Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 07:57:58 (13612): Detected: vboxwrapper 26206
2025-06-04 07:57:58 (13612): Detected: BOINC client v8.0.2
2025-06-04 07:57:59 (13612): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-04 07:57:59 (13612): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 07:57:59 (13612): Create VM. (boinc_97a7bccb30cd1dec, slot#0)
2025-06-04 07:58:00 (13612): Setting Memory Size for VM. (4800MB)
2025-06-04 07:58:00 (13612): Setting CPU Count for VM. (8)
2025-06-04 07:58:00 (13612): Setting Chipset Options for VM.
2025-06-04 07:58:01 (13612): Setting Graphics Controller Options for VM.
2025-06-04 07:58:01 (13612): Setting Boot Options for VM.
2025-06-04 07:58:01 (13612): Setting Network Configuration for NAT.
2025-06-04 07:58:01 (13612): Enabling VM Network Access.
2025-06-04 07:58:02 (13612): Disabling USB Support for VM.
2025-06-04 07:58:02 (13612): Disabling COM Port Support for VM.
2025-06-04 07:58:02 (13612): Disabling LPT Port Support for VM.
2025-06-04 07:58:02 (13612): Disabling Audio Support for VM.
2025-06-04 07:58:03 (13612): Disabling Clipboard Support for VM.
2025-06-04 07:58:03 (13612): Disabling Drag and Drop Support for VM.
2025-06-04 07:58:03 (13612): Adding storage controller(s) to VM.
2025-06-04 07:58:04 (13612): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 07:58:06 (13612): Adding VirtualBox Guest Additions to VM.
2025-06-04 07:58:07 (13612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 07:58:07 (13612): forwarding host port 54519 to guest port 80
2025-06-04 07:58:07 (13612): Enabling remote desktop for VM.
2025-06-04 07:58:07 (13612): Required extension pack not installed, remote desktop not enabled.
2025-06-04 07:58:07 (13612): Enabling shared directory for VM.
2025-06-04 07:58:08 (13612): Starting VM using VBoxManage interface. (boinc_97a7bccb30cd1dec, slot#0)
2025-06-04 07:58:14 (13612): Successfully started VM. (PID = '19900')
2025-06-04 07:58:14 (13612): Reporting VM Process ID to BOINC.
2025-06-04 07:58:14 (13612): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-04 07:58:14 (13612): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 07:58:14 (13612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 07:58:14 (13612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 07:58:14 (13612): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 07:58:14 (13612): Detected: Web Application Enabled (http://localhost:54519)
2025-06-04 07:58:14 (13612): Preference change detected
2025-06-04 07:58:14 (13612): Setting CPU throttle for VM. (100%)
2025-06-04 07:58:14 (13612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 07:58:16 (13612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 07:58:16 (13612): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 07:58:18 (13612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 07:58:18 (13612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 07:58:18 (13612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 07:58:25 (13612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 07:58:25 (13612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 07:58:29 (13612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000132 main     Log opened 2025-06-04T07:58:27.570563000Z
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000244 main     OS Product: Linux
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000278 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000300 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000322 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000323 main     Process ID: 1364
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000323 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 07:58:29 (13612): Guest Log: 00:00:00.000905 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 07:58:29 (13612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 07:58:29 (13612): Guest Log: [INFO] Mounting shared directory
2025-06-04 07:58:29 (13612): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 07:58:39 (13612): Guest Log: 00:00:10.004327 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 148 792 000ns (GuestNow=1 749 020 319 423 468 000 ns GuestLast=1 749 023 907 572 260 000 ns fSetTimeLastLoop=true )
2025-06-04 07:59:01 (13612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 07:59:01 (13612): Guest Log: [INFO] Detected branch: prod
2025-06-04 07:59:04 (13612): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 07:59:04 (13612): Guest Log: Copying input files
2025-06-04 07:59:06 (13612): Guest Log: Copied input files into RunAtlas.
2025-06-04 07:59:06 (13612): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 07:59:06 (13612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 07:59:06 (13612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 07:59:06 (13612): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 07:59:33 (13612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 07:59:36 (13612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 07:59:36 (13612): Guest Log: 2.6.3.0 1649 0 29984 146771 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 07:59:36 (13612): Guest Log: copied the webapp to /var/www
2025-06-04 07:59:36 (13612): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 07:59:36 (13612): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 07:59:38 (13612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 07:59:38 (13612): Guest Log:  *** Starting ATLAS job. (PandaID=6678071295 taskID=45006595) ***
2025-06-04 08:42:01 (13612): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 09:17:50 (13612): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 09:17:59 (13612): Guest Log: 00:43:40.613783 timesync vgsvcTimeSyncWorker: Radical host time change: 2 158 981 000 000ns (HostNow=1 749 025 078 991 000 000 ns HostLast=1 749 022 920 010 000 000 ns)
2025-06-04 09:18:09 (13612): Guest Log: 00:43:50.614154 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 158 959 257 000ns (GuestNow=1 749 025 088 991 627 000 ns GuestLast=1 749 022 930 032 370 000 ns fSetTimeLastLoop=true )
2025-06-04 09:44:54 (13612): Guest Log:  *** Job finished ***
2025-06-04 09:44:54 (13612): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:40,047 | INFO     | [data] queue_monitor thread has finished
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:44,630 | INFO     | job.realtimelogging is not enabled
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:45,656 | INFO     | [payload] run_realtimelog thread has finished
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:47,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702817277760)>', '<ExcThread(monitor, started 139701923079936)>']
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:48,230 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:48,230 | INFO     | [monitor] control thread has ended
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,577 | INFO     | all workflow threads have been joined
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,577 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,577 | INFO     | traces error code: 0
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,647 [wrapper] ==== pilot stdout END ====
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,651 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,655 [wrapper] pilotpid: 6039
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,659 [wrapper] Pilot exit status: 0
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,757 [wrapper] pandaids: 6678071295
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,782 [wrapper] cleanup supervisor_pilot  1250 6040
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,786 [wrapper] Test setup, not cleaning
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,790 [wrapper] apfmon messages muted
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,794 [wrapper] ==== wrapper stdout END ====
2025-06-04 09:44:54 (13612): Guest Log: 2025-06-04 08:44:52,798 [wrapper] ==== wrapper stderr END ====
2025-06-04 09:44:54 (13612): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 09:44:54 (13612): Guest Log:     "exeErrorCode": 0,
2025-06-04 09:44:54 (13612): Guest Log:     "exeErrorDiag": "",
2025-06-04 09:44:54 (13612): Guest Log:     "pilotErrorCode": 0,
2025-06-04 09:44:54 (13612): Guest Log:     "pilotErrorDiag": "",
2025-06-04 09:44:54 (13612): Guest Log:  *** Listing of results directory ***
2025-06-04 09:44:54 (13612): Guest Log: total 176048
2025-06-04 09:44:54 (13612): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 20:36 pilot3.tar.gz
2025-06-04 09:44:54 (13612): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 20:40 queuedata.json
2025-06-04 09:44:54 (13612): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 20:41 runpilot2-wrapper.sh
2025-06-04 09:44:54 (13612): Guest Log: -rwxr-xr-x. 1 atlas atlas      9131 Jun  4 06:59 init_data.xml
2025-06-04 09:44:54 (13612): Guest Log: -rwxr-xr-x. 1 atlas atlas    508882 Jun  4 06:59 input.tar.gz
2025-06-04 09:44:54 (13612): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 06:59 start_atlas.sh
2025-06-04 09:44:54 (13612): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 06:59 EVNT.45006593._001811.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 09:44:54 (13612): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  4 06:59 pandaJob.out
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas    986745 Jun  4 07:01 agis_schedconf.cvmfs.json
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 07:01 agis_ddmendpoints.agis.ALL.json
2025-06-04 09:44:54 (13612): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 07:01 pilot3
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas 175197400 Jun  4 08:43 HITS.45006595._045157.pool.root.1
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas      1033 Jun  4 08:43 memory_monitor_summary.json
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas    305343 Jun  4 08:43 log.45006595._045157.job.log.tgz.1
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas        97 Jun  4 08:44 pilot_heartbeat.json
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas      7731 Jun  4 08:44 heartbeat.json
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas      4485 Jun  4 08:44 pilotlog.txt
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas    352071 Jun  4 08:44 log.45006595._045157.job.log.1
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 08:44 output.list
2025-06-04 09:44:54 (13612): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 08:44 runtime_log
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas    675840 Jun  4 08:44 result.tar.gz
2025-06-04 09:44:54 (13612): Guest Log: -rw-r--r--. 1 atlas atlas      8583 Jun  4 08:44 runtime_log.err
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas       650 Jun  4 08:44 gtrNDm1cng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmo5lKDmTTx92m.diag
2025-06-04 09:44:54 (13612): Guest Log: Looking for outputfile HITS.45006595._045157.pool.root.1
2025-06-04 09:44:54 (13612): Guest Log: HITS file was successfully produced
2025-06-04 09:44:54 (13612): Guest Log: -rw-------. 1 atlas atlas 175197400 Jun  4 08:43 /home/atlas/RunAtlas/HITS.45006595._045157.pool.root.1
2025-06-04 09:44:54 (13612): Guest Log: Successfully finished the ATLAS job!
2025-06-04 09:44:54 (13612): Guest Log: Copying the results back to the shared directory!
2025-06-04 09:44:55 (13612): Guest Log:  *** Contents of shared directory: ***
2025-06-04 09:44:55 (13612): Guest Log: total 379920
2025-06-04 09:44:55 (13612): Guest Log: -rwxrwxrwx. 1 root root 212622468 Jun  4 06:57 ATLAS.root_0
2025-06-04 09:44:55 (13612): Guest Log: -rwxrwxrwx. 1 root root 175197400 Jun  4 08:44 HITS.pool.root.1
2025-06-04 09:44:55 (13612): Guest Log: -rwxrwxrwx. 1 root root      9131 Jun  4 06:57 init_data.xml
2025-06-04 09:44:55 (13612): Guest Log: -rwxrwxrwx. 1 root root    508882 Jun  4 03:32 input.tar.gz
2025-06-04 09:44:55 (13612): Guest Log: -rwxrwxrwx. 1 root root    675840 Jun  4 08:44 result.tar.gz
2025-06-04 09:44:55 (13612): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 03:32 start_atlas.sh
2025-06-04 09:44:55 (13612): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 09:44:55 (13612): VM Completion File Detected.
2025-06-04 09:44:55 (13612): Powering off VM.
2025-06-04 09:44:56 (13612): Successfully stopped VM.
2025-06-04 09:44:56 (13612): Deregistering VM. (boinc_97a7bccb30cd1dec, slot#0)
2025-06-04 09:44:56 (13612): Removing network bandwidth throttle group from VM.
2025-06-04 09:44:56 (13612): Removing VM from VirtualBox.
09:45:02 (13612): called boinc_finish(0)

</stderr_txt>
]]>

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