Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:25:03 (3454): wrapper (7.7.26015): starting
14:25:03 (3454): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 14:25:03] Arguments: --nthreads 8
[2025-06-04 14:25:03] Threads: 8
[2025-06-04 14:25:03] Checking for CVMFS
[2025-06-04 14:25:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:25:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:25:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:25:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:25:05] 2.11.2.0 25755 33386 100112 146780 0 59 19359675 25165825 3523 130560 0 18741197 99.798 18543629 2377 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 14:25:05] CVMFS is ok
[2025-06-04 14:25:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:25:05] Checking for apptainer binary...
[2025-06-04 14:25:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:25:05] Running /usr/bin/apptainer --version
[2025-06-04 14:25:05] apptainer version 1.3.2-1.el7
[2025-06-04 14:25:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:25:16] cg-vwn458.simple-grid.lan
[2025-06-04 14:25:16] apptainer works
[2025-06-04 14:25:16] Set ATHENA_PROC_NUMBER=8
[2025-06-04 14:25:16] Set ATHENA_CORE_NUMBER=8
[2025-06-04 14:25:16] Starting ATLAS job with PandaID=6678152422
[2025-06-04 14:25:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:00:05]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:00:05] 2025-06-04 15:56:21,333 | INFO     | extracted standard info from prmon json
[2025-06-04 18:00:05] 2025-06-04 15:56:21,333 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:00:05] 2025-06-04 15:56:21,333 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:00:05] 2025-06-04 15:56:21,334 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:00:05] 2025-06-04 15:56:21,334 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:00:05] 2025-06-04 15:56:21,338 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:00:05] 2025-06-04 15:56:21,338 | INFO     | sum of square deviations: 2299168690.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,340 | INFO     | sum of deviations: 39947116543.00008
[2025-06-04 18:00:05] 2025-06-04 15:56:21,340 | INFO     | mean x: 1749046553.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,340 | INFO     | mean y: 2455019.9846153846
[2025-06-04 18:00:05] 2025-06-04 15:56:21,341 | INFO     | -- intersect: -30386514173.843246
[2025-06-04 18:00:05] 2025-06-04 15:56:21,341 | INFO     | intersect: -30386514173.843246
[2025-06-04 18:00:05] 2025-06-04 15:56:21,341 | INFO     | chi2: 6.826586426619864
[2025-06-04 18:00:05] 2025-06-04 15:56:21,341 | INFO     | sum of square deviations: 2126802667.5
[2025-06-04 18:00:05] 2025-06-04 15:56:21,343 | INFO     | sum of deviations: 52028256823.00002
[2025-06-04 18:00:05] 2025-06-04 15:56:21,343 | INFO     | mean x: 1749046400.5
[2025-06-04 18:00:05] 2025-06-04 15:56:21,343 | INFO     | mean y: 2465472.6
[2025-06-04 18:00:05] 2025-06-04 15:56:21,343 | INFO     | -- intersect: -42784689495.34333
[2025-06-04 18:00:05] 2025-06-04 15:56:21,343 | INFO     | intersect: -42784689495.34333
[2025-06-04 18:00:05] 2025-06-04 15:56:21,344 | INFO     | chi2: 6.129218959216345
[2025-06-04 18:00:05] 2025-06-04 15:56:21,344 | INFO     | current chi2=6.129218959216345 (change=10.21546383246795 %)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,344 | INFO     | right removable region: 189
[2025-06-04 18:00:05] 2025-06-04 15:56:21,344 | INFO     | sum of square deviations: 2126802667.5
[2025-06-04 18:00:05] 2025-06-04 15:56:21,346 | INFO     | sum of deviations: -25873937632.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,346 | INFO     | mean x: 1749046705.5
[2025-06-04 18:00:05] 2025-06-04 15:56:21,346 | INFO     | mean y: 2513192.7789473683
[2025-06-04 18:00:05] 2025-06-04 15:56:21,346 | INFO     | -- intersect: 21280803870.662003
[2025-06-04 18:00:05] 2025-06-04 15:56:21,346 | INFO     | intersect: 21280803870.662003
[2025-06-04 18:00:05] 2025-06-04 15:56:21,347 | INFO     | chi2: 2.171158629298181
[2025-06-04 18:00:05] 2025-06-04 15:56:21,347 | INFO     | current chi2=2.171158629298181 (change=68.19554468933583 %)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,347 | INFO     | sum of square deviations: 1963274020.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,348 | INFO     | sum of deviations: -54171953471.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,349 | INFO     | mean x: 1749046858.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,349 | INFO     | mean y: 2539337.108108108
[2025-06-04 18:00:05] 2025-06-04 15:56:21,349 | INFO     | -- intersect: 48263395460.582275
[2025-06-04 18:00:05] 2025-06-04 15:56:21,349 | INFO     | intersect: 48263395460.582275
[2025-06-04 18:00:05] 2025-06-04 15:56:21,349 | INFO     | chi2: 0.9935502916945341
[2025-06-04 18:00:05] 2025-06-04 15:56:21,349 | INFO     | current chi2=0.9935502916945341 (change=54.238705625314175 %)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,350 | INFO     | sum of square deviations: 1808350185.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,351 | INFO     | sum of deviations: -54337339476.99999
[2025-06-04 18:00:05] 2025-06-04 15:56:21,351 | INFO     | mean x: 1749047010.5
[2025-06-04 18:00:05] 2025-06-04 15:56:21,351 | INFO     | mean y: 2539449.0222222223
[2025-06-04 18:00:05] 2025-06-04 15:56:21,351 | INFO     | -- intersect: 52557936052.568054
[2025-06-04 18:00:05] 2025-06-04 15:56:21,351 | INFO     | intersect: 52557936052.568054
[2025-06-04 18:00:05] 2025-06-04 15:56:21,352 | INFO     | chi2: 0.9673706710497281
[2025-06-04 18:00:05] 2025-06-04 15:56:21,352 | INFO     | current chi2=0.9673706710497281 (change=2.6349567670254332 %)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,352 | INFO     | left removable region: 30
[2025-06-04 18:00:05] 2025-06-04 15:56:21,352 | INFO     | sum of square deviations: 1246386160.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,353 | INFO     | sum of deviations: -25070990972.00001
[2025-06-04 18:00:05] 2025-06-04 15:56:21,353 | INFO     | mean x: 1749047285.0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,354 | INFO     | mean y: 2535101.3018867923
[2025-06-04 18:00:05] 2025-06-04 15:56:21,354 | INFO     | -- intersect: 35184527728.55966
[2025-06-04 18:00:05] 2025-06-04 15:56:21,354 | INFO     | intersect: 35184527728.55966
[2025-06-04 18:00:05] 2025-06-04 15:56:21,354 | INFO     | chi2: 0.15361268143188445
[2025-06-04 18:00:05] 2025-06-04 15:56:21,354 | INFO     | -- intersect: 35184527728.55966
[2025-06-04 18:00:05] 2025-06-04 15:56:21,355 | INFO     | current memory leak: -20.11 B/s (using 159 data points, chi2=0.15)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,355 | INFO     | ..............................
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . Timing measurements:
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . get job = 0 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . initial setup = 5 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . payload setup = 172 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . stage-in = 0 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . payload execution = 12004 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . stage-out = 5 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | . log creation = 1 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,356 | INFO     | ..............................
[2025-06-04 18:00:05] 2025-06-04 15:56:21,479 | INFO     | 
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | job summary report
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | --------------------------------------------------
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | PanDA job id: 6678152422
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | task id: 45006595
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | errors: (none)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | pilot state: finished 
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | transexitcode: 0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | exeerrorcode: 0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,480 | INFO     | exeerrordiag: 
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | exitcode: 0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | exitmsg: OK
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | cpuconsumptiontime: 44499 s
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | nevents: 400
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | neventsw: 0
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | pid: 14565
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | pgrp: 14565
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | corecount: 8
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | event service: False
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | sizes: {0: 2396513, 1: 2397370, 2: 2397398, 13: 2397398, 23: 2397454, 34: 2397482, 45: 2397638, 56: 2397666, 66: 2397694, 77: 2397722, 88: 2397778, 92: 2398292, 98
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | --------------------------------------------------
[2025-06-04 18:00:05] 2025-06-04 15:56:21,481 | INFO     | 
[2025-06-04 18:00:05] 2025-06-04 15:56:21,482 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-04 18:00:05] 2025-06-04 15:56:21,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:00:05] 2025-06-04 15:56:21,517 | INFO     | job 6678152422 has completed (purged errors)
[2025-06-04 18:00:05] 2025-06-04 15:56:21,517 | INFO     | overall cleanup function is called
[2025-06-04 18:00:05] 2025-06-04 15:56:22,526 | INFO     | --- collectZombieJob: --- 10, [14565]
[2025-06-04 18:00:05] 2025-06-04 15:56:22,526 | INFO     | zombie collector waiting for pid 14565
[2025-06-04 18:00:05] 2025-06-04 15:56:22,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:00:05] 2025-06-04 15:56:22,527 | INFO     | collected zombie processes
[2025-06-04 18:00:05] 2025-06-04 15:56:22,527 | INFO     | will attempt to kill all subprocesses of pid=14565
[2025-06-04 18:00:05] 2025-06-04 15:56:22,623 | INFO     | process IDs to be killed: [14565] (in reverse order)
[2025-06-04 18:00:05] 2025-06-04 15:56:22,689 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:00:05] 2025-06-04 15:56:22,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:00:05] 2025-06-04 15:56:22,692 | INFO     | did not find any defunct processes belonging to 14565
[2025-06-04 18:00:05] 2025-06-04 15:56:22,696 | INFO     | did not find any defunct processes belonging to 14565
[2025-06-04 18:00:05] 2025-06-04 15:56:22,696 | INFO     | ready for new job
[2025-06-04 18:00:05] 2025-06-04 15:56:22,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:00:05] 2025-06-04 15:56:22,701 | INFO     | **************************************
[2025-06-04 18:00:05] 2025-06-04 15:56:22,702 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:00:05] 2025-06-04 15:56:22,702 | INFO     | **************************************
[2025-06-04 18:00:05] 2025-06-04 15:56:22,702 | INFO     | 
[2025-06-04 18:00:05] 2025-06-04 15:56:22,703 | INFO     | pilot is running in a VM
[2025-06-04 18:00:05] 2025-06-04 15:56:22,703 | INFO     | architecture information:
[2025-06-04 18:00:05] 2025-06-04 15:56:22,703 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:00:05] 2025-06-04 15:56:22,731 | INFO     | cat /etc/os-release:
[2025-06-04 18:00:05] NAME="CentOS Linux"
[2025-06-04 18:00:05] VERSION="7 (Core)"
[2025-06-04 18:00:05] ID="centos"
[2025-06-04 18:00:05] ID_LIKE="rhel fedora"
[2025-06-04 18:00:05] VERSION_ID="7"
[2025-06-04 18:00:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:00:05] ANSI_COLOR="0;31"
[2025-06-04 18:00:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:00:05] HOME_URL="https://www.centos.org/"
[2025-06-04 18:00:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:00:05] 
[2025-06-04 18:00:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:00:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:00:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:00:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:00:05] 
[2025-06-04 18:00:05] 2025-06-04 15:56:22,731 | INFO     | **************************************
[2025-06-04 18:00:05] 2025-06-04 15:56:23,236 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-04 18:00:05] 2025-06-04 15:56:23,287 | INFO     | sufficient remaining disk space (496776511488 B)
[2025-06-04 18:00:05] 2025-06-04 15:56:23,287 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:00:05] 2025-06-04 15:56:23,288 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:00:05] 2025-06-04 15:56:23,288 | INFO     | update_server=False
[2025-06-04 18:00:05] 2025-06-04 15:56:23,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:00:05] 2025-06-04 15:56:23,288 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:00:05] 2025-06-04 15:56:23,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:00:05] 2025-06-04 15:56:23,289 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:00:05] 2025-06-04 15:56:23,290 | INFO     | aborting loop
[2025-06-04 18:00:05] 2025-06-04 15:56:23,294 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:00:05] 2025-06-04 15:56:23,295 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:00:05] 2025-06-04 15:56:23,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:00:05] 2025-06-04 15:56:23,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:00:05] 2025-06-04 15:56:23,522 | INFO     | all job control threads have been joined
[2025-06-04 18:00:05] 2025-06-04 15:56:23,867 | INFO     | all data control threads have been joined
[2025-06-04 18:00:05] 2025-06-04 15:56:23,896 | INFO     | all payload control threads have been joined
[2025-06-04 18:00:05] 2025-06-04 15:56:24,294 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,295 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,296 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:00:05] 2025-06-04 15:56:24,455 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,512 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,528 | INFO     | [job] control thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,790 | INFO     | [job] validate thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,873 | INFO     | [data] control thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,902 | INFO     | [payload] control thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,913 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:24,940 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:25,295 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:25,458 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:25,580 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:25,745 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:28,438 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:00:05] 2025-06-04 15:56:29,711 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618102802240)>', '<ExcThread(monitor, started 140617212483328)>']
[2025-06-04 18:00:05] 2025-06-04 15:56:30,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:00:05] 2025-06-04 15:56:30,335 | INFO     | [monitor] control thread has ended
[2025-06-04 18:00:05] 2025-06-04 15:56:34,736 | INFO     | all workflow threads have been joined
[2025-06-04 18:00:05] 2025-06-04 15:56:34,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:00:05] 2025-06-04 15:56:34,737 | INFO     | traces error code: 0
[2025-06-04 18:00:05] 2025-06-04 15:56:34,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:00:05] 2025-06-04 15:56:35,047 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:00:05] 2025-06-04 15:56:35,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:00:05] 2025-06-04 15:56:35,120 [wrapper] pilotpid: 7951
[2025-06-04 18:00:05] 2025-06-04 15:56:35,146 [wrapper] Pilot exit status: 0
[2025-06-04 18:00:05] 2025-06-04 15:56:35,182 [wrapper] pandaids: 6678152422
[2025-06-04 18:00:05] 2025-06-04 15:56:35,271 [wrapper] cleanup supervisor_pilot 11810 7952
[2025-06-04 18:00:05] 2025-06-04 15:56:35,363 [wrapper] Test setup, not cleaning
[2025-06-04 18:00:05] 2025-06-04 15:56:35,454 [wrapper] apfmon messages muted
[2025-06-04 18:00:05] 2025-06-04 15:56:35,522 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:00:05] 2025-06-04 15:56:35,648 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:00:05]  *** Error codes and diagnostics ***
[2025-06-04 18:00:05]     "exeErrorCode": 0,
[2025-06-04 18:00:05]     "exeErrorDiag": "",
[2025-06-04 18:00:05]     "pilotErrorCode": 0,
[2025-06-04 18:00:05]     "pilotErrorDiag": "",
[2025-06-04 18:00:05]  *** Listing of results directory ***
[2025-06-04 18:00:05] total 386740
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:57 pilot3.tar.gz
[2025-06-04 18:00:05] -rwx------. 1 boinc boinc     37140 Jun  4 00:33 runpilot2-wrapper.sh
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc      5111 Jun  4 00:33 queuedata.json
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc       100 Jun  4 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:00:05] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 14:25 run_atlas
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc       105 Jun  4 14:25 job.xml
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc      6392 Jun  4 14:25 init_data.xml
[2025-06-04 18:00:05] -rw-r--r--. 2 boinc boinc 213692681 Jun  4 14:25 EVNT.45006593._001892.pool.root.1
[2025-06-04 18:00:05] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:25 start_atlas.sh
[2025-06-04 18:00:05] drwxrwx--x. 2 boinc boinc        68 Jun  4 14:25 shared
[2025-06-04 18:00:05] -rw-r--r--. 2 boinc boinc    508881 Jun  4 14:25 input.tar.gz
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc         0 Jun  4 14:25 boinc_lockfile
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc      2524 Jun  4 14:25 pandaJob.out
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc    986811 Jun  4 14:28 agis_schedconf.cvmfs.json
[2025-06-04 18:00:05] drwx------. 4 boinc boinc      4096 Jun  4 14:28 pilot3
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc 175621872 Jun  4 17:53 HITS.45006595._047199.pool.root.1
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc       531 Jun  4 17:53 boinc_task_state.xml
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc      1017 Jun  4 17:54 memory_monitor_summary.json
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc   1598969 Jun  4 17:54 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc    373385 Jun  4 17:54 log.45006595._047199.job.log.tgz.1
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc        95 Jun  4 17:55 pilot_heartbeat.json
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc      7695 Jun  4 17:56 heartbeat.json
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc      4540 Jun  4 17:56 pilotlog.txt
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc   1066616 Jun  4 17:56 log.45006595._047199.job.log.1
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc       357 Jun  4 17:56 output.list
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:56 runtime_log
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc   1464320 Jun  4 17:56 result.tar.gz
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc       656 Jun  4 17:56 Wm4KDm6Mpg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmLAaKDmBIt5gn.diag
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc      8673 Jun  4 17:56 runtime_log.err
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:00 boinc_mmap_file
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:00 wrapper_checkpoint.txt
[2025-06-04 18:00:05] -rw-r--r--. 1 boinc boinc     20506 Jun  4 18:00 stderr.txt
[2025-06-04 18:00:05] HITS file was successfully produced:
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc 175621872 Jun  4 17:53 shared/HITS.pool.root.1
[2025-06-04 18:00:05]  *** Contents of shared directory: ***
[2025-06-04 18:00:05] total 382144
[2025-06-04 18:00:05] -rw-r--r--. 2 boinc boinc 213692681 Jun  4 14:25 ATLAS.root_0
[2025-06-04 18:00:05] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:25 start_atlas.sh
[2025-06-04 18:00:05] -rw-r--r--. 2 boinc boinc    508881 Jun  4 14:25 input.tar.gz
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc 175621872 Jun  4 17:53 HITS.pool.root.1
[2025-06-04 18:00:05] -rw-------. 1 boinc boinc   1464320 Jun  4 17:56 result.tar.gz
18:00:07 (3454): run_atlas exited; CPU time 44662.286862
18:00:07 (3454): called boinc_finish(0)

</stderr_txt>
]]>

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