Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:18:09 (1307038): wrapper (7.7.26015): starting
18:18:09 (1307038): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 18:18:09] Arguments: --nthreads 12
[2025-06-05 18:18:09] Threads: 12
[2025-06-05 18:18:09] Checking for CVMFS
[2025-06-05 18:18:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 18:18:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 18:18:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 18:18:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 18:18:09] 2.12.7.0 16265 3528 66000 146829 3 41 2694470 4096001 914 130560 0 3495114 99.992 868303 152 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 18:18:09] CVMFS is ok
[2025-06-05 18:18:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 18:18:09] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 18:18:09] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 18:18:09] Further information can be found at the LHC@home message board.
[2025-06-05 18:18:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 18:18:09] Checking for apptainer binary...
[2025-06-05 18:18:09] apptainer is not installed, using version from CVMFS
[2025-06-05 18:18:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 18:18:09] gg3250
[2025-06-05 18:18:09] apptainer works
[2025-06-05 18:18:09] Set ATHENA_PROC_NUMBER=12
[2025-06-05 18:18:09] Set ATHENA_CORE_NUMBER=12
[2025-06-05 18:18:09] Starting ATLAS job with PandaID=6678072230
[2025-06-05 18:18:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 21:24:58]  *** The last 200 lines of the pilot log: ***
[2025-06-05 21:24:58] 2025-06-05 21:24:36,423 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 21:24:58] 2025-06-05 21:24:38,357 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 21:24:58] 2025-06-05 21:24:38,358 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/3/PanDA_Pilot-6678072230/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,358 | INFO     | extracted standard info from prmon json
[2025-06-05 21:24:58] 2025-06-05 21:24:38,358 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 21:24:58] 2025-06-05 21:24:38,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 21:24:58] 2025-06-05 21:24:38,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 21:24:58] 2025-06-05 21:24:38,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 21:24:58] 2025-06-05 21:24:38,360 | INFO     | fitting pss+swap vs Time
[2025-06-05 21:24:58] 2025-06-05 21:24:38,360 | INFO     | sum of square deviations: 1900284932.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,361 | INFO     | sum of deviations: -8676474629.000002
[2025-06-05 21:24:58] 2025-06-05 21:24:38,361 | INFO     | mean x: 1749153067.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,361 | INFO     | mean y: 2699343.606557377
[2025-06-05 21:24:58] 2025-06-05 21:24:38,361 | INFO     | -- intersect: 7989123880.525971
[2025-06-05 21:24:58] 2025-06-05 21:24:38,361 | INFO     | intersect: 7989123880.525971
[2025-06-05 21:24:58] 2025-06-05 21:24:38,361 | INFO     | chi2: 1.3447890191951124
[2025-06-05 21:24:58] 2025-06-05 21:24:38,361 | INFO     | sum of square deviations: 1748737904.5
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | sum of deviations: -8656990863.000002
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | mean x: 1749152914.5
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | mean y: 2699366.0561797754
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | -- intersect: 8661744703.75408
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | intersect: 8661744703.75408
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | chi2: 1.3430058595373942
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | current chi2=1.3430058595373942 (change=0.1325977259083741 %)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | right removable region: 177
[2025-06-05 21:24:58] 2025-06-05 21:24:38,362 | INFO     | sum of square deviations: 1748737904.5
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | sum of deviations: -33929326761.5
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | mean x: 1749153219.5
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | mean y: 2724386.6685393257
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | -- intersect: 33940109164.35707
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | intersect: 33940109164.35707
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | chi2: 0.0900927536869122
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | current chi2=0.0900927536869122 (change=93.3006031131311 %)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,363 | INFO     | sum of square deviations: 1605470102.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | sum of deviations: -31590465280.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | mean x: 1749153372.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | mean y: 2721890.554913295
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | -- intersect: 34420409768.22112
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | intersect: 34420409768.22112
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | chi2: 0.08979138991466333
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | current chi2=0.08979138991466333 (change=0.3345038972792038 %)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | left removable region: 20
[2025-06-05 21:24:58] 2025-06-05 21:24:38,364 | INFO     | sum of square deviations: 1199940638.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | sum of deviations: -24200043037.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | mean x: 1749153494.0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | mean y: 2714660.3503184714
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | -- intersect: 35279117919.49131
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | intersect: 35279117919.49131
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | chi2: 0.0833730533131078
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | -- intersect: 35279117919.49131
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | current memory leak: -20.17 B/s (using 157 data points, chi2=0.08)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | ..............................
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | . Timing measurements:
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | . get job = 0 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | . initial setup = 2 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | . payload setup = 3 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | . stage-in = 0 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,365 | INFO     | . payload execution = 11156 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,366 | INFO     | . stage-out = 0 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,366 | INFO     | . log creation = 0 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,366 | INFO     | ..............................
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | 
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | job summary report
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | --------------------------------------------------
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | PanDA job id: 6678072230
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | task id: 45006595
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | errors: (none)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 21:24:58] 2025-06-05 21:24:38,577 | INFO     | pilot state: finished 
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | transexitcode: 0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | exeerrorcode: 0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | exeerrordiag: 
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | exitcode: 0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | exitmsg: OK
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | cpuconsumptiontime: 37294 s
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | nevents: 400
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | neventsw: 0
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | pid: 1317185
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | pgrp: 1317185
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | corecount: 12
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | event service: False
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | sizes: {0: 2397365, 3: 2397571, 11: 2397599, 11163: 2426593, 11164: 2435580, 11166: 2435636, 11169: 2435934}
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | --------------------------------------------------
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | 
[2025-06-05 21:24:58] 2025-06-05 21:24:38,578 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,588 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | job 6678072230 has completed (purged errors)
[2025-06-05 21:24:58] 2025-06-05 21:24:38,589 | INFO     | overall cleanup function is called
[2025-06-05 21:24:58] 2025-06-05 21:24:39,580 | WARNING  | process 1317185 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 21:24:58] 2025-06-05 21:24:39,595 | INFO     | --- collectZombieJob: --- 10, [1317185]
[2025-06-05 21:24:58] 2025-06-05 21:24:39,596 | INFO     | zombie collector waiting for pid 1317185
[2025-06-05 21:24:58] 2025-06-05 21:24:39,596 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 21:24:58] 2025-06-05 21:24:39,596 | INFO     | collected zombie processes
[2025-06-05 21:24:58] 2025-06-05 21:24:39,596 | INFO     | will attempt to kill all subprocesses of pid=1317185
[2025-06-05 21:24:58] 2025-06-05 21:24:39,624 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/3/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 21:24:58] 2025-06-05 21:24:39,690 | INFO     | process IDs to be killed: [1317185] (in reverse order)
[2025-06-05 21:24:58] 2025-06-05 21:24:39,701 | INFO     | number of running child processes to parent process 1317185: 1
[2025-06-05 21:24:58] 2025-06-05 21:24:39,701 | INFO     | maximum number of monitored processes: 6
[2025-06-05 21:24:58] 2025-06-05 21:24:39,701 | INFO     | aborting job monitoring since job object (job id=6678072230) has expired
[2025-06-05 21:24:58] 2025-06-05 21:24:39,712 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 21:24:58] 2025-06-05 21:24:39,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 21:24:58] 2025-06-05 21:24:39,713 | INFO     | did not find any defunct processes belonging to 1317185
[2025-06-05 21:24:58] 2025-06-05 21:24:39,715 | INFO     | did not find any defunct processes belonging to 1317185
[2025-06-05 21:24:58] 2025-06-05 21:24:39,715 | INFO     | ready for new job
[2025-06-05 21:24:58] 2025-06-05 21:24:39,715 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 21:24:58] 2025-06-05 21:24:39,716 | INFO     | **************************************
[2025-06-05 21:24:58] 2025-06-05 21:24:39,716 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 21:24:58] 2025-06-05 21:24:39,716 | INFO     | **************************************
[2025-06-05 21:24:58] 2025-06-05 21:24:39,716 | INFO     | 
[2025-06-05 21:24:58] 2025-06-05 21:24:39,735 | INFO     | architecture information:
[2025-06-05 21:24:58] 2025-06-05 21:24:39,735 | INFO     | executing command: cat /etc/os-release
[2025-06-05 21:24:58] 2025-06-05 21:24:39,742 | INFO     | cat /etc/os-release:
[2025-06-05 21:24:58] NAME="CentOS Linux"
[2025-06-05 21:24:58] VERSION="7 (Core)"
[2025-06-05 21:24:58] ID="centos"
[2025-06-05 21:24:58] ID_LIKE="rhel fedora"
[2025-06-05 21:24:58] VERSION_ID="7"
[2025-06-05 21:24:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 21:24:58] ANSI_COLOR="0;31"
[2025-06-05 21:24:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 21:24:58] HOME_URL="https://www.centos.org/"
[2025-06-05 21:24:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 21:24:58] 
[2025-06-05 21:24:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 21:24:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 21:24:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 21:24:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 21:24:58] 
[2025-06-05 21:24:58] 2025-06-05 21:24:39,742 | INFO     | **************************************
[2025-06-05 21:24:58] 2025-06-05 21:24:40,243 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/3
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | INFO     | sufficient remaining disk space (72648491008 B)
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | INFO     | update_server=False
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:24:58] 2025-06-05 21:24:40,251 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 21:24:58] 2025-06-05 21:24:40,252 | INFO     | will abort loop
[2025-06-05 21:24:58] 2025-06-05 21:24:40,252 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 21:24:58] 2025-06-05 21:24:40,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 21:24:58] 2025-06-05 21:24:40,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 21:24:58] 2025-06-05 21:24:40,255 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 21:24:58] 2025-06-05 21:24:40,422 | INFO     | all payload control threads have been joined
[2025-06-05 21:24:58] 2025-06-05 21:24:41,142 | INFO     | all data control threads have been joined
[2025-06-05 21:24:58] 2025-06-05 21:24:41,226 | INFO     | all job control threads have been joined
[2025-06-05 21:24:58] 2025-06-05 21:24:41,257 | INFO     | [job] job monitor thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:41,259 | INFO     | [job] retrieve thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:41,259 | INFO     | [job] queue monitor thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:41,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 21:24:58] 2025-06-05 21:24:41,427 | INFO     | [payload] control thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:41,461 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,019 | INFO     | [payload] validate_post thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,043 | INFO     | [payload] failed_post thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,148 | INFO     | [data] control thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,231 | INFO     | [job] control thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,251 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,255 | INFO     | [data] copytool_out thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,267 | INFO     | [data] copytool_in thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,271 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:42,543 | INFO     | [job] validate thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:45,407 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:50,393 | INFO     | job.realtimelogging is not enabled
[2025-06-05 21:24:58] 2025-06-05 21:24:51,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 21:24:58] 2025-06-05 21:24:53,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372792588096)>', '<ExcThread(monitor, started 140372214806272)>']
[2025-06-05 21:24:58] 2025-06-05 21:24:53,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 21:24:58] 2025-06-05 21:24:53,303 | INFO     | [monitor] control thread has ended
[2025-06-05 21:24:58] 2025-06-05 21:24:58,191 | INFO     | all workflow threads have been joined
[2025-06-05 21:24:58] 2025-06-05 21:24:58,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 21:24:58] 2025-06-05 21:24:58,191 | INFO     | traces error code: 0
[2025-06-05 21:24:58] 2025-06-05 21:24:58,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 21:24:58] 2025-06-05 21:24:58,263 [wrapper] ==== pilot stdout END ====
[2025-06-05 21:24:58] 2025-06-05 21:24:58,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 21:24:58] 2025-06-05 21:24:58,266 [wrapper] pilotpid: 1310663
[2025-06-05 21:24:58] 2025-06-05 21:24:58,267 [wrapper] Pilot exit status: 0
[2025-06-05 21:24:58] 2025-06-05 21:24:58,276 [wrapper] pandaids: 6678072230
[2025-06-05 21:24:58] 2025-06-05 21:24:58,285 [wrapper] cleanup supervisor_pilot 1364971 1310664
[2025-06-05 21:24:58] 2025-06-05 21:24:58,286 [wrapper] Test setup, not cleaning
[2025-06-05 21:24:58] 2025-06-05 21:24:58,287 [wrapper] apfmon messages muted
[2025-06-05 21:24:58] 2025-06-05 21:24:58,289 [wrapper] ==== wrapper stdout END ====
[2025-06-05 21:24:58] 2025-06-05 21:24:58,290 [wrapper] ==== wrapper stderr END ====
[2025-06-05 21:24:58]  *** Error codes and diagnostics ***
[2025-06-05 21:24:58]     "exeErrorCode": 0,
[2025-06-05 21:24:58]     "exeErrorDiag": "",
[2025-06-05 21:24:58]     "pilotErrorCode": 0,
[2025-06-05 21:24:58]     "pilotErrorDiag": "",
[2025-06-05 21:24:58]  *** Listing of results directory ***
[2025-06-05 21:24:58] total 397748
[2025-06-05 21:24:58] -rw-r--r-- 1 boinc boinc    495897 Jun  3 20:49 pilot3.tar.gz
[2025-06-05 21:24:58] -rw-r--r-- 1 boinc boinc      5111 Jun  3 20:55 queuedata.json
[2025-06-05 21:24:58] -rwx------ 1 boinc boinc     37140 Jun  3 20:56 runpilot2-wrapper.sh
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc       100 Jun  5 18:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 21:24:58] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 18:18 run_atlas
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc       105 Jun  5 18:18 job.xml
[2025-06-05 21:24:58] -rw-r--r-- 2 boinc boinc     15093 Jun  5 18:18 start_atlas.sh
[2025-06-05 21:24:58] drwxrwx--x 2 boinc boinc      4096 Jun  5 18:18 shared
[2025-06-05 21:24:58] -rw-r--r-- 2 boinc boinc    508884 Jun  5 18:18 input.tar.gz
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc      9360 Jun  5 18:18 init_data.xml
[2025-06-05 21:24:58] -rw-r--r-- 2 boinc boinc 218652790 Jun  5 18:18 EVNT.45006593._001827.pool.root.1
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc         0 Jun  5 18:18 boinc_lockfile
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc      2525 Jun  5 18:18 pandaJob.out
[2025-06-05 21:24:58] -rw------- 1 boinc boinc    987543 Jun  5 18:18 agis_schedconf.cvmfs.json
[2025-06-05 21:24:58] drwx------ 4 boinc boinc      4096 Jun  5 18:18 pilot3
[2025-06-05 21:24:58] -rw------- 1 boinc boinc 181824374 Jun  5 21:24 HITS.45006595._045549.pool.root.1
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc       530 Jun  5 21:24 boinc_task_state.xml
[2025-06-05 21:24:58] -rw------- 1 boinc boinc        95 Jun  5 21:24 pilot_heartbeat.json
[2025-06-05 21:24:58] -rw------- 1 boinc boinc      1022 Jun  5 21:24 memory_monitor_summary.json
[2025-06-05 21:24:58] -rw------- 1 boinc boinc   1598969 Jun  5 21:24 agis_ddmendpoints.agis.ALL.json
[2025-06-05 21:24:58] -rw------- 1 boinc boinc    425457 Jun  5 21:24 log.45006595._045549.job.log.tgz.1
[2025-06-05 21:24:58] -rw------- 1 boinc boinc      7681 Jun  5 21:24 heartbeat.json
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 21:24 boinc_mmap_file
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc        28 Jun  5 21:24 wrapper_checkpoint.txt
[2025-06-05 21:24:58] -rw------- 1 boinc boinc      4573 Jun  5 21:24 pilotlog.txt
[2025-06-05 21:24:58] -rw------- 1 boinc boinc   1061810 Jun  5 21:24 log.45006595._045549.job.log.1
[2025-06-05 21:24:58] -rw------- 1 boinc boinc       357 Jun  5 21:24 output.list
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc       620 Jun  5 21:24 runtime_log
[2025-06-05 21:24:58] -rw------- 1 boinc boinc   1505280 Jun  5 21:24 result.tar.gz
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc      8954 Jun  5 21:24 runtime_log.err
[2025-06-05 21:24:58] -rw------- 1 boinc boinc       652 Jun  5 21:24 EHoMDmNrng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdBmKDmCgvTqn.diag
[2025-06-05 21:24:58] -rw-rw-r-- 1 boinc boinc     21330 Jun  5 21:24 stderr.txt
[2025-06-05 21:24:58] HITS file was successfully produced:
[2025-06-05 21:24:58] -rw------- 1 boinc boinc 181824374 Jun  5 21:24 shared/HITS.pool.root.1
[2025-06-05 21:24:58]  *** Contents of shared directory: ***
[2025-06-05 21:24:58] total 393092
[2025-06-05 21:24:58] -rw-r--r-- 2 boinc boinc     15093 Jun  5 18:18 start_atlas.sh
[2025-06-05 21:24:58] -rw-r--r-- 2 boinc boinc    508884 Jun  5 18:18 input.tar.gz
[2025-06-05 21:24:58] -rw-r--r-- 2 boinc boinc 218652790 Jun  5 18:18 ATLAS.root_0
[2025-06-05 21:24:58] -rw------- 1 boinc boinc 181824374 Jun  5 21:24 HITS.pool.root.1
[2025-06-05 21:24:58] -rw------- 1 boinc boinc   1505280 Jun  5 21:24 result.tar.gz
21:24:59 (1307038): run_atlas exited; CPU time 37350.362772
21:24:59 (1307038): called boinc_finish(0)

</stderr_txt>
]]>

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