Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:35:58 (26626): wrapper (7.7.26015): starting
23:35:58 (26626): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 23:35:58] Arguments: --nthreads 12
[2025-06-03 23:35:58] Threads: 12
[2025-06-03 23:35:58] Checking for CVMFS
[2025-06-03 23:35:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 23:35:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 23:35:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 23:35:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 23:35:59] 2.11.2.0 2984 35103 84456 146767 3 56 16745618 20275200 1 130560 0 15529814 99.982 6369056 7763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 23:35:59] CVMFS is ok
[2025-06-03 23:35:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 23:35:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 23:35:59] Further information can be found at the LHC@home message board.
[2025-06-03 23:35:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 23:35:59] Checking for apptainer binary...
[2025-06-03 23:35:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 23:35:59] Running /usr/bin/apptainer --version
[2025-06-03 23:35:59] apptainer version 1.3.2-1.el7
[2025-06-03 23:35:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 23:36:00] c-205-26.aglt2.org
[2025-06-03 23:36:00] apptainer works
[2025-06-03 23:36:00] Set ATHENA_PROC_NUMBER=12
[2025-06-03 23:36:00] Set ATHENA_CORE_NUMBER=12
[2025-06-03 23:36:00] Starting ATLAS job with PandaID=6677920009
[2025-06-03 23:36:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:30:13 (12638): wrapper (7.7.26015): starting
00:30:13 (12638): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 00:30:13] Arguments: --nthreads 12
[2025-06-04 00:30:13] Threads: 12
[2025-06-04 00:30:13] This job has been restarted, cleaning up previous attempt
[2025-06-04 00:30:13] Checking for CVMFS
[2025-06-04 00:30:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 00:30:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 00:30:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 00:30:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 00:30:14] 2.11.2.0 2984 35157 84712 146768 1 3 16764275 20275200 1 130560 0 15597882 99.982 6370366 7764 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 00:30:14] CVMFS is ok
[2025-06-04 00:30:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 00:30:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 00:30:14] Further information can be found at the LHC@home message board.
[2025-06-04 00:30:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 00:30:14] Checking for apptainer binary...
[2025-06-04 00:30:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 00:30:14] Running /usr/bin/apptainer --version
[2025-06-04 00:30:14] apptainer version 1.3.2-1.el7
[2025-06-04 00:30:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 00:30:15] c-205-26.aglt2.org
[2025-06-04 00:30:15] apptainer works
[2025-06-04 00:30:15] Set ATHENA_PROC_NUMBER=12
[2025-06-04 00:30:15] Set ATHENA_CORE_NUMBER=12
[2025-06-04 00:30:15] Starting ATLAS job with PandaID=6677920009
[2025-06-04 00:30:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 01:36:29]  *** The last 200 lines of the pilot log: ***
[2025-06-04 01:36:29]  is_tar=False
[2025-06-04 01:36:29]  lfn=log.45006595._041935.job.log.tgz.1
[2025-06-04 01:36:29]  mtime=0
[2025-06-04 01:36:29]  protocol_id=None
[2025-06-04 01:36:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 01:36:29]  replicas=None
[2025-06-04 01:36:29]  scope=mc23_13p6TeV
[2025-06-04 01:36:29]  status=None
[2025-06-04 01:36:29]  status_code=0
[2025-06-04 01:36:29]  storage_token=
[2025-06-04 01:36:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677920009/log.45006595._041935.job.log.tgz.1
[2025-06-04 01:36:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/92/log.45006595._041935.job.log.tgz.1
[2025-06-04 01:36:29]  workdir=None
[2025-06-04 01:36:29] ]
[2025-06-04 01:36:29] 2025-06-04 05:36:00,571 | INFO     | transferring file log.45006595._041935.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677920009/log.45006595._041935.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 01:36:29] 2025-06-04 05:36:00,571 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677920009/log.45006595._041935.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._041935.job
[2025-06-04 01:36:29] 2025-06-04 05:36:00,593 | INFO     | adding to output.list: log.45006595._041935.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/92/log.45006595._041935.job.log.tg
[2025-06-04 01:36:29] 2025-06-04 05:36:00,594 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 01:36:29] 2025-06-04 05:36:00,594 | INFO     | summary of transferred files:
[2025-06-04 01:36:29] 2025-06-04 05:36:00,594 | INFO     |  -- lfn=log.45006595._041935.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 01:36:29] 2025-06-04 05:36:00,595 | INFO     | stage-out finished correctly
[2025-06-04 01:36:29] 2025-06-04 05:36:01,826 | INFO     | monitor loop #294: job 0:6677920009 is in state 'finished'
[2025-06-04 01:36:29] 2025-06-04 05:36:01,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 01:36:29] 2025-06-04 05:36:02,200 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 01:36:29] 2025-06-04 05:36:04,328 | INFO     | monitor loop #295: job 0:6677920009 is in state 'finished'
[2025-06-04 01:36:29] 2025-06-04 05:36:04,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 01:36:29] 2025-06-04 05:36:04,734 | INFO     | job 6677920009 has state=finished
[2025-06-04 01:36:29] 2025-06-04 05:36:04,734 | INFO     | preparing for final server update for job 6677920009 in state='finished'
[2025-06-04 01:36:29] 2025-06-04 05:36:04,735 | INFO     | this job has now completed (state=finished)
[2025-06-04 01:36:29] 2025-06-04 05:36:04,735 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 01:36:29] 2025-06-04 05:36:04,735 | INFO     | log transfer has been attempted: DONE
[2025-06-04 01:36:29] 2025-06-04 05:36:04,735 | INFO     | job 6677920009 has finished - writing final server update
[2025-06-04 01:36:29] 2025-06-04 05:36:04,736 | INFO     | total number of processed events: 400 (read)
[2025-06-04 01:36:29] 2025-06-04 05:36:04,737 | INFO     | executing command: lscpu
[2025-06-04 01:36:29] 2025-06-04 05:36:04,764 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 01:36:29] 2025-06-04 05:36:06,832 | INFO     | monitor loop #296: job 0:6677920009 is in state 'finished'
[2025-06-04 01:36:29] 2025-06-04 05:36:06,832 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 01:36:29] 2025-06-04 05:36:09,334 | INFO     | monitor loop #297: job 0:6677920009 is in state 'finished'
[2025-06-04 01:36:29] 2025-06-04 05:36:09,335 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 01:36:29] 2025-06-04 05:36:09,433 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 01:36:29] 2025-06-04 05:36:09,433 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677920009/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 01:36:29] 2025-06-04 05:36:09,434 | INFO     | extracted standard info from prmon json
[2025-06-04 01:36:29] 2025-06-04 05:36:09,434 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 01:36:29] 2025-06-04 05:36:09,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 01:36:29] 2025-06-04 05:36:09,435 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 01:36:29] 2025-06-04 05:36:09,435 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 01:36:29] 2025-06-04 05:36:09,436 | INFO     | fitting pss+swap vs Time
[2025-06-04 01:36:29] 2025-06-04 05:36:09,437 | INFO     | sum of square deviations: 57407588.0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,437 | INFO     | sum of deviations: -5500601190.0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,437 | INFO     | mean x: 1749013472.0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,437 | INFO     | mean y: 2857523.8771929825
[2025-06-04 01:36:29] 2025-06-04 05:36:09,437 | INFO     | -- intersect: 167587421177.8881
[2025-06-04 01:36:29] 2025-06-04 05:36:09,437 | INFO     | intersect: 167587421177.8881
[2025-06-04 01:36:29] 2025-06-04 05:36:09,438 | INFO     | chi2: 0.0564702094045861
[2025-06-04 01:36:29] 2025-06-04 05:36:09,438 | INFO     | -- intersect: 167587421177.8881
[2025-06-04 01:36:29] 2025-06-04 05:36:09,438 | INFO     | current memory leak: -95.82 B/s (using 57 data points, chi2=0.06)
[2025-06-04 01:36:29] 2025-06-04 05:36:09,438 | INFO     | ..............................
[2025-06-04 01:36:29] 2025-06-04 05:36:09,438 | INFO     | . Timing measurements:
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | . get job = 0 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | . initial setup = 1 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | . payload setup = 9 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | . stage-in = 0 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | . payload execution = 3902 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | . stage-out = 0 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | . log creation = 0 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,439 | INFO     | ..............................
[2025-06-04 01:36:29] 2025-06-04 05:36:09,523 | INFO     | 
[2025-06-04 01:36:29] 2025-06-04 05:36:09,523 | INFO     | job summary report
[2025-06-04 01:36:29] 2025-06-04 05:36:09,523 | INFO     | --------------------------------------------------
[2025-06-04 01:36:29] 2025-06-04 05:36:09,523 | INFO     | PanDA job id: 6677920009
[2025-06-04 01:36:29] 2025-06-04 05:36:09,523 | INFO     | task id: 45006595
[2025-06-04 01:36:29] 2025-06-04 05:36:09,524 | INFO     | errors: (none)
[2025-06-04 01:36:29] 2025-06-04 05:36:09,524 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 01:36:29] 2025-06-04 05:36:09,524 | INFO     | pilot state: finished 
[2025-06-04 01:36:29] 2025-06-04 05:36:09,524 | INFO     | transexitcode: 0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,524 | INFO     | exeerrorcode: 0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,524 | INFO     | exeerrordiag: 
[2025-06-04 01:36:29] 2025-06-04 05:36:09,525 | INFO     | exitcode: 0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,525 | INFO     | exitmsg: OK
[2025-06-04 01:36:29] 2025-06-04 05:36:09,525 | INFO     | cpuconsumptiontime: 41620 s
[2025-06-04 01:36:29] 2025-06-04 05:36:09,525 | INFO     | nevents: 400
[2025-06-04 01:36:29] 2025-06-04 05:36:09,525 | INFO     | neventsw: 0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,525 | INFO     | pid: 22682
[2025-06-04 01:36:29] 2025-06-04 05:36:09,525 | INFO     | pgrp: 22682
[2025-06-04 01:36:29] 2025-06-04 05:36:09,526 | INFO     | corecount: 12
[2025-06-04 01:36:29] 2025-06-04 05:36:09,526 | INFO     | event service: False
[2025-06-04 01:36:29] 2025-06-04 05:36:09,526 | INFO     | sizes: {0: 2405184, 5: 2405390, 11: 2405446, 3916: 2431126, 3917: 2440067, 3918: 2440123, 3926: 2440421}
[2025-06-04 01:36:29] 2025-06-04 05:36:09,526 | INFO     | --------------------------------------------------
[2025-06-04 01:36:29] 2025-06-04 05:36:09,526 | INFO     | 
[2025-06-04 01:36:29] 2025-06-04 05:36:09,526 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 01:36:29] 2025-06-04 05:36:09,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,552 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,552 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,552 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,555 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 01:36:29] 2025-06-04 05:36:09,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,555 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 01:36:29] 2025-06-04 05:36:09,555 | INFO     | job 6677920009 has completed (purged errors)
[2025-06-04 01:36:29] 2025-06-04 05:36:09,556 | INFO     | overall cleanup function is called
[2025-06-04 01:36:29] 2025-06-04 05:36:10,563 | INFO     | --- collectZombieJob: --- 10, [22682]
[2025-06-04 01:36:29] 2025-06-04 05:36:10,564 | INFO     | zombie collector waiting for pid 22682
[2025-06-04 01:36:29] 2025-06-04 05:36:10,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 01:36:29] 2025-06-04 05:36:10,564 | INFO     | collected zombie processes
[2025-06-04 01:36:29] 2025-06-04 05:36:10,564 | INFO     | will attempt to kill all subprocesses of pid=22682
[2025-06-04 01:36:29] 2025-06-04 05:36:10,658 | INFO     | process IDs to be killed: [22682] (in reverse order)
[2025-06-04 01:36:29] 2025-06-04 05:36:10,711 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 01:36:29] 2025-06-04 05:36:10,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 01:36:29] 2025-06-04 05:36:10,715 | INFO     | did not find any defunct processes belonging to 22682
[2025-06-04 01:36:29] 2025-06-04 05:36:10,718 | INFO     | did not find any defunct processes belonging to 22682
[2025-06-04 01:36:29] 2025-06-04 05:36:10,718 | INFO     | ready for new job
[2025-06-04 01:36:29] 2025-06-04 05:36:10,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 01:36:29] 2025-06-04 05:36:10,720 | INFO     | **************************************
[2025-06-04 01:36:29] 2025-06-04 05:36:10,720 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 01:36:29] 2025-06-04 05:36:10,720 | INFO     | **************************************
[2025-06-04 01:36:29] 2025-06-04 05:36:10,720 | INFO     | 
[2025-06-04 01:36:29] 2025-06-04 05:36:10,721 | INFO     | architecture information:
[2025-06-04 01:36:29] 2025-06-04 05:36:10,721 | INFO     | executing command: cat /etc/os-release
[2025-06-04 01:36:29] 2025-06-04 05:36:10,737 | INFO     | cat /etc/os-release:
[2025-06-04 01:36:29] NAME="CentOS Linux"
[2025-06-04 01:36:29] VERSION="7 (Core)"
[2025-06-04 01:36:29] ID="centos"
[2025-06-04 01:36:29] ID_LIKE="rhel fedora"
[2025-06-04 01:36:29] VERSION_ID="7"
[2025-06-04 01:36:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 01:36:29] ANSI_COLOR="0;31"
[2025-06-04 01:36:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 01:36:29] HOME_URL="https://www.centos.org/"
[2025-06-04 01:36:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 01:36:29] 
[2025-06-04 01:36:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 01:36:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 01:36:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 01:36:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 01:36:29] 
[2025-06-04 01:36:29] 2025-06-04 05:36:10,737 | INFO     | **************************************
[2025-06-04 01:36:29] 2025-06-04 05:36:11,240 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 01:36:29] 2025-06-04 05:36:11,257 | INFO     | sufficient remaining disk space (29420945408 B)
[2025-06-04 01:36:29] 2025-06-04 05:36:11,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 01:36:29] 2025-06-04 05:36:11,258 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 01:36:29] 2025-06-04 05:36:11,258 | INFO     | update_server=False
[2025-06-04 01:36:29] 2025-06-04 05:36:11,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 01:36:29] 2025-06-04 05:36:11,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:36:29] 2025-06-04 05:36:11,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 01:36:29] 2025-06-04 05:36:11,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 01:36:29] 2025-06-04 05:36:11,259 | INFO     | aborting loop
[2025-06-04 01:36:29] 2025-06-04 05:36:11,419 | INFO     | all job control threads have been joined
[2025-06-04 01:36:29] 2025-06-04 05:36:11,562 | INFO     | all data control threads have been joined
[2025-06-04 01:36:29] 2025-06-04 05:36:11,842 | INFO     | PID=16255 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 01:36:29] 2025-06-04 05:36:11,842 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 01:36:29] 2025-06-04 05:36:11,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 01:36:29] 2025-06-04 05:36:11,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 01:36:29] 2025-06-04 05:36:12,264 | INFO     | [job] retrieve thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,265 | INFO     | [job] queue monitor thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,265 | INFO     | [job] job monitor thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,277 | INFO     | all payload control threads have been joined
[2025-06-04 01:36:29] 2025-06-04 05:36:12,314 | INFO     | [payload] failed_post thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,395 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,401 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,427 | INFO     | [job] control thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,568 | INFO     | [data] control thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,777 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:12,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 01:36:29] 2025-06-04 05:36:12,859 | INFO     | [data] copytool_in thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:13,265 | INFO     | [data] copytool_out thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:13,283 | INFO     | [payload] control thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:13,580 | INFO     | [job] validate thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:13,670 | INFO     | [payload] validate_post thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:16,800 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:22,118 | INFO     | job.realtimelogging is not enabled
[2025-06-04 01:36:29] 2025-06-04 05:36:23,120 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 01:36:29] 2025-06-04 05:36:24,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176478594880)>', '<ExcThread(monitor, started 140175871022848)>']
[2025-06-04 01:36:29] 2025-06-04 05:36:24,906 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 01:36:29] 2025-06-04 05:36:24,907 | INFO     | [monitor] control thread has ended
[2025-06-04 01:36:29] 2025-06-04 05:36:29,031 | INFO     | all workflow threads have been joined
[2025-06-04 01:36:29] 2025-06-04 05:36:29,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 01:36:29] 2025-06-04 05:36:29,031 | INFO     | traces error code: 0
[2025-06-04 01:36:29] 2025-06-04 05:36:29,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 01:36:29] 2025-06-04 05:36:29,118 [wrapper] ==== pilot stdout END ====
[2025-06-04 01:36:29] 2025-06-04 05:36:29,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 01:36:29] 2025-06-04 05:36:29,126 [wrapper] pilotpid: 16255
[2025-06-04 01:36:29] 2025-06-04 05:36:29,130 [wrapper] Pilot exit status: 0
[2025-06-04 01:36:29] 2025-06-04 05:36:29,146 [wrapper] pandaids: 6677920009 6677920009
[2025-06-04 01:36:29] 2025-06-04 05:36:29,186 [wrapper] cleanup supervisor_pilot 30787 16256
[2025-06-04 01:36:29] 2025-06-04 05:36:29,190 [wrapper] Test setup, not cleaning
[2025-06-04 01:36:29] 2025-06-04 05:36:29,194 [wrapper] apfmon messages muted
[2025-06-04 01:36:29] 2025-06-04 05:36:29,198 [wrapper] ==== wrapper stdout END ====
[2025-06-04 01:36:29] 2025-06-04 05:36:29,202 [wrapper] ==== wrapper stderr END ====
[2025-06-04 01:36:29]  *** Error codes and diagnostics ***
[2025-06-04 01:36:29]     "exeErrorCode": 0,
[2025-06-04 01:36:29]     "exeErrorDiag": "",
[2025-06-04 01:36:29]     "pilotErrorCode": 0,
[2025-06-04 01:36:29]     "pilotErrorDiag": "",
[2025-06-04 01:36:29]  *** Listing of results directory ***
[2025-06-04 01:36:29] total 601180
[2025-06-04 01:36:29] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 13:46 pilot3.tar.gz
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 14:13 queuedata.json
[2025-06-04 01:36:29] -rwx------ 1 boincer umatlas     37140 Jun  3 14:16 runpilot2-wrapper.sh
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas       100 Jun  3 23:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 01:36:29] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 23:35 run_atlas
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas       105 Jun  3 23:35 job.xml
[2025-06-04 01:36:29] -rw-r--r-- 3 boincer umatlas 214929446 Jun  3 23:35 EVNT.45006593._001682.pool.root.1
[2025-06-04 01:36:29] -rw-r--r-- 3 boincer umatlas 214929446 Jun  3 23:35 ATLAS.root_0
[2025-06-04 01:36:29] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 23:35 start_atlas.sh
[2025-06-04 01:36:29] drwxrwx--x 2 boincer umatlas      4096 Jun  3 23:35 shared
[2025-06-04 01:36:29] -rw-r--r-- 2 boincer umatlas    508884 Jun  3 23:35 input.tar.gz
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas         0 Jun  3 23:35 boinc_lockfile
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas   1603667 Jun  3 23:36 agis_ddmendpoints.agis.ALL.json
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 00:30 pandaJob.out
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas    986745 Jun  4 00:30 agis_schedconf.cvmfs.json
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas      5868 Jun  4 01:31 init_data.xml
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas        96 Jun  4 01:35 pilot_heartbeat.json
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas 180436257 Jun  4 01:35 HITS.45006595._041935.pool.root.1
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas       529 Jun  4 01:35 boinc_task_state.xml
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas      1046 Jun  4 01:35 memory_monitor_summary.json
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas    357464 Jun  4 01:36 log.45006595._041935.job.log.tgz.1
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas      7750 Jun  4 01:36 heartbeat.json
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 01:36 boinc_mmap_file
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas        27 Jun  4 01:36 wrapper_checkpoint.txt
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas      4742 Jun  4 01:36 pilotlog.txt
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas    383404 Jun  4 01:36 log.45006595._041935.job.log.1
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas       357 Jun  4 01:36 output.list
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas       620 Jun  4 01:36 runtime_log
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas    757760 Jun  4 01:36 result.tar.gz
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas       784 Jun  4 01:36 Vw7MDmIMlg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmbXZKDm7tqe9m.diag
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas      8746 Jun  4 01:36 runtime_log.err
[2025-06-04 01:36:29] -rw-r--r-- 1 boincer umatlas     23698 Jun  4 01:36 stderr.txt
[2025-06-04 01:36:29] HITS file was successfully produced:
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas 180436257 Jun  4 01:35 shared/HITS.pool.root.1
[2025-06-04 01:36:29]  *** Contents of shared directory: ***
[2025-06-04 01:36:29] total 387360
[2025-06-04 01:36:29] -rw-r--r-- 3 boincer umatlas 214929446 Jun  3 23:35 ATLAS.root_0
[2025-06-04 01:36:29] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 23:35 start_atlas.sh
[2025-06-04 01:36:29] -rw-r--r-- 2 boincer umatlas    508884 Jun  3 23:35 input.tar.gz
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas 180436257 Jun  4 01:35 HITS.pool.root.1
[2025-06-04 01:36:29] -rw------- 1 boincer umatlas    757760 Jun  4 01:36 result.tar.gz
01:36:30 (12638): run_atlas exited; CPU time 41589.034671
01:36:30 (12638): called boinc_finish(0)

</stderr_txt>
]]>

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