Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:40:29 (1190996): wrapper (7.7.26015): starting
14:40:29 (1190996): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 14:40:29] Arguments: --nthreads 3
[2025-06-04 14:40:29] Threads: 3
[2025-06-04 14:40:29] Checking for CVMFS
[2025-06-04 14:40:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:40:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:40:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:40:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:40:30] 2.9.2.0 350883 2470 83196 146780 1 56 31469444 36864001 0 130560 0 2267314 99.992 601268 40383 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 14:40:30] CVMFS is ok
[2025-06-04 14:40:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 14:40:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 14:40:30] Further information can be found at the LHC@home message board.
[2025-06-04 14:40:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:40:30] Checking for apptainer binary...
[2025-06-04 14:40:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:40:30] Running /usr/bin/apptainer --version
[2025-06-04 14:40:30] apptainer version 1.3.6-6.1
[2025-06-04 14:40:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:40:30] thA335a
[2025-06-04 14:40:30] apptainer works
[2025-06-04 14:40:30] Set ATHENA_PROC_NUMBER=3
[2025-06-04 14:40:30] Set ATHENA_CORE_NUMBER=3
[2025-06-04 14:40:30] Starting ATLAS job with PandaID=6666949734
[2025-06-04 14:40:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:20:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:20:12]  filetype=log
[2025-06-04 16:20:12]  guid=b769c77c-d08a-4be8-b0d4-53f807eda9cd
[2025-06-04 16:20:12]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 16:20:12]  is_altstaged=None
[2025-06-04 16:20:12]  is_tar=False
[2025-06-04 16:20:12]  lfn=log.44871837._067167.job.log.tgz.1
[2025-06-04 16:20:12]  mtime=0
[2025-06-04 16:20:12]  protocol_id=None
[2025-06-04 16:20:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 16:20:12]  replicas=None
[2025-06-04 16:20:12]  scope=mc23_13p6TeV
[2025-06-04 16:20:12]  status=None
[2025-06-04 16:20:12]  status_code=0
[2025-06-04 16:20:12]  storage_token=
[2025-06-04 16:20:12]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6666949734/log.44871837._067167.job.log.tgz.1
[2025-06-04 16:20:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/47/log.44871837._067167.job.log.tgz.1
[2025-06-04 16:20:12]  workdir=None
[2025-06-04 16:20:12] ]
[2025-06-04 16:20:12] 2025-06-04 14:19:48,989 | INFO     | transferring file log.44871837._067167.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6666949734/log.44871837._067167.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 16:20:12] 2025-06-04 14:19:48,989 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6666949734/log.44871837._067167.job.log.tgz.1 /local/data/boinc/slots/0/log.44871837._0671
[2025-06-04 16:20:12] 2025-06-04 14:19:49,002 | INFO     | adding to output.list: log.44871837._067167.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/47/log.44871837._067167.job.log.tg
[2025-06-04 16:20:12] 2025-06-04 14:19:49,003 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 16:20:12] 2025-06-04 14:19:49,003 | INFO     | summary of transferred files:
[2025-06-04 16:20:12] 2025-06-04 14:19:49,003 | INFO     |  -- lfn=log.44871837._067167.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 16:20:12] 2025-06-04 14:19:49,003 | INFO     | stage-out finished correctly
[2025-06-04 16:20:12] 2025-06-04 14:19:50,699 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 16:20:12] 2025-06-04 14:19:50,730 | INFO     | job 6666949734 has state=finished
[2025-06-04 16:20:12] 2025-06-04 14:19:50,730 | INFO     | preparing for final server update for job 6666949734 in state='finished'
[2025-06-04 16:20:12] 2025-06-04 14:19:50,731 | INFO     | this job has now completed (state=finished)
[2025-06-04 16:20:12] 2025-06-04 14:19:50,731 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 16:20:12] 2025-06-04 14:19:50,731 | INFO     | log transfer has been attempted: DONE
[2025-06-04 16:20:12] 2025-06-04 14:19:50,731 | INFO     | job 6666949734 has finished - writing final server update
[2025-06-04 16:20:12] 2025-06-04 14:19:50,731 | INFO     | total number of processed events: 400 (read)
[2025-06-04 16:20:12] 2025-06-04 14:19:50,732 | INFO     | executing command: lscpu
[2025-06-04 16:20:12] 2025-06-04 14:19:50,746 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 16:20:12] 2025-06-04 14:19:51,389 | WARNING  | process 1201131 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 16:20:12] 2025-06-04 14:19:51,389 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6666949734/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:20:12] 2025-06-04 14:19:51,426 | INFO     | number of running child processes to parent process 1201131: 1
[2025-06-04 16:20:12] 2025-06-04 14:19:51,426 | INFO     | maximum number of monitored processes: 6
[2025-06-04 16:20:12] 2025-06-04 14:19:53,160 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 16:20:12] 2025-06-04 14:19:53,160 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6666949734/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:20:12] 2025-06-04 14:19:53,160 | INFO     | extracted standard info from prmon json
[2025-06-04 16:20:12] 2025-06-04 14:19:53,160 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:20:12] 2025-06-04 14:19:53,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:20:12] 2025-06-04 14:19:53,160 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:20:12] 2025-06-04 14:19:53,160 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:20:12] 2025-06-04 14:19:53,161 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:20:12] 2025-06-04 14:19:53,161 | INFO     | sum of square deviations: 233641590.0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | sum of deviations: -16461696741.0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | mean x: 1749043906.0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | mean y: 2480577.769230769
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | -- intersect: 123234951163.44754
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | intersect: 123234951163.44754
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | chi2: 0.09098808496460636
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | -- intersect: 123234951163.44754
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | current memory leak: -70.46 B/s (using 91 data points, chi2=0.09)
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | ..............................
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . Timing measurements:
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . get job = 0 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . initial setup = 1 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . payload setup = 3 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . stage-in = 0 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . payload execution = 5932 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . stage-out = 0 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | . log creation = 0 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,162 | INFO     | ..............................
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | 
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | job summary report
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | --------------------------------------------------
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | PanDA job id: 6666949734
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | task id: 44871837
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | errors: (none)
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | pilot state: finished 
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | transexitcode: 0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | exeerrorcode: 0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | exeerrordiag: 
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | exitcode: 0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,682 | INFO     | exitmsg: OK
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | cpuconsumptiontime: 17187 s
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | nevents: 400
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | neventsw: 0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | pid: 1201131
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | pgrp: 1201131
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | corecount: 3
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | event service: False
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | sizes: {0: 2397395, 3: 2397601, 11: 2397629, 5940: 2433344, 5942: 2433344, 5944: 2433514}
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | --------------------------------------------------
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | 
[2025-06-04 16:20:12] 2025-06-04 14:19:53,683 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 16:20:12] 2025-06-04 14:19:53,698 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,698 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,698 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | job 6666949734 has completed (purged errors)
[2025-06-04 16:20:12] 2025-06-04 14:19:53,699 | INFO     | overall cleanup function is called
[2025-06-04 16:20:12] 2025-06-04 14:19:54,706 | INFO     | --- collectZombieJob: --- 10, [1201131]
[2025-06-04 16:20:12] 2025-06-04 14:19:54,706 | INFO     | zombie collector waiting for pid 1201131
[2025-06-04 16:20:12] 2025-06-04 14:19:54,707 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:20:12] 2025-06-04 14:19:54,707 | INFO     | collected zombie processes
[2025-06-04 16:20:12] 2025-06-04 14:19:54,707 | INFO     | will attempt to kill all subprocesses of pid=1201131
[2025-06-04 16:20:12] 2025-06-04 14:19:54,748 | INFO     | process IDs to be killed: [1201131] (in reverse order)
[2025-06-04 16:20:12] 2025-06-04 14:19:54,773 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:20:12] 2025-06-04 14:19:54,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:20:12] 2025-06-04 14:19:54,775 | INFO     | did not find any defunct processes belonging to 1201131
[2025-06-04 16:20:12] 2025-06-04 14:19:54,776 | INFO     | did not find any defunct processes belonging to 1201131
[2025-06-04 16:20:12] 2025-06-04 14:19:54,776 | INFO     | ready for new job
[2025-06-04 16:20:12] 2025-06-04 14:19:54,776 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:20:12] 2025-06-04 14:19:54,776 | INFO     | **************************************
[2025-06-04 16:20:12] 2025-06-04 14:19:54,776 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:20:12] 2025-06-04 14:19:54,776 | INFO     | **************************************
[2025-06-04 16:20:12] 2025-06-04 14:19:54,776 | INFO     | 
[2025-06-04 16:20:12] 2025-06-04 14:19:54,777 | INFO     | architecture information:
[2025-06-04 16:20:12] 2025-06-04 14:19:54,777 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:20:12] 2025-06-04 14:19:54,787 | INFO     | cat /etc/os-release:
[2025-06-04 16:20:12] NAME="CentOS Linux"
[2025-06-04 16:20:12] VERSION="7 (Core)"
[2025-06-04 16:20:12] ID="centos"
[2025-06-04 16:20:12] ID_LIKE="rhel fedora"
[2025-06-04 16:20:12] VERSION_ID="7"
[2025-06-04 16:20:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:20:12] ANSI_COLOR="0;31"
[2025-06-04 16:20:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:20:12] HOME_URL="https://www.centos.org/"
[2025-06-04 16:20:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:20:12] 
[2025-06-04 16:20:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:20:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:20:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:20:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:20:12] 
[2025-06-04 16:20:12] 2025-06-04 14:19:54,787 | INFO     | **************************************
[2025-06-04 16:20:12] 2025-06-04 14:19:55,290 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 16:20:12] 2025-06-04 14:19:55,303 | INFO     | sufficient remaining disk space (368816685056 B)
[2025-06-04 16:20:12] 2025-06-04 14:19:55,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | INFO     | update_server=False
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | INFO     | aborting loop
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:20:12] 2025-06-04 14:19:55,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:20:12] 2025-06-04 14:19:55,525 | INFO     | all job control threads have been joined
[2025-06-04 16:20:12] 2025-06-04 14:19:55,841 | INFO     | all data control threads have been joined
[2025-06-04 16:20:12] 2025-06-04 14:19:56,309 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:56,310 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:56,460 | INFO     | all payload control threads have been joined
[2025-06-04 16:20:12] 2025-06-04 14:19:56,526 | INFO     | [job] control thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:56,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:20:12] 2025-06-04 14:19:56,740 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:56,846 | INFO     | [data] control thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,207 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,310 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,433 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,466 | INFO     | [payload] control thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,740 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,761 | INFO     | [job] validate thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,803 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:57,804 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:19:58,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:20:12] 2025-06-04 14:19:59,207 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:20:00,744 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:20:05,743 | INFO     | job.realtimelogging is not enabled
[2025-06-04 16:20:12] 2025-06-04 14:20:06,749 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:20:12] 2025-06-04 14:20:07,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140577221240640)>', '<ExcThread(monitor, started 140576359970560)>']
[2025-06-04 16:20:12] 2025-06-04 14:20:08,371 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:20:12] 2025-06-04 14:20:08,371 | INFO     | [monitor] control thread has ended
[2025-06-04 16:20:12] 2025-06-04 14:20:12,744 | INFO     | all workflow threads have been joined
[2025-06-04 16:20:12] 2025-06-04 14:20:12,745 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:20:12] 2025-06-04 14:20:12,745 | INFO     | traces error code: 0
[2025-06-04 16:20:12] 2025-06-04 14:20:12,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:20:12] 2025-06-04 14:20:12,795 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:20:12] 2025-06-04 14:20:12,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:20:12] 2025-06-04 14:20:12,800 [wrapper] pilotpid: 1194629
[2025-06-04 16:20:12] 2025-06-04 14:20:12,803 [wrapper] Pilot exit status: 0
[2025-06-04 16:20:12] 2025-06-04 14:20:12,811 [wrapper] pandaids: 6666949734
[2025-06-04 16:20:12] 2025-06-04 14:20:12,828 [wrapper] cleanup supervisor_pilot 1213164 1194630
[2025-06-04 16:20:12] 2025-06-04 14:20:12,830 [wrapper] Test setup, not cleaning
[2025-06-04 16:20:12] 2025-06-04 14:20:12,833 [wrapper] apfmon messages muted
[2025-06-04 16:20:12] 2025-06-04 14:20:12,836 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:20:12] 2025-06-04 14:20:12,838 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:20:12]  *** Error codes and diagnostics ***
[2025-06-04 16:20:12]     "exeErrorCode": 0,
[2025-06-04 16:20:12]     "exeErrorDiag": "",
[2025-06-04 16:20:12]     "pilotErrorCode": 0,
[2025-06-04 16:20:12]     "pilotErrorDiag": "",
[2025-06-04 16:20:12]  *** Listing of results directory ***
[2025-06-04 16:20:12] total 406844
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc    495897 May 27 13:59 pilot3.tar.gz
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc      5111 May 27 14:08 queuedata.json
[2025-06-04 16:20:12] -rwx------ 1 boinc boinc     37140 May 27 14:10 runpilot2-wrapper.sh
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc       100 Jun  4 14:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:20:12] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 14:40 run_atlas
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc       105 Jun  4 14:40 job.xml
[2025-06-04 16:20:12] -rw-r--r-- 2 boinc boinc 221797252 Jun  4 14:40 EVNT.44871834._002645.pool.root.1
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc      6930 Jun  4 14:40 init_data.xml
[2025-06-04 16:20:12] drwxrwx--x 2 boinc boinc      4096 Jun  4 14:40 shared
[2025-06-04 16:20:12] -rw-r--r-- 2 boinc boinc    508879 Jun  4 14:40 input.tar.gz
[2025-06-04 16:20:12] -rw-r--r-- 2 boinc boinc     15093 Jun  4 14:40 start_atlas.sh
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc         0 Jun  4 14:40 boinc_lockfile
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc      2559 Jun  4 14:40 pandaJob.out
[2025-06-04 16:20:12] -rw------- 1 boinc boinc    986811 Jun  4 14:40 agis_schedconf.cvmfs.json
[2025-06-04 16:20:12] -rw------- 1 boinc boinc   1598969 Jun  4 14:40 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:20:12] drwx------ 4 boinc boinc      4096 Jun  4 14:40 pilot3
[2025-06-04 16:20:12] -rw------- 1 boinc boinc        95 Jun  4 16:19 pilot_heartbeat.json
[2025-06-04 16:20:12] -rw------- 1 boinc boinc 189378890 Jun  4 16:19 HITS.44871837._067167.pool.root.1
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc       530 Jun  4 16:19 boinc_task_state.xml
[2025-06-04 16:20:12] -rw------- 1 boinc boinc      1017 Jun  4 16:19 memory_monitor_summary.json
[2025-06-04 16:20:12] -rw------- 1 boinc boinc    231111 Jun  4 16:19 log.44871837._067167.job.log.tgz.1
[2025-06-04 16:20:12] -rw------- 1 boinc boinc      7655 Jun  4 16:19 heartbeat.json
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc      8192 Jun  4 16:20 boinc_mmap_file
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc        27 Jun  4 16:20 wrapper_checkpoint.txt
[2025-06-04 16:20:12] -rw------- 1 boinc boinc      4552 Jun  4 16:20 pilotlog.txt
[2025-06-04 16:20:12] -rw------- 1 boinc boinc    569119 Jun  4 16:20 log.44871837._067167.job.log.1
[2025-06-04 16:20:12] -rw------- 1 boinc boinc       357 Jun  4 16:20 output.list
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc       620 Jun  4 16:20 runtime_log
[2025-06-04 16:20:12] -rw------- 1 boinc boinc    819200 Jun  4 16:20 result.tar.gz
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc      8738 Jun  4 16:20 runtime_log.err
[2025-06-04 16:20:12] -rw------- 1 boinc boinc       659 Jun  4 16:20 rFFKDmsJ8d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFNZKDml9n1nn.diag
[2025-06-04 16:20:12] -rw-r--r-- 1 boinc boinc     21183 Jun  4 16:20 stderr.txt
[2025-06-04 16:20:12] HITS file was successfully produced:
[2025-06-04 16:20:12] -rw------- 1 boinc boinc 189378890 Jun  4 16:19 shared/HITS.pool.root.1
[2025-06-04 16:20:12]  *** Contents of shared directory: ***
[2025-06-04 16:20:12] total 402868
[2025-06-04 16:20:12] -rw-r--r-- 2 boinc boinc 221797252 Jun  4 14:40 ATLAS.root_0
[2025-06-04 16:20:12] -rw-r--r-- 2 boinc boinc    508879 Jun  4 14:40 input.tar.gz
[2025-06-04 16:20:12] -rw-r--r-- 2 boinc boinc     15093 Jun  4 14:40 start_atlas.sh
[2025-06-04 16:20:12] -rw------- 1 boinc boinc 189378890 Jun  4 16:19 HITS.pool.root.1
[2025-06-04 16:20:12] -rw------- 1 boinc boinc    819200 Jun  4 16:20 result.tar.gz
16:20:14 (1190996): run_atlas exited; CPU time 17205.444102
16:20:14 (1190996): called boinc_finish(0)

</stderr_txt>
]]>

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