Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:04:50 (20972): wrapper (7.7.26015): starting
13:04:50 (20972): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:04:51] Arguments: --nthreads 8
[2025-06-04 13:04:51] Threads: 8
[2025-06-04 13:04:51] Checking for CVMFS
[2025-06-04 13:04:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:04:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:04:52] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:04:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:04:52] 2.11.2.0 27863 33306 92964 146777 3 59 20555604 25165824 4300 130560 0 16234694 99.765 19482787 4730 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:04:52] CVMFS is ok
[2025-06-04 13:04:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:04:52] Checking for apptainer binary...
[2025-06-04 13:04:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:04:52] Running /usr/bin/apptainer --version
[2025-06-04 13:04:53] apptainer version 1.3.2-1.el7
[2025-06-04 13:04:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:04:57] cg-vwn495.simple-grid.lan
[2025-06-04 13:04:57] apptainer works
[2025-06-04 13:04:57] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:04:57] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:04:57] Starting ATLAS job with PandaID=6678154303
[2025-06-04 13:04:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:10:06]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:10:06] 2025-06-04 14:42:29,722 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:10:06] 2025-06-04 14:42:29,722 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:10:06] 2025-06-04 14:42:29,723 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:10:06] 2025-06-04 14:42:29,723 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:10:06] 2025-06-04 14:42:29,727 | INFO     | fitting pss+swap vs Time
[2025-06-04 17:10:06] 2025-06-04 14:42:29,727 | INFO     | sum of square deviations: 2518000700.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,729 | INFO     | sum of deviations: 87794122448.99998
[2025-06-04 17:10:06] 2025-06-04 14:42:29,729 | INFO     | mean x: 1749041903.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,729 | INFO     | mean y: 2397791.104477612
[2025-06-04 17:10:06] 2025-06-04 14:42:29,730 | INFO     | -- intersect: -60980746097.78084
[2025-06-04 17:10:06] 2025-06-04 14:42:29,730 | INFO     | intersect: -60980746097.78084
[2025-06-04 17:10:06] 2025-06-04 14:42:29,730 | INFO     | chi2: 8.127103856512951
[2025-06-04 17:10:06] 2025-06-04 14:42:29,731 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,732 | INFO     | sum of deviations: 98717891642.49998
[2025-06-04 17:10:06] 2025-06-04 14:42:29,732 | INFO     | mean x: 1749041750.5
[2025-06-04 17:10:06] 2025-06-04 14:42:29,732 | INFO     | mean y: 2406657.586734694
[2025-06-04 17:10:06] 2025-06-04 14:42:29,732 | INFO     | -- intersect: -73951430892.69753
[2025-06-04 17:10:06] 2025-06-04 14:42:29,732 | INFO     | intersect: -73951430892.69753
[2025-06-04 17:10:06] 2025-06-04 14:42:29,733 | INFO     | chi2: 7.439165576117987
[2025-06-04 17:10:06] 2025-06-04 14:42:29,733 | INFO     | current chi2=7.439165576117987 (change=8.46474085407017 %)
[2025-06-04 17:10:06] 2025-06-04 14:42:29,733 | INFO     | right removable region: 195
[2025-06-04 17:10:06] 2025-06-04 14:42:29,733 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,735 | INFO     | sum of deviations: 17845332901.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,735 | INFO     | mean x: 1749042055.5
[2025-06-04 17:10:06] 2025-06-04 14:42:29,735 | INFO     | mean y: 2455959.2040816327
[2025-06-04 17:10:06] 2025-06-04 14:42:29,735 | INFO     | -- intersect: -13366256222.2398
[2025-06-04 17:10:06] 2025-06-04 14:42:29,735 | INFO     | intersect: -13366256222.2398
[2025-06-04 17:10:06] 2025-06-04 14:42:29,735 | INFO     | chi2: 2.895267246412377
[2025-06-04 17:10:06] 2025-06-04 14:42:29,735 | INFO     | current chi2=2.895267246412377 (change=64.37516614123064 %)
[2025-06-04 17:10:06] 2025-06-04 14:42:29,736 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,737 | INFO     | sum of deviations: -24266478137.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,737 | INFO     | mean x: 1749042208.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,744 | INFO     | mean y: 2492645.5916230367
[2025-06-04 17:10:06] 2025-06-04 14:42:29,745 | INFO     | -- intersect: 19646967324.877857
[2025-06-04 17:10:06] 2025-06-04 14:42:29,745 | INFO     | intersect: 19646967324.877857
[2025-06-04 17:10:06] 2025-06-04 14:42:29,745 | INFO     | chi2: 0.9266503098344914
[2025-06-04 17:10:06] 2025-06-04 14:42:29,745 | INFO     | current chi2=0.9266503098344914 (change=67.99430826350365 %)
[2025-06-04 17:10:06] 2025-06-04 14:42:29,746 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 17:10:06] 2025-06-04 14:42:29,747 | INFO     | sum of deviations: -26304746258.5
[2025-06-04 17:10:06] 2025-06-04 14:42:29,747 | INFO     | mean x: 1749042360.5
[2025-06-04 17:10:06] 2025-06-04 14:42:29,748 | INFO     | mean y: 2494476.0483870967
[2025-06-04 17:10:06] 2025-06-04 14:42:29,748 | INFO     | -- intersect: 23060924892.645092
[2025-06-04 17:10:06] 2025-06-04 14:42:29,748 | INFO     | intersect: 23060924892.645092
[2025-06-04 17:10:06] 2025-06-04 14:42:29,748 | INFO     | chi2: 0.9001871386943058
[2025-06-04 17:10:06] 2025-06-04 14:42:29,748 | INFO     | current chi2=0.9001871386943058 (change=2.8557883010811453 %)
[2025-06-04 17:10:06] 2025-06-04 14:42:29,748 | INFO     | left removable region: 30
[2025-06-04 17:10:06] 2025-06-04 14:42:29,749 | INFO     | sum of square deviations: 1392881930.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,750 | INFO     | sum of deviations: 2723548374.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,750 | INFO     | mean x: 1749042635.0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,750 | INFO     | mean y: 2489209.6787878787
[2025-06-04 17:10:06] 2025-06-04 14:42:29,750 | INFO     | -- intersect: -3417472039.01867
[2025-06-04 17:10:06] 2025-06-04 14:42:29,750 | INFO     | intersect: -3417472039.01867
[2025-06-04 17:10:06] 2025-06-04 14:42:29,751 | INFO     | chi2: 0.0004988004486874352
[2025-06-04 17:10:06] 2025-06-04 14:42:29,751 | INFO     | -- intersect: -3417472039.01867
[2025-06-04 17:10:06] 2025-06-04 14:42:29,751 | INFO     | current memory leak: 1.96 B/s (using 165 data points, chi2=0.00)
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | ..............................
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . Timing measurements:
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . get job = 0 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . initial setup = 10 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . payload setup = 138 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . stage-in = 0 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . payload execution = 12408 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . stage-out = 3 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | . log creation = 1 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,752 | INFO     | ..............................
[2025-06-04 17:10:06] 2025-06-04 14:42:29,949 | INFO     | 
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | job summary report
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | --------------------------------------------------
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | PanDA job id: 6678154303
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | task id: 45006595
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | errors: (none)
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | pilot state: finished 
[2025-06-04 17:10:06] 2025-06-04 14:42:29,950 | INFO     | transexitcode: 0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | exeerrorcode: 0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | exeerrordiag: 
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | exitcode: 0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | exitmsg: OK
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | cpuconsumptiontime: 45434 s
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | nevents: 400
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | neventsw: 0
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | pid: 1346
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | pgrp: 1346
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | corecount: 8
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | event service: False
[2025-06-04 17:10:06] 2025-06-04 14:42:29,951 | INFO     | sizes: {0: 2405014, 1: 2405213, 12: 2405213, 22: 2405241, 33: 2405269, 44: 2405325, 55: 2405481, 65: 2405509, 76: 2405537, 87: 2405593, 92: 2405827, 97: 2406135, 1
[2025-06-04 17:10:06] 2025-06-04 14:42:29,952 | INFO     | --------------------------------------------------
[2025-06-04 17:10:06] 2025-06-04 14:42:29,952 | INFO     | 
[2025-06-04 17:10:06] 2025-06-04 14:42:29,952 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 17:10:06] 2025-06-04 14:42:30,511 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,511 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:10:06] 2025-06-04 14:42:30,513 | INFO     | job 6678154303 has completed (purged errors)
[2025-06-04 17:10:06] 2025-06-04 14:42:30,514 | INFO     | overall cleanup function is called
[2025-06-04 17:10:06] 2025-06-04 14:42:31,523 | INFO     | --- collectZombieJob: --- 10, [1346]
[2025-06-04 17:10:06] 2025-06-04 14:42:31,524 | INFO     | zombie collector waiting for pid 1346
[2025-06-04 17:10:06] 2025-06-04 14:42:31,524 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:10:06] 2025-06-04 14:42:31,524 | INFO     | collected zombie processes
[2025-06-04 17:10:06] 2025-06-04 14:42:31,524 | INFO     | will attempt to kill all subprocesses of pid=1346
[2025-06-04 17:10:06] 2025-06-04 14:42:31,650 | INFO     | process IDs to be killed: [1346] (in reverse order)
[2025-06-04 17:10:06] 2025-06-04 14:42:32,166 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:10:06] 2025-06-04 14:42:32,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:10:06] 2025-06-04 14:42:32,170 | INFO     | did not find any defunct processes belonging to 1346
[2025-06-04 17:10:06] 2025-06-04 14:42:32,173 | INFO     | did not find any defunct processes belonging to 1346
[2025-06-04 17:10:06] 2025-06-04 14:42:32,173 | INFO     | ready for new job
[2025-06-04 17:10:06] 2025-06-04 14:42:32,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:10:06] 2025-06-04 14:42:32,175 | INFO     | **************************************
[2025-06-04 17:10:06] 2025-06-04 14:42:32,175 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:10:06] 2025-06-04 14:42:32,175 | INFO     | **************************************
[2025-06-04 17:10:06] 2025-06-04 14:42:32,175 | INFO     | 
[2025-06-04 17:10:06] 2025-06-04 14:42:32,176 | INFO     | pilot is running in a VM
[2025-06-04 17:10:06] 2025-06-04 14:42:32,176 | INFO     | architecture information:
[2025-06-04 17:10:06] 2025-06-04 14:42:32,187 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:10:06] 2025-06-04 14:42:32,346 | INFO     | cat /etc/os-release:
[2025-06-04 17:10:06] NAME="CentOS Linux"
[2025-06-04 17:10:06] VERSION="7 (Core)"
[2025-06-04 17:10:06] ID="centos"
[2025-06-04 17:10:06] ID_LIKE="rhel fedora"
[2025-06-04 17:10:06] VERSION_ID="7"
[2025-06-04 17:10:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:10:06] ANSI_COLOR="0;31"
[2025-06-04 17:10:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:10:06] HOME_URL="https://www.centos.org/"
[2025-06-04 17:10:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:10:06] 
[2025-06-04 17:10:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:10:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:10:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:10:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:10:06] 
[2025-06-04 17:10:06] 2025-06-04 14:42:32,346 | INFO     | **************************************
[2025-06-04 17:10:06] 2025-06-04 14:42:32,850 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 17:10:06] 2025-06-04 14:42:33,025 | INFO     | sufficient remaining disk space (496396926976 B)
[2025-06-04 17:10:06] 2025-06-04 14:42:33,026 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:10:06] 2025-06-04 14:42:33,026 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:10:06] 2025-06-04 14:42:33,026 | INFO     | update_server=False
[2025-06-04 17:10:06] 2025-06-04 14:42:33,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:10:06] 2025-06-04 14:42:33,026 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 17:10:06] 2025-06-04 14:42:33,027 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:10:06] 2025-06-04 14:42:33,027 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:10:06] 2025-06-04 14:42:33,027 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:10:06] 2025-06-04 14:42:33,362 | INFO     | all job control threads have been joined
[2025-06-04 17:10:06] 2025-06-04 14:42:33,591 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:10:06] 2025-06-04 14:42:33,592 | INFO     | aborting loop
[2025-06-04 17:10:06] 2025-06-04 14:42:34,025 | INFO     | all data control threads have been joined
[2025-06-04 17:10:06] 2025-06-04 14:42:34,032 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:34,150 | INFO     | [job] validate thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:34,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:10:06] 2025-06-04 14:42:34,282 | INFO     | all payload control threads have been joined
[2025-06-04 17:10:06] 2025-06-04 14:42:34,330 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:34,369 | INFO     | [job] control thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:34,598 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:34,730 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:34,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:10:06] 2025-06-04 14:42:34,944 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:35,032 | INFO     | [data] control thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:35,214 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:35,254 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:10:06] 2025-06-04 14:42:35,280 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:35,289 | INFO     | [payload] control thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:35,419 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:35,916 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:36,204 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:39,265 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:43,772 | INFO     | job.realtimelogging is not enabled
[2025-06-04 17:10:06] 2025-06-04 14:42:44,779 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:10:06] 2025-06-04 14:42:44,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140546610071360)>', '<ExcThread(monitor, started 140545951262464)>']
[2025-06-04 17:10:06] 2025-06-04 14:42:45,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:10:06] 2025-06-04 14:42:45,098 | INFO     | [monitor] control thread has ended
[2025-06-04 17:10:06] 2025-06-04 14:42:49,816 | INFO     | all workflow threads have been joined
[2025-06-04 17:10:06] 2025-06-04 14:42:49,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:10:06] 2025-06-04 14:42:49,817 | INFO     | traces error code: 0
[2025-06-04 17:10:06] 2025-06-04 14:42:49,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:10:06] 2025-06-04 14:42:50,241 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:10:06] 2025-06-04 14:42:50,339 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:10:06] 2025-06-04 14:42:50,384 [wrapper] pilotpid: 25102
[2025-06-04 17:10:06] 2025-06-04 14:42:50,450 [wrapper] Pilot exit status: 0
[2025-06-04 17:10:06] 2025-06-04 14:42:50,943 [wrapper] pandaids: 6678154303
[2025-06-04 17:10:06] 2025-06-04 14:42:51,840 [wrapper] cleanup supervisor_pilot 31213 25103
[2025-06-04 17:10:06] 2025-06-04 14:42:51,955 [wrapper] Test setup, not cleaning
[2025-06-04 17:10:06] 2025-06-04 14:42:52,073 [wrapper] apfmon messages muted
[2025-06-04 17:10:06] 2025-06-04 14:42:52,164 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:10:06] 2025-06-04 14:42:52,264 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:10:06]  *** Error codes and diagnostics ***
[2025-06-04 17:10:06]     "exeErrorCode": 0,
[2025-06-04 17:10:06]     "exeErrorDiag": "",
[2025-06-04 17:10:06]     "pilotErrorCode": 0,
[2025-06-04 17:10:06]     "pilotErrorDiag": "",
[2025-06-04 17:10:06]  *** Listing of results directory ***
[2025-06-04 17:10:06] total 395568
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc    495897 Jun  4 00:42 pilot3.tar.gz
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc      5111 Jun  4 00:50 queuedata.json
[2025-06-04 17:10:06] -rwx------. 1 boinc boinc     37140 Jun  4 00:50 runpilot2-wrapper.sh
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:10:06] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:04 run_atlas
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:04 job.xml
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc      6392 Jun  4 13:04 init_data.xml
[2025-06-04 17:10:06] -rw-r--r--. 2 boinc boinc 218620839 Jun  4 13:04 EVNT.45006593._001911.pool.root.1
[2025-06-04 17:10:06] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:04 start_atlas.sh
[2025-06-04 17:10:06] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:04 shared
[2025-06-04 17:10:06] -rw-r--r--. 2 boinc boinc    508879 Jun  4 13:04 input.tar.gz
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:04 boinc_lockfile
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc      2525 Jun  4 13:04 pandaJob.out
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc    986812 Jun  4 13:08 agis_schedconf.cvmfs.json
[2025-06-04 17:10:06] drwx------. 4 boinc boinc      4096 Jun  4 13:08 pilot3
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc 179674541 Jun  4 16:39 HITS.45006595._047623.pool.root.1
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc       531 Jun  4 16:39 boinc_task_state.xml
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc      1030 Jun  4 16:40 memory_monitor_summary.json
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc   1598969 Jun  4 16:40 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc    375778 Jun  4 16:41 log.45006595._047623.job.log.tgz.1
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc        95 Jun  4 16:42 pilot_heartbeat.json
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc      7690 Jun  4 16:42 heartbeat.json
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc      4612 Jun  4 16:42 pilotlog.txt
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc   1100226 Jun  4 16:42 log.45006595._047623.job.log.1
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc       357 Jun  4 16:42 output.list
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc       620 Jun  4 16:42 runtime_log
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc   1495040 Jun  4 16:42 result.tar.gz
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc      8673 Jun  4 16:42 runtime_log.err
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc       657 Jun  4 16:42 PTJLDm1dpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwSmKDms0KOcm.diag
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc      8192 Jun  4 17:10 boinc_mmap_file
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc        28 Jun  4 17:10 wrapper_checkpoint.txt
[2025-06-04 17:10:06] -rw-r--r--. 1 boinc boinc     20488 Jun  4 17:10 stderr.txt
[2025-06-04 17:10:06] HITS file was successfully produced:
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc 179674541 Jun  4 16:39 shared/HITS.pool.root.1
[2025-06-04 17:10:06]  *** Contents of shared directory: ***
[2025-06-04 17:10:06] total 390940
[2025-06-04 17:10:06] -rw-r--r--. 2 boinc boinc 218620839 Jun  4 13:04 ATLAS.root_0
[2025-06-04 17:10:06] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:04 start_atlas.sh
[2025-06-04 17:10:06] -rw-r--r--. 2 boinc boinc    508879 Jun  4 13:04 input.tar.gz
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc 179674541 Jun  4 16:39 HITS.pool.root.1
[2025-06-04 17:10:06] -rw-------. 1 boinc boinc   1495040 Jun  4 16:42 result.tar.gz
17:10:08 (20972): run_atlas exited; CPU time 45606.904704
17:10:08 (20972): called boinc_finish(0)

</stderr_txt>
]]>

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