-06-03 21:14:17] VERSION_ID="7"
[2025-06-03 21:14:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:14:17] ANSI_COLOR="0;31"
[2025-06-03 21:14:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:14:17] HOME_URL="https://www.centos.org/"
[2025-06-03 21:14:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:14:17] 
[2025-06-03 21:14:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:14:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:14:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:14:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:14:17] 
[2025-06-03 21:14:17] 2025-06-04 04:14:01,839 | INFO     | **************************************
[2025-06-03 21:14:17] 2025-06-04 04:14:02,343 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 21:14:17] 2025-06-04 04:14:02,408 | INFO     | sufficient remaining disk space (1957102092288 B)
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | INFO     | update_server=False
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:14:17] 2025-06-04 04:14:02,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:14:17] 2025-06-04 04:14:02,639 | INFO     | all data control threads have been joined
[2025-06-03 21:14:17] 2025-06-04 04:14:02,755 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 21:14:17] 2025-06-04 04:14:02,755 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 21:14:17] 2025-06-04 04:14:02,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:14:17] 2025-06-04 04:14:02,755 | INFO     | will abort loop
[2025-06-03 21:14:17] 2025-06-04 04:14:02,880 | INFO     | all job control threads have been joined
[2025-06-03 21:14:17] 2025-06-04 04:14:03,184 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:14:17] 2025-06-04 04:14:03,417 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:03,645 | INFO     | [data] control thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:03,738 | INFO     | [job] validate thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:03,761 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:03,817 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:03,886 | INFO     | [job] control thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:03,897 | INFO     | all payload control threads have been joined
[2025-06-03 21:14:17] 2025-06-04 04:14:03,944 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:04,120 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:04,219 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:04,549 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:04,598 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:04,758 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:04,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:14:17] 2025-06-04 04:14:04,903 | INFO     | [payload] control thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:05,193 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:05,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:14:17] 2025-06-04 04:14:05,848 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:09,714 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:14:17] 2025-06-04 04:14:10,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677386835776)>', '<ExcThread(monitor, started 140676989695744)>']
[2025-06-03 21:14:17] 2025-06-04 04:14:11,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:14:17] 2025-06-04 04:14:11,465 | INFO     | [monitor] control thread has ended
[2025-06-03 21:14:17] 2025-06-04 04:14:15,785 | INFO     | all workflow threads have been joined
[2025-06-03 21:14:17] 2025-06-04 04:14:15,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:14:17] 2025-06-04 04:14:15,786 | INFO     | traces error code: 0
[2025-06-03 21:14:17] 2025-06-04 04:14:15,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:14:17] 2025-06-04 04:14:15,979 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:14:17] 2025-06-04 04:14:15,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:14:17] 2025-06-04 04:14:15,994 [wrapper] pilotpid: 114145
[2025-06-03 21:14:17] 2025-06-04 04:14:15,998 [wrapper] Pilot exit status: 0
[2025-06-03 21:14:17] 2025-06-04 04:14:16,056 [wrapper] pandaids: 6678246331
[2025-06-03 21:14:17] 2025-06-04 04:14:16,308 [wrapper] cleanup supervisor_pilot  114171 114146
[2025-06-03 21:14:17] 2025-06-04 04:14:16,376 [wrapper] Test setup, not cleaning
[2025-06-03 21:14:17] 2025-06-04 04:14:16,397 [wrapper] apfmon messages muted
[2025-06-03 21:14:17] 2025-06-04 04:14:16,429 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:14:17] 2025-06-04 04:14:16,470 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:14:17]  *** Error codes and diagnostics ***
[2025-06-03 21:14:17]     "exeErrorCode": 65,
[2025-06-03 21:14:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 21:14:17]     "pilotErrorCode": 1305,
[2025-06-03 21:14:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 21:14:17]  *** Listing of results directory ***
[2025-06-03 21:14:17] total 215952
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc    495897 Jun  3 18:59 pilot3.tar.gz
[2025-06-03 21:14:17] -rwx------. 1 boinc boinc     37140 Jun  3 19:02 runpilot2-wrapper.sh
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc      5111 Jun  3 19:02 queuedata.json
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc       100 Jun  3 21:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:14:17] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 21:10 run_atlas
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc       105 Jun  3 21:10 job.xml
[2025-06-03 21:14:17] -rw-r--r--. 2 boinc boinc 217111603 Jun  3 21:10 EVNT.45006593._002006.pool.root.1
[2025-06-03 21:14:17] -rw-r--r--. 2 boinc boinc    508871 Jun  3 21:10 input.tar.gz
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc      6601 Jun  3 21:10 init_data.xml
[2025-06-03 21:14:17] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:10 start_atlas.sh
[2025-06-03 21:14:17] drwxrwx--x. 2 boinc boinc      4096 Jun  3 21:10 shared
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc         0 Jun  3 21:10 boinc_lockfile
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc      2525 Jun  3 21:10 pandaJob.out
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc    986077 Jun  3 21:10 agis_schedconf.cvmfs.json
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc   1603667 Jun  3 21:10 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:14:17] drwx------. 4 boinc boinc      4096 Jun  3 21:10 pilot3
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc       523 Jun  3 21:11 boinc_task_state.xml
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc       961 Jun  3 21:11 memory_monitor_summary.json
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc     20837 Jun  3 21:11 log.45006595._050038.job.log.tgz.1
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc        95 Jun  3 21:13 pilot_heartbeat.json
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc      8333 Jun  3 21:13 heartbeat.json
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc      8192 Jun  3 21:14 boinc_mmap_file
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc        22 Jun  3 21:14 wrapper_checkpoint.txt
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc      4661 Jun  3 21:14 pilotlog.txt
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc     76849 Jun  3 21:14 log.45006595._050038.job.log.1
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc       188 Jun  3 21:14 output.list
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc       620 Jun  3 21:14 runtime_log
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc    112640 Jun  3 21:14 result.tar.gz
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc      8484 Jun  3 21:14 runtime_log.err
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc       645 Jun  3 21:14 88LNDmTdsg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBUaKDmPEjJRm.diag
[2025-06-03 21:14:17] -rw-r--r--. 1 boinc boinc     21661 Jun  3 21:14 stderr.txt
[2025-06-03 21:14:17] No HITS result produced
[2025-06-03 21:14:17]  *** Contents of shared directory: ***
[2025-06-03 21:14:17] total 212652
[2025-06-03 21:14:17] -rw-r--r--. 2 boinc boinc 217111603 Jun  3 21:10 ATLAS.root_0
[2025-06-03 21:14:17] -rw-r--r--. 2 boinc boinc    508871 Jun  3 21:10 input.tar.gz
[2025-06-03 21:14:17] -rw-r--r--. 2 boinc boinc     15093 Jun  3 21:10 start_atlas.sh
[2025-06-03 21:14:17] -rw-------. 1 boinc boinc    112640 Jun  3 21:14 result.tar.gz
21:14:19 (108064): run_atlas exited; CPU time 23.593108
21:14:19 (108064): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN