Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:31:35 (25048): wrapper (7.7.26015): starting
17:31:35 (25048): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 17:31:35] Arguments: --nthreads 8
[2025-06-04 17:31:35] Threads: 8
[2025-06-04 17:31:35] Checking for CVMFS
[2025-06-04 17:31:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 17:31:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 17:31:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 17:31:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 17:31:35] 2.11.2.0 2201 33379 90396 146786 1 159 23206885 25165824 4019 130560 0 17065409 99.795 19454349 2210 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 17:31:35] CVMFS is ok
[2025-06-04 17:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:31:35] Checking for apptainer binary...
[2025-06-04 17:31:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 17:31:35] Running /usr/bin/apptainer --version
[2025-06-04 17:31:35] apptainer version 1.3.2-1.el7
[2025-06-04 17:31:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:31:37] cg-vwn381.simple-grid.lan
[2025-06-04 17:31:37] apptainer works
[2025-06-04 17:31:37] Set ATHENA_PROC_NUMBER=8
[2025-06-04 17:31:37] Set ATHENA_CORE_NUMBER=8
[2025-06-04 17:31:37] Starting ATLAS job with PandaID=6677919838
[2025-06-04 17:31:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 23:41:27]  *** The last 200 lines of the pilot log: ***
[2025-06-04 23:41:27] 2025-06-04 19:07:21,618 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 23:41:27] 2025-06-04 19:07:21,618 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 23:41:27] 2025-06-04 19:07:21,618 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 23:41:27] 2025-06-04 19:07:21,618 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 23:41:27] 2025-06-04 19:07:21,623 | INFO     | fitting pss+swap vs Time
[2025-06-04 23:41:27] 2025-06-04 19:07:21,624 | INFO     | sum of square deviations: 2871616632.5
[2025-06-04 23:41:27] 2025-06-04 19:07:21,625 | INFO     | sum of deviations: -20081296196.99999
[2025-06-04 23:41:27] 2025-06-04 19:07:21,625 | INFO     | mean x: 1749057549.5
[2025-06-04 23:41:27] 2025-06-04 19:07:21,626 | INFO     | mean y: 2497490.5523809525
[2025-06-04 23:41:27] 2025-06-04 19:07:21,626 | INFO     | -- intersect: 12233706322.397894
[2025-06-04 23:41:27] 2025-06-04 19:07:21,626 | INFO     | intersect: 12233706322.397894
[2025-06-04 23:41:27] 2025-06-04 19:07:21,626 | INFO     | chi2: 2.610915220432795
[2025-06-04 23:41:27] 2025-06-04 19:07:21,627 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,628 | INFO     | sum of deviations: -5778297285.000002
[2025-06-04 23:41:27] 2025-06-04 19:07:21,628 | INFO     | mean x: 1749057397.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,628 | INFO     | mean y: 2508179.736585366
[2025-06-04 23:41:27] 2025-06-04 19:07:21,629 | INFO     | -- intersect: 3785838584.041808
[2025-06-04 23:41:27] 2025-06-04 19:07:21,629 | INFO     | intersect: 3785838584.041808
[2025-06-04 23:41:27] 2025-06-04 19:07:21,629 | INFO     | chi2: 1.848718147928782
[2025-06-04 23:41:27] 2025-06-04 19:07:21,629 | INFO     | current chi2=1.848718147928782 (change=29.192716275853204 %)
[2025-06-04 23:41:27] 2025-06-04 19:07:21,630 | INFO     | sum of square deviations: 2480604650.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,635 | INFO     | sum of deviations: -5402381887.499994
[2025-06-04 23:41:27] 2025-06-04 19:07:21,636 | INFO     | mean x: 1749057244.5
[2025-06-04 23:41:27] 2025-06-04 19:07:21,636 | INFO     | mean y: 2508480.335
[2025-06-04 23:41:27] 2025-06-04 19:07:21,636 | INFO     | -- intersect: 3811690720.5954337
[2025-06-04 23:41:27] 2025-06-04 19:07:21,636 | INFO     | intersect: 3811690720.5954337
[2025-06-04 23:41:27] 2025-06-04 19:07:21,636 | INFO     | chi2: 1.8486339747358587
[2025-06-04 23:41:27] 2025-06-04 19:07:21,636 | INFO     | current chi2=1.8486339747358587 (change=0.00455305710162541 %)
[2025-06-04 23:41:27] 2025-06-04 19:07:21,637 | INFO     | right removable region: 199
[2025-06-04 23:41:27] 2025-06-04 19:07:21,637 | INFO     | sum of square deviations: 2671343110.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,639 | INFO     | sum of deviations: -56390995367.00001
[2025-06-04 23:41:27] 2025-06-04 19:07:21,639 | INFO     | mean x: 1749057702.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,639 | INFO     | mean y: 2524891.995121951
[2025-06-04 23:41:27] 2025-06-04 19:07:21,639 | INFO     | -- intersect: 36924440463.558556
[2025-06-04 23:41:27] 2025-06-04 19:07:21,639 | INFO     | intersect: 36924440463.558556
[2025-06-04 23:41:27] 2025-06-04 19:07:21,639 | INFO     | chi2: 0.9790996071644706
[2025-06-04 23:41:27] 2025-06-04 19:07:21,639 | INFO     | current chi2=0.9790996071644706 (change=62.49975489429445 %)
[2025-06-04 23:41:27] 2025-06-04 19:07:21,640 | INFO     | sum of square deviations: 2480604650.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,641 | INFO     | sum of deviations: -52880335383.999985
[2025-06-04 23:41:27] 2025-06-04 19:07:21,641 | INFO     | mean x: 1749057854.5
[2025-06-04 23:41:27] 2025-06-04 19:07:21,642 | INFO     | mean y: 2522053.21
[2025-06-04 23:41:27] 2025-06-04 19:07:21,642 | INFO     | -- intersect: 37288095129.91106
[2025-06-04 23:41:27] 2025-06-04 19:07:21,642 | INFO     | intersect: 37288095129.91106
[2025-06-04 23:41:27] 2025-06-04 19:07:21,642 | INFO     | chi2: 0.970056972153723
[2025-06-04 23:41:27] 2025-06-04 19:07:21,642 | INFO     | current chi2=0.970056972153723 (change=0.9235664016795637 %)
[2025-06-04 23:41:27] 2025-06-04 19:07:21,642 | INFO     | left removable region: 20
[2025-06-04 23:41:27] 2025-06-04 19:07:21,643 | INFO     | sum of square deviations: 1778377530.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,644 | INFO     | sum of deviations: -24840178744.999996
[2025-06-04 23:41:27] 2025-06-04 19:07:21,644 | INFO     | mean x: 1749057824.0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,644 | INFO     | mean y: 2523167.217877095
[2025-06-04 23:41:27] 2025-06-04 19:07:21,644 | INFO     | -- intersect: 24433167532.984657
[2025-06-04 23:41:27] 2025-06-04 19:07:21,644 | INFO     | intersect: 24433167532.984657
[2025-06-04 23:41:27] 2025-06-04 19:07:21,645 | INFO     | chi2: 0.15232879460617624
[2025-06-04 23:41:27] 2025-06-04 19:07:21,645 | INFO     | -- intersect: 24433167532.984657
[2025-06-04 23:41:27] 2025-06-04 19:07:21,645 | INFO     | current memory leak: -13.97 B/s (using 179 data points, chi2=0.15)
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | ..............................
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | . Timing measurements:
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | . get job = 0 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | . initial setup = 2 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | . payload setup = 14 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | . stage-in = 0 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | . payload execution = 12783 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,646 | INFO     | . stage-out = 3 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,647 | INFO     | . log creation = 1 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,647 | INFO     | ..............................
[2025-06-04 23:41:27] 2025-06-04 19:07:21,981 | INFO     | 
[2025-06-04 23:41:27] 2025-06-04 19:07:21,981 | INFO     | job summary report
[2025-06-04 23:41:27] 2025-06-04 19:07:21,981 | INFO     | --------------------------------------------------
[2025-06-04 23:41:27] 2025-06-04 19:07:21,981 | INFO     | PanDA job id: 6677919838
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | task id: 45006595
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | errors: (none)
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | pilot state: finished 
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | transexitcode: 0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | exeerrorcode: 0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | exeerrordiag: 
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | exitcode: 0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | exitmsg: OK
[2025-06-04 23:41:27] 2025-06-04 19:07:21,982 | INFO     | cpuconsumptiontime: 48897 s
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | nevents: 400
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | neventsw: 0
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | pid: 4901
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | pgrp: 4901
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | corecount: 8
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | event service: False
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | sizes: {0: 2397342, 1: 2397370, 10: 2397576, 12: 2397604, 12802: 2426819, 12806: 2435762, 12807: 2435946, 12901: 2436116}
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | --------------------------------------------------
[2025-06-04 23:41:27] 2025-06-04 19:07:21,983 | INFO     | 
[2025-06-04 23:41:27] 2025-06-04 19:07:21,984 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-06-04 23:41:27] 2025-06-04 19:07:22,527 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,528 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,528 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,528 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,528 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,528 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,528 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,528 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 23:41:27] 2025-06-04 19:07:22,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 23:41:27] 2025-06-04 19:07:22,530 | INFO     | job 6677919838 has completed (purged errors)
[2025-06-04 23:41:27] 2025-06-04 19:07:22,530 | INFO     | overall cleanup function is called
[2025-06-04 23:41:27] 2025-06-04 19:07:23,539 | INFO     | --- collectZombieJob: --- 10, [4901]
[2025-06-04 23:41:27] 2025-06-04 19:07:23,539 | INFO     | zombie collector waiting for pid 4901
[2025-06-04 23:41:27] 2025-06-04 19:07:23,539 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 23:41:27] 2025-06-04 19:07:23,539 | INFO     | collected zombie processes
[2025-06-04 23:41:27] 2025-06-04 19:07:23,540 | INFO     | will attempt to kill all subprocesses of pid=4901
[2025-06-04 23:41:27] 2025-06-04 19:07:23,747 | INFO     | process IDs to be killed: [4901] (in reverse order)
[2025-06-04 23:41:27] 2025-06-04 19:07:23,874 | INFO     | PID=28730 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 23:41:27] 2025-06-04 19:07:23,874 | INFO     | .. there are 9 such processes running
[2025-06-04 23:41:27] 2025-06-04 19:07:24,647 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 23:41:27] 2025-06-04 19:07:24,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 23:41:27] 2025-06-04 19:07:24,650 | INFO     | did not find any defunct processes belonging to 4901
[2025-06-04 23:41:27] 2025-06-04 19:07:24,653 | INFO     | did not find any defunct processes belonging to 4901
[2025-06-04 23:41:27] 2025-06-04 19:07:24,654 | INFO     | ready for new job
[2025-06-04 23:41:27] 2025-06-04 19:07:24,654 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 23:41:27] 2025-06-04 19:07:24,656 | INFO     | **************************************
[2025-06-04 23:41:27] 2025-06-04 19:07:24,656 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 23:41:27] 2025-06-04 19:07:24,656 | INFO     | **************************************
[2025-06-04 23:41:27] 2025-06-04 19:07:24,656 | INFO     | 
[2025-06-04 23:41:27] 2025-06-04 19:07:24,657 | INFO     | pilot is running in a VM
[2025-06-04 23:41:27] 2025-06-04 19:07:24,657 | INFO     | architecture information:
[2025-06-04 23:41:27] 2025-06-04 19:07:24,666 | INFO     | executing command: cat /etc/os-release
[2025-06-04 23:41:27] 2025-06-04 19:07:24,871 | INFO     | cat /etc/os-release:
[2025-06-04 23:41:27] NAME="CentOS Linux"
[2025-06-04 23:41:27] VERSION="7 (Core)"
[2025-06-04 23:41:27] ID="centos"
[2025-06-04 23:41:27] ID_LIKE="rhel fedora"
[2025-06-04 23:41:27] VERSION_ID="7"
[2025-06-04 23:41:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 23:41:27] ANSI_COLOR="0;31"
[2025-06-04 23:41:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 23:41:27] HOME_URL="https://www.centos.org/"
[2025-06-04 23:41:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 23:41:27] 
[2025-06-04 23:41:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 23:41:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 23:41:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 23:41:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 23:41:27] 
[2025-06-04 23:41:27] 2025-06-04 19:07:24,872 | INFO     | **************************************
[2025-06-04 23:41:27] 2025-06-04 19:07:25,375 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-06-04 23:41:27] 2025-06-04 19:07:25,673 | INFO     | sufficient remaining disk space (496471375872 B)
[2025-06-04 23:41:27] 2025-06-04 19:07:25,673 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 23:41:27] 2025-06-04 19:07:25,674 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 23:41:27] 2025-06-04 19:07:25,674 | INFO     | update_server=False
[2025-06-04 23:41:27] 2025-06-04 19:07:25,674 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 23:41:27] 2025-06-04 19:07:25,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 23:41:27] 2025-06-04 19:07:25,885 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 23:41:27] 2025-06-04 19:07:25,885 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 23:41:27] 2025-06-04 19:07:25,885 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 23:41:27] 2025-06-04 19:07:25,951 | INFO     | all data control threads have been joined
[2025-06-04 23:41:27] 2025-06-04 19:07:26,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:41:27] 2025-06-04 19:07:26,007 | INFO     | aborting loop
[2025-06-04 23:41:27] 2025-06-04 19:07:26,680 | INFO     | [job] retrieve thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:26,683 | INFO     | all payload control threads have been joined
[2025-06-04 23:41:27] 2025-06-04 19:07:26,791 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:26,792 | INFO     | [data] copytool_in thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:26,825 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 23:41:27] 2025-06-04 19:07:26,832 | INFO     | [job] validate thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:26,901 | INFO     | all job control threads have been joined
[2025-06-04 23:41:27] 2025-06-04 19:07:26,957 | INFO     | [data] control thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,013 | INFO     | [job] job monitor thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,203 | INFO     | [payload] failed_post thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,402 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,599 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,685 | INFO     | [data] copytool_out thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,689 | INFO     | [payload] control thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,831 | INFO     | [job] queue monitor thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,907 | INFO     | [job] control thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:27,929 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:28,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 23:41:27] 2025-06-04 19:07:28,266 | INFO     | [payload] validate_post thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:32,120 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 23:41:27] 2025-06-04 19:07:32,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102592436032)>', '<ExcThread(monitor, started 140102160344832)>']
[2025-06-04 23:41:27] 2025-06-04 19:07:32,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 23:41:27] 2025-06-04 19:07:32,925 | INFO     | [monitor] control thread has ended
[2025-06-04 23:41:27] 2025-06-04 19:07:37,711 | INFO     | all workflow threads have been joined
[2025-06-04 23:41:27] 2025-06-04 19:07:37,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 23:41:27] 2025-06-04 19:07:37,711 | INFO     | traces error code: 0
[2025-06-04 23:41:27] 2025-06-04 19:07:37,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 23:41:27] 2025-06-04 19:07:38,091 [wrapper] ==== pilot stdout END ====
[2025-06-04 23:41:27] 2025-06-04 19:07:38,153 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 23:41:27] 2025-06-04 19:07:38,225 [wrapper] pilotpid: 28730
[2025-06-04 23:41:27] 2025-06-04 19:07:38,313 [wrapper] Pilot exit status: 0
[2025-06-04 23:41:27] 2025-06-04 19:07:38,715 [wrapper] pandaids: 6677919838
[2025-06-04 23:41:27] 2025-06-04 19:07:39,668 [wrapper] cleanup supervisor_pilot 24564 28731
[2025-06-04 23:41:27] 2025-06-04 19:07:39,716 [wrapper] Test setup, not cleaning
[2025-06-04 23:41:27] 2025-06-04 19:07:39,843 [wrapper] apfmon messages muted
[2025-06-04 23:41:27] 2025-06-04 19:07:39,951 [wrapper] ==== wrapper stdout END ====
[2025-06-04 23:41:27] 2025-06-04 19:07:40,041 [wrapper] ==== wrapper stderr END ====
[2025-06-04 23:41:27]  *** Error codes and diagnostics ***
[2025-06-04 23:41:27]     "exeErrorCode": 0,
[2025-06-04 23:41:27]     "exeErrorDiag": "",
[2025-06-04 23:41:27]     "pilotErrorCode": 0,
[2025-06-04 23:41:27]     "pilotErrorDiag": "",
[2025-06-04 23:41:27]  *** Listing of results directory ***
[2025-06-04 23:41:27] total 390120
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:01 queuedata.json
[2025-06-04 23:41:27] -rwx------. 1 boinc boinc     37140 Jun  3 20:02 runpilot2-wrapper.sh
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc       100 Jun  4 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 23:41:27] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 17:31 run_atlas
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc       105 Jun  4 17:31 job.xml
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc      6392 Jun  4 17:31 init_data.xml
[2025-06-04 23:41:27] -rw-r--r--. 2 boinc boinc 214503190 Jun  4 17:31 EVNT.45006593._001674.pool.root.1
[2025-06-04 23:41:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:31 start_atlas.sh
[2025-06-04 23:41:27] drwxrwx--x. 2 boinc boinc        68 Jun  4 17:31 shared
[2025-06-04 23:41:27] -rw-r--r--. 2 boinc boinc    508880 Jun  4 17:31 input.tar.gz
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc         0 Jun  4 17:31 boinc_lockfile
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc      2524 Jun  4 17:31 pandaJob.out
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc    990989 Jun  4 17:31 agis_schedconf.cvmfs.json
[2025-06-04 23:41:27] drwx------. 4 boinc boinc      4096 Jun  4 17:31 pilot3
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc 178149289 Jun  4 21:04 HITS.45006595._041764.pool.root.1
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc       531 Jun  4 21:04 boinc_task_state.xml
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc      1015 Jun  4 21:05 memory_monitor_summary.json
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc   1598969 Jun  4 21:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc    382204 Jun  4 21:05 log.45006595._041764.job.log.tgz.1
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc        95 Jun  4 21:07 pilot_heartbeat.json
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc      7692 Jun  4 21:07 heartbeat.json
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc      4417 Jun  4 21:07 pilotlog.txt
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc   1120306 Jun  4 21:07 log.45006595._041764.job.log.1
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc       357 Jun  4 21:07 output.list
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:07 runtime_log
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc   1525760 Jun  4 21:07 result.tar.gz
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc       657 Jun  4 21:07 sLSKDmZ9kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1alKDmYgjrQm.diag
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc      8673 Jun  4 21:07 runtime_log.err
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc      8192 Jun  4 23:41 boinc_mmap_file
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc        28 Jun  4 23:41 wrapper_checkpoint.txt
[2025-06-04 23:41:27] -rw-r--r--. 1 boinc boinc     20537 Jun  4 23:41 stderr.txt
[2025-06-04 23:41:27] HITS file was successfully produced:
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc 178149289 Jun  4 21:04 shared/HITS.pool.root.1
[2025-06-04 23:41:27]  *** Contents of shared directory: ***
[2025-06-04 23:41:27] total 385460
[2025-06-04 23:41:27] -rw-r--r--. 2 boinc boinc 214503190 Jun  4 17:31 ATLAS.root_0
[2025-06-04 23:41:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 17:31 start_atlas.sh
[2025-06-04 23:41:27] -rw-r--r--. 2 boinc boinc    508880 Jun  4 17:31 input.tar.gz
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc 178149289 Jun  4 21:04 HITS.pool.root.1
[2025-06-04 23:41:27] -rw-------. 1 boinc boinc   1525760 Jun  4 21:07 result.tar.gz
23:41:29 (25048): run_atlas exited; CPU time 49065.849805
23:41:29 (25048): called boinc_finish(0)

</stderr_txt>
]]>

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