Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:44:55 (4044893): wrapper (7.7.26015): starting
20:44:55 (4044893): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 20:44:55] Arguments: --nthreads 12
[2025-06-03 20:44:55] Threads: 12
[2025-06-03 20:44:55] Checking for CVMFS
[2025-06-03 20:44:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:44:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:44:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:44:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:44:56] 2.11.5.0 2633 50370 342864 146767 1 423 41332373 45568000 12889 130560 0 403207683 99.789 262177033 21127 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-06-03 20:44:56] CVMFS is ok
[2025-06-03 20:44:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:44:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:44:56] Further information can be found at the LHC@home message board.
[2025-06-03 20:44:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:44:56] Checking for apptainer binary...
[2025-06-03 20:44:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:44:56] Running /usr/bin/apptainer --version
[2025-06-03 20:44:56] apptainer version 1.4.0-1.el9
[2025-06-03 20:44:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:44:57] wns0113.triumf.lcg
[2025-06-03 20:44:57] apptainer works
[2025-06-03 20:44:57] Set ATHENA_PROC_NUMBER=12
[2025-06-03 20:44:57] Set ATHENA_CORE_NUMBER=12
[2025-06-03 20:44:57] Starting ATLAS job with PandaID=6678244611
[2025-06-03 20:44:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 20:50:06]  *** The last 200 lines of the pilot log: ***
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 20:50:06] 2025-06-04 03:49:50,917 | WARNING  | wrong length of table data, x=[1749008818.0], y=[897.0] (must be same and length>=4)
[2025-06-03 20:50:06] 2025-06-04 03:49:50,918 | INFO     | ..............................
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . Timing measurements:
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . get job = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . initial setup = 3 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . payload setup = 20 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . stage-in = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . payload execution = 49 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . stage-out = 2 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . log creation = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | ..............................
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 20:50:06] 2025-06-04 03:49:50,930 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678244611/pilotlog.txt
[2025-06-03 20:50:06] 2025-06-04 03:49:50,962 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 20:50:06] - Log from pilotlog.txt -
[2025-06-03 20:50:06] 2025-06-04 03:49:50,904 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 20:50:06] 2025-06-04 03:49:50,913 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6678244611/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 20:50:06] 2025-06-04 03:49:50,915 | INFO     | extracted standard info from prmon json
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 20:50:06] 2025-06-04 03:49:50,917 | WARNING  | wrong length of table data, x=[1749008818.0], y=[897.0] (must be same and length>=4)
[2025-06-03 20:50:06] 2025-06-04 03:49:50,918 | INFO     | ..............................
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . Timing measurements:
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . get job = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . initial setup = 3 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . payload setup = 20 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . stage-in = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . payload execution = 49 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . stage-out = 2 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . log creation = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | ..............................
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 20:50:06] 2025-06-04 03:49:50,930 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678244611/pilotlog.txt
[2025-06-03 20:50:06] 2025-06-04 03:49:50,962 | WARNING  | 
[2025-06-03 20:50:06] [begin log extracts]
[2025-06-03 20:50:06] - Log from pilotlog.txt -
[2025-06-03 20:50:06] 2025-06-04 03:49:50,904 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 20:50:06] 2025-06-04 03:49:50,913 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6678244611/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 20:50:06] 2025-06-04 03:49:50,915 | INFO     | extracted standard info from prmon json
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 20:50:06] 2025-06-04 03:49:50,916 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 20:50:06] 2025-06-04 03:49:50,917 | WARNING  | wrong length of table data, x=[1749008818.0], y=[897.0] (must be same and length>=4)
[2025-06-03 20:50:06] 2025-06-04 03:49:50,918 | INFO     | ..............................
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . Timing measurements:
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . get job = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . initial setup = 3 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . payload setup = 20 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . stage-in = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . payload execution = 49 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . stage-out = 2 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | . log creation = 0 s
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | ..............................
[2025-06-03 20:50:06] 2025-06-04 03:49:50,921 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 20:50:06] 2025-06-04 03:49:50,930 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678244611/pilotlog.txt
[2025-06-03 20:50:06] [end log extracts]
[2025-06-03 20:50:06] 2025-06-04 03:49:50,963 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 20:50:06] 2025-06-04 03:49:50,964 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 20:50:06] 2025-06-04 03:49:51,385 | INFO     | 
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | job summary report
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | --------------------------------------------------
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | PanDA job id: 6678244611
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | task id: 45006595
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 20:47:21,610 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | pilot state: failed 
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | transexitcode: 65
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | exeerrorcode: 65
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | exitcode: 65
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | cpuconsumptiontime: 20 s
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | nevents: 0
[2025-06-03 20:50:06] 2025-06-04 03:49:51,386 | INFO     | neventsw: 0
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | pid: 4055151
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | pgrp: 4055151
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | corecount: 12
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | event service: False
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | sizes: {0: 2405010, 1: 2405209, 12: 2405209, 21: 2405443, 23: 2405471, 74: 2428676, 75: 2428780, 78: 2433043, 79: 2433071, 213: 2433241}
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | --------------------------------------------------
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | 
[2025-06-03 20:50:06] 2025-06-04 03:49:51,387 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,420 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | job 6678244611 has completed (purged errors)
[2025-06-03 20:50:06] 2025-06-04 03:49:51,421 | INFO     | overall cleanup function is called
[2025-06-03 20:50:06] 2025-06-04 03:49:51,810 | INFO     | PID=4048500 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-03 20:50:06] 2025-06-04 03:49:51,811 | INFO     | .. there are 28 such processes running
[2025-06-03 20:50:06] 2025-06-04 03:49:52,428 | INFO     | --- collectZombieJob: --- 10, [4055151]
[2025-06-03 20:50:06] 2025-06-04 03:49:52,429 | INFO     | zombie collector waiting for pid 4055151
[2025-06-03 20:50:06] 2025-06-04 03:49:52,429 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 20:50:06] 2025-06-04 03:49:52,429 | INFO     | collected zombie processes
[2025-06-03 20:50:06] 2025-06-04 03:49:52,429 | INFO     | will attempt to kill all subprocesses of pid=4055151
[2025-06-03 20:50:06] 2025-06-04 03:49:52,677 | INFO     | process IDs to be killed: [4055151] (in reverse order)
[2025-06-03 20:50:06] 2025-06-04 03:49:52,761 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 20:50:06] 2025-06-04 03:49:52,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 20:50:06] 2025-06-04 03:49:52,771 | INFO     | did not find any defunct processes belonging to 4055151
[2025-06-03 20:50:06] 2025-06-04 03:49:52,779 | INFO     | did not find any defunct processes belonging to 4055151
[2025-06-03 20:50:06] 2025-06-04 03:49:52,780 | INFO     | ready for new job
[2025-06-03 20:50:06] 2025-06-04 03:49:52,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 20:50:06] 2025-06-04 03:49:52,781 | INFO     | **************************************
[2025-06-03 20:50:06] 2025-06-04 03:49:52,782 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 20:50:06] 2025-06-04 03:49:52,782 | INFO     | **************************************
[2025-06-03 20:50:06] 2025-06-04 03:49:52,782 | INFO     | 
[2025-06-03 20:50:06] 2025-06-04 03:49:52,784 | INFO     | architecture information:
[2025-06-03 20:50:06] 2025-06-04 03:49:52,784 | INFO     | executing command: cat /etc/os-release
[2025-06-03 20:50:06] 2025-06-04 03:49:52,800 | INFO     | cat /etc/os-release:
[2025-06-03 20:50:06] NAME="CentOS Linux"
[2025-06-03 20:50:06] VERSION="7 (Core)"
[2025-06-03 20:50:06] ID="centos"
[2025-06-03 20:50:06] ID_LIKE="rhel fedora"
[2025-06-03 20:50:06] VERSION_ID="7"
[2025-06-03 20:50:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 20:50:06] ANSI_COLOR="0;31"
[2025-06-03 20:50:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 20:50:06] HOME_URL="https://www.centos.org/"
[2025-06-03 20:50:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 20:50:06] 
[2025-06-03 20:50:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 20:50:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 20:50:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 20:50:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 20:50:06] 
[2025-06-03 20:50:06] 2025-06-04 03:49:52,800 | INFO     | **************************************
[2025-06-03 20:50:06] 2025-06-04 03:49:52,812 | INFO     | 260s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-03 20:50:06] 2025-06-04 03:49:53,304 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 20:50:06] 2025-06-04 03:49:53,450 | INFO     | sufficient remaining disk space (2018540257280 B)
[2025-06-03 20:50:06] 2025-06-04 03:49:53,450 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 20:50:06] 2025-06-04 03:49:53,450 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 20:50:06] 2025-06-04 03:49:53,450 | INFO     | update_server=False
[2025-06-03 20:50:06] 2025-06-04 03:49:53,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 20:50:06] 2025-06-04 03:49:53,451 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 20:50:06] 2025-06-04 03:49:53,818 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 20:50:06] 2025-06-04 03:49:53,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 20:50:06] 2025-06-04 03:49:53,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 20:50:06] 2025-06-04 03:49:53,823 | INFO     | all payload control threads have been joined
[2025-06-03 20:50:06] 2025-06-04 03:49:53,945 | INFO     | all job control threads have been joined
[2025-06-03 20:50:06] 2025-06-04 03:49:54,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:50:06] 2025-06-04 03:49:54,083 | INFO     | aborting loop
[2025-06-03 20:50:06] 2025-06-04 03:49:54,205 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 20:50:06] 2025-06-04 03:49:54,457 | INFO     | [job] retrieve thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:54,533 | INFO     | all data control threads have been joined
[2025-06-03 20:50:06] 2025-06-04 03:49:54,829 | INFO     | [payload] control thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:54,951 | INFO     | [job] control thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:54,954 | INFO     | [job] validate thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,089 | INFO     | [job] job monitor thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,096 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,250 | INFO     | [data] copytool_in thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,430 | INFO     | [payload] failed_post thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,440 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,457 | INFO     | [data] copytool_out thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,467 | INFO     | [payload] validate_post thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,539 | INFO     | [data] control thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,763 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:55,776 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:56,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 20:50:06] 2025-06-04 03:49:57,404 | INFO     | [job] queue monitor thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:58,214 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 20:50:06] 2025-06-04 03:49:59,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974497634112)>', '<ExcThread(monitor, started 139973965629184)>']
[2025-06-03 20:50:06] 2025-06-04 03:49:59,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 20:50:06] 2025-06-04 03:49:59,853 | INFO     | [monitor] control thread has ended
[2025-06-03 20:50:06] 2025-06-04 03:50:04,787 | INFO     | all workflow threads have been joined
[2025-06-03 20:50:06] 2025-06-04 03:50:04,788 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 20:50:06] 2025-06-04 03:50:04,788 | INFO     | traces error code: 0
[2025-06-03 20:50:06] 2025-06-04 03:50:04,788 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 20:50:06] 2025-06-04 03:50:04,966 [wrapper] ==== pilot stdout END ====
[2025-06-03 20:50:06] 2025-06-04 03:50:04,998 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 20:50:06] 2025-06-04 03:50:05,020 [wrapper] pilotpid: 4048500
[2025-06-03 20:50:06] 2025-06-04 03:50:05,067 [wrapper] Pilot exit status: 0
[2025-06-03 20:50:06] 2025-06-04 03:50:05,206 [wrapper] pandaids: 6678244611
[2025-06-03 20:50:06] 2025-06-04 03:50:05,442 [wrapper] cleanup supervisor_pilot 4048506 4048501
[2025-06-03 20:50:06] 2025-06-04 03:50:05,453 [wrapper] Test setup, not cleaning
[2025-06-03 20:50:06] 2025-06-04 03:50:05,471 [wrapper] apfmon messages muted
[2025-06-03 20:50:06] 2025-06-04 03:50:05,505 [wrapper] ==== wrapper stdout END ====
[2025-06-03 20:50:06] 2025-06-04 03:50:05,574 [wrapper] ==== wrapper stderr END ====
[2025-06-03 20:50:06]  *** Error codes and diagnostics ***
[2025-06-03 20:50:06]     "exeErrorCode": 65,
[2025-06-03 20:50:06]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 20:50:06]     "pilotErrorCode": 1305,
[2025-06-03 20:50:06]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 20:50:06]  *** Listing of results directory ***
[2025-06-03 20:50:06] total 214160
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc    495897 Jun  3 17:59 pilot3.tar.gz
[2025-06-03 20:50:06] -rwx------. 1 boinc boinc     37140 Jun  3 18:04 runpilot2-wrapper.sh
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc      5111 Jun  3 18:04 queuedata.json
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc       100 Jun  3 20:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 20:50:06] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 20:44 run_atlas
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc       105 Jun  3 20:44 job.xml
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc      6597 Jun  3 20:44 init_data.xml
[2025-06-03 20:50:06] -rw-r--r--. 2 boinc boinc 215259135 Jun  3 20:44 EVNT.45006593._001989.pool.root.1
[2025-06-03 20:50:06] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:44 start_atlas.sh
[2025-06-03 20:50:06] drwxrwx--x. 2 boinc boinc      4096 Jun  3 20:44 shared
[2025-06-03 20:50:06] -rw-r--r--. 2 boinc boinc    508881 Jun  3 20:44 input.tar.gz
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc         0 Jun  3 20:44 boinc_lockfile
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc      2525 Jun  3 20:44 pandaJob.out
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc    986077 Jun  3 20:45 agis_schedconf.cvmfs.json
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc   1603667 Jun  3 20:45 agis_ddmendpoints.agis.ALL.json
[2025-06-03 20:50:06] drwx------. 4 boinc boinc      4096 Jun  3 20:45 pilot3
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc       524 Jun  3 20:47 boinc_task_state.xml
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc       952 Jun  3 20:47 memory_monitor_summary.json
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc     21652 Jun  3 20:47 log.45006595._049616.job.log.tgz.1
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc        95 Jun  3 20:49 pilot_heartbeat.json
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc      8335 Jun  3 20:49 heartbeat.json
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc      4466 Jun  3 20:50 pilotlog.txt
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc      8192 Jun  3 20:50 boinc_mmap_file
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc     80017 Jun  3 20:50 log.45006595._049616.job.log.1
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc       188 Jun  3 20:50 output.list
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc       620 Jun  3 20:50 runtime_log
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc    122880 Jun  3 20:50 result.tar.gz
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc        23 Jun  3 20:50 wrapper_checkpoint.txt
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc      8484 Jun  3 20:50 runtime_log.err
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc       645 Jun  3 20:50 iFZMDmQjrg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmeRaKDm39ufdn.diag
[2025-06-03 20:50:06] -rw-r--r--. 1 boinc boinc     21765 Jun  3 20:50 stderr.txt
[2025-06-03 20:50:06] No HITS result produced
[2025-06-03 20:50:06]  *** Contents of shared directory: ***
[2025-06-03 20:50:06] total 210856
[2025-06-03 20:50:06] -rw-r--r--. 2 boinc boinc 215259135 Jun  3 20:44 ATLAS.root_0
[2025-06-03 20:50:06] -rw-r--r--. 2 boinc boinc     15093 Jun  3 20:44 start_atlas.sh
[2025-06-03 20:50:06] -rw-r--r--. 2 boinc boinc    508881 Jun  3 20:44 input.tar.gz
[2025-06-03 20:50:06] -rw-------. 1 boinc boinc    122880 Jun  3 20:50 result.tar.gz
20:50:08 (4044893): run_atlas exited; CPU time 30.981587
20:50:08 (4044893): called boinc_finish(0)

</stderr_txt>
]]>

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