Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
05:04:13 (3208052): wrapper (7.7.26015): starting
05:04:13 (3208052): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 05:04:13] Arguments: --nthreads 12
[2025-06-04 05:04:13] Threads: 12
[2025-06-04 05:04:13] Checking for CVMFS
[2025-06-04 05:04:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:04:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:04:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:04:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:04:15] 2.12.7.0 29207 1465 73368 146768 0 187 3654051 4096001 11345 130560 17 18903997 99.999 390230 152 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 05:04:15] CVMFS is ok
[2025-06-04 05:04:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:04:15] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 05:04:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 05:04:15] Further information can be found at the LHC@home message board.
[2025-06-04 05:04:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:04:15] Checking for apptainer binary...
[2025-06-04 05:04:15] apptainer is not installed, using version from CVMFS
[2025-06-04 05:04:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:04:15] epyc7v12
[2025-06-04 05:04:15] apptainer works
[2025-06-04 05:04:15] Set ATHENA_PROC_NUMBER=12
[2025-06-04 05:04:15] Set ATHENA_CORE_NUMBER=12
[2025-06-04 05:04:15] Starting ATLAS job with PandaID=6678153428
[2025-06-04 05:04:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 06:52:58]  *** The last 200 lines of the pilot log: ***
[2025-06-04 06:52:58] 2025-06-04 06:52:43,020 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 06:52:58] 2025-06-04 06:52:43,020 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/18/PanDA_Pilot-6678153428/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,021 | INFO     | extracted standard info from prmon json
[2025-06-04 06:52:58] 2025-06-04 06:52:43,021 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 06:52:58] 2025-06-04 06:52:43,021 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 06:52:58] 2025-06-04 06:52:43,022 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 06:52:58] 2025-06-04 06:52:43,022 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 06:52:58] 2025-06-04 06:52:43,024 | INFO     | fitting pss+swap vs Time
[2025-06-04 06:52:58] 2025-06-04 06:52:43,024 | INFO     | sum of square deviations: 369273110.4150944
[2025-06-04 06:52:58] 2025-06-04 06:52:43,024 | INFO     | sum of deviations: 15762302390.22641
[2025-06-04 06:52:58] 2025-06-04 06:52:43,025 | INFO     | mean x: 1749016726.528302
[2025-06-04 06:52:58] 2025-06-04 06:52:43,025 | INFO     | mean y: 2551199.9245283017
[2025-06-04 06:52:58] 2025-06-04 06:52:43,025 | INFO     | -- intersect: -74653657853.8938
[2025-06-04 06:52:58] 2025-06-04 06:52:43,025 | INFO     | intersect: -74653657853.8938
[2025-06-04 06:52:58] 2025-06-04 06:52:43,025 | INFO     | chi2: 2.565360170309012
[2025-06-04 06:52:58] 2025-06-04 06:52:43,026 | INFO     | sum of square deviations: 319440532.9108916
[2025-06-04 06:52:58] 2025-06-04 06:52:43,026 | INFO     | sum of deviations: 22223843610.277225
[2025-06-04 06:52:58] 2025-06-04 06:52:43,026 | INFO     | mean x: 1749016574.029703
[2025-06-04 06:52:58] 2025-06-04 06:52:43,026 | INFO     | mean y: 2570084.574257426
[2025-06-04 06:52:58] 2025-06-04 06:52:43,027 | INFO     | -- intersect: -121678515464.64684
[2025-06-04 06:52:58] 2025-06-04 06:52:43,027 | INFO     | intersect: -121678515464.64684
[2025-06-04 06:52:58] 2025-06-04 06:52:43,027 | INFO     | chi2: 1.7487872239792817
[2025-06-04 06:52:58] 2025-06-04 06:52:43,027 | INFO     | current chi2=1.7487872239792817 (change=31.830733001182033 %)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,027 | INFO     | sum of square deviations: 274305717.90625
[2025-06-04 06:52:58] 2025-06-04 06:52:43,028 | INFO     | sum of deviations: 20940918105.875
[2025-06-04 06:52:58] 2025-06-04 06:52:43,028 | INFO     | mean x: 1749016421.53125
[2025-06-04 06:52:58] 2025-06-04 06:52:43,028 | INFO     | mean y: 2565746.375
[2025-06-04 06:52:58] 2025-06-04 06:52:43,028 | INFO     | -- intersect: -133520023314.76224
[2025-06-04 06:52:58] 2025-06-04 06:52:43,028 | INFO     | intersect: -133520023314.76224
[2025-06-04 06:52:58] 2025-06-04 06:52:43,029 | INFO     | chi2: 1.7503950096574834
[2025-06-04 06:52:58] 2025-06-04 06:52:43,029 | INFO     | current chi2=1.7503950096574834 (change=-0.09193718115936975 %)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,029 | INFO     | right removable region: 95
[2025-06-04 06:52:58] 2025-06-04 06:52:43,029 | INFO     | sum of square deviations: 319438702.9108916
[2025-06-04 06:52:58] 2025-06-04 06:52:43,030 | INFO     | sum of deviations: -4419136959.712872
[2025-06-04 06:52:58] 2025-06-04 06:52:43,030 | INFO     | mean x: 1749016879.029703
[2025-06-04 06:52:58] 2025-06-04 06:52:43,030 | INFO     | mean y: 2611997.2376237623
[2025-06-04 06:52:58] 2025-06-04 06:52:43,030 | INFO     | -- intersect: 24198631649.36439
[2025-06-04 06:52:58] 2025-06-04 06:52:43,030 | INFO     | intersect: 24198631649.36439
[2025-06-04 06:52:58] 2025-06-04 06:52:43,030 | INFO     | chi2: 0.8602972360956617
[2025-06-04 06:52:58] 2025-06-04 06:52:43,030 | INFO     | current chi2=0.8602972360956617 (change=66.46485565447779 %)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,031 | INFO     | sum of square deviations: 274302057.90625
[2025-06-04 06:52:58] 2025-06-04 06:52:43,031 | INFO     | sum of deviations: -4871918197.25
[2025-06-04 06:52:58] 2025-06-04 06:52:43,031 | INFO     | mean x: 1749017031.53125
[2025-06-04 06:52:58] 2025-06-04 06:52:43,031 | INFO     | mean y: 2613506.75
[2025-06-04 06:52:58] 2025-06-04 06:52:43,031 | INFO     | -- intersect: 31067155888.453804
[2025-06-04 06:52:58] 2025-06-04 06:52:43,032 | INFO     | intersect: 31067155888.453804
[2025-06-04 06:52:58] 2025-06-04 06:52:43,032 | INFO     | chi2: 0.8605890638048929
[2025-06-04 06:52:58] 2025-06-04 06:52:43,032 | INFO     | current chi2=0.8605890638048929 (change=-0.03392173041908343 %)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,032 | INFO     | left removable region: 20
[2025-06-04 06:52:58] 2025-06-04 06:52:43,032 | INFO     | sum of square deviations: 130783270.88000003
[2025-06-04 06:52:58] 2025-06-04 06:52:43,033 | INFO     | sum of deviations: 889599889.6
[2025-06-04 06:52:58] 2025-06-04 06:52:43,033 | INFO     | mean x: 1749017001.04
[2025-06-04 06:52:58] 2025-06-04 06:52:43,033 | INFO     | mean y: 2640810.8
[2025-06-04 06:52:58] 2025-06-04 06:52:43,033 | INFO     | -- intersect: -11894334395.312897
[2025-06-04 06:52:58] 2025-06-04 06:52:43,033 | INFO     | intersect: -11894334395.312897
[2025-06-04 06:52:58] 2025-06-04 06:52:43,033 | INFO     | chi2: 0.0002541754696806297
[2025-06-04 06:52:58] 2025-06-04 06:52:43,033 | INFO     | -- intersect: -11894334395.312897
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | current memory leak: 6.80 B/s (using 75 data points, chi2=0.00)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | ..............................
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | . Timing measurements:
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | . get job = 0 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | . initial setup = 2 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | . payload setup = 10 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | . stage-in = 0 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | . payload execution = 6417 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,034 | INFO     | . stage-out = 1 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,035 | INFO     | . log creation = 0 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,035 | INFO     | ..............................
[2025-06-04 06:52:58] 2025-06-04 06:52:43,130 | INFO     | 
[2025-06-04 06:52:58] 2025-06-04 06:52:43,130 | INFO     | job summary report
[2025-06-04 06:52:58] 2025-06-04 06:52:43,130 | INFO     | --------------------------------------------------
[2025-06-04 06:52:58] 2025-06-04 06:52:43,130 | INFO     | PanDA job id: 6678153428
[2025-06-04 06:52:58] 2025-06-04 06:52:43,130 | INFO     | task id: 45006595
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | errors: (none)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | pilot state: finished 
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | transexitcode: 0
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | exeerrorcode: 0
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | exeerrordiag: 
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | exitcode: 0
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | exitmsg: OK
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | cpuconsumptiontime: 40283 s
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | nevents: 400
[2025-06-04 06:52:58] 2025-06-04 06:52:43,131 | INFO     | neventsw: 0
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | pid: 3297021
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | pgrp: 3297021
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | corecount: 12
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | event service: False
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | sizes: {0: 2405037, 1: 2405236, 11: 2405442, 12: 2405470, 6432: 2432575, 6433: 2432574, 6435: 2441803, 6458: 2441917}
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | --------------------------------------------------
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | 
[2025-06-04 06:52:58] 2025-06-04 06:52:43,132 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/18
[2025-06-04 06:52:58] 2025-06-04 06:52:43,158 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,158 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,158 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,158 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,159 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,160 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 06:52:58] 2025-06-04 06:52:43,160 | INFO     | job 6678153428 has completed (purged errors)
[2025-06-04 06:52:58] 2025-06-04 06:52:43,160 | INFO     | overall cleanup function is called
[2025-06-04 06:52:58] 2025-06-04 06:52:44,169 | INFO     | --- collectZombieJob: --- 10, [3297021]
[2025-06-04 06:52:58] 2025-06-04 06:52:44,169 | INFO     | zombie collector waiting for pid 3297021
[2025-06-04 06:52:58] 2025-06-04 06:52:44,169 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 06:52:58] 2025-06-04 06:52:44,169 | INFO     | collected zombie processes
[2025-06-04 06:52:58] 2025-06-04 06:52:44,170 | INFO     | will attempt to kill all subprocesses of pid=3297021
[2025-06-04 06:52:58] 2025-06-04 06:52:44,758 | INFO     | process IDs to be killed: [3297021] (in reverse order)
[2025-06-04 06:52:58] 2025-06-04 06:52:45,012 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 06:52:58] 2025-06-04 06:52:45,012 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 06:52:58] 2025-06-04 06:52:45,029 | INFO     | did not find any defunct processes belonging to 3297021
[2025-06-04 06:52:58] 2025-06-04 06:52:45,045 | INFO     | did not find any defunct processes belonging to 3297021
[2025-06-04 06:52:58] 2025-06-04 06:52:45,046 | INFO     | ready for new job
[2025-06-04 06:52:58] 2025-06-04 06:52:45,046 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 06:52:58] 2025-06-04 06:52:45,048 | INFO     | **************************************
[2025-06-04 06:52:58] 2025-06-04 06:52:45,048 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 06:52:58] 2025-06-04 06:52:45,048 | INFO     | **************************************
[2025-06-04 06:52:58] 2025-06-04 06:52:45,048 | INFO     | 
[2025-06-04 06:52:58] 2025-06-04 06:52:45,059 | INFO     | architecture information:
[2025-06-04 06:52:58] 2025-06-04 06:52:45,059 | INFO     | executing command: cat /etc/os-release
[2025-06-04 06:52:58] 2025-06-04 06:52:45,081 | INFO     | cat /etc/os-release:
[2025-06-04 06:52:58] NAME="CentOS Linux"
[2025-06-04 06:52:58] VERSION="7 (Core)"
[2025-06-04 06:52:58] ID="centos"
[2025-06-04 06:52:58] ID_LIKE="rhel fedora"
[2025-06-04 06:52:58] VERSION_ID="7"
[2025-06-04 06:52:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 06:52:58] ANSI_COLOR="0;31"
[2025-06-04 06:52:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 06:52:58] HOME_URL="https://www.centos.org/"
[2025-06-04 06:52:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 06:52:58] 
[2025-06-04 06:52:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 06:52:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 06:52:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 06:52:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 06:52:58] 
[2025-06-04 06:52:58] 2025-06-04 06:52:45,082 | INFO     | **************************************
[2025-06-04 06:52:58] 2025-06-04 06:52:45,586 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/18
[2025-06-04 06:52:58] 2025-06-04 06:52:45,617 | INFO     | sufficient remaining disk space (312673828864 B)
[2025-06-04 06:52:58] 2025-06-04 06:52:45,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 06:52:58] 2025-06-04 06:52:45,617 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 06:52:58] 2025-06-04 06:52:45,617 | INFO     | update_server=False
[2025-06-04 06:52:58] 2025-06-04 06:52:45,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 06:52:58] 2025-06-04 06:52:45,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 06:52:58] 2025-06-04 06:52:45,698 | INFO     | all data control threads have been joined
[2025-06-04 06:52:58] 2025-06-04 06:52:46,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:52:58] 2025-06-04 06:52:46,074 | INFO     | aborting loop
[2025-06-04 06:52:58] 2025-06-04 06:52:46,314 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 06:52:58] 2025-06-04 06:52:46,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 06:52:58] 2025-06-04 06:52:46,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 06:52:58] 2025-06-04 06:52:46,345 | INFO     | all job control threads have been joined
[2025-06-04 06:52:58] 2025-06-04 06:52:46,501 | INFO     | all payload control threads have been joined
[2025-06-04 06:52:58] 2025-06-04 06:52:46,622 | INFO     | [job] retrieve thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:46,626 | INFO     | [data] copytool_in thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:46,630 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:46,678 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:46,686 | INFO     | [job] validate thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:46,702 | INFO     | [data] control thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:47,078 | INFO     | [job] job monitor thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:47,165 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:47,293 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:47,349 | INFO     | [job] control thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:47,507 | INFO     | [payload] control thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:47,525 | INFO     | [payload] validate_post thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:47,621 | INFO     | [data] copytool_out thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:48,121 | INFO     | [payload] failed_post thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:48,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 06:52:58] 2025-06-04 06:52:48,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 06:52:58] 2025-06-04 06:52:49,145 | INFO     | [job] queue monitor thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:52,758 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 06:52:58] 2025-06-04 06:52:53,549 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038657529664)>', '<ExcThread(monitor, started 140037928769280)>']
[2025-06-04 06:52:58] 2025-06-04 06:52:54,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 06:52:58] 2025-06-04 06:52:54,346 | INFO     | [monitor] control thread has ended
[2025-06-04 06:52:58] 2025-06-04 06:52:58,573 | INFO     | all workflow threads have been joined
[2025-06-04 06:52:58] 2025-06-04 06:52:58,574 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 06:52:58] 2025-06-04 06:52:58,574 | INFO     | traces error code: 0
[2025-06-04 06:52:58] 2025-06-04 06:52:58,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 06:52:58] 2025-06-04 06:52:58,713 [wrapper] ==== pilot stdout END ====
[2025-06-04 06:52:58] 2025-06-04 06:52:58,716 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 06:52:58] 2025-06-04 06:52:58,720 [wrapper] pilotpid: 3231033
[2025-06-04 06:52:58] 2025-06-04 06:52:58,723 [wrapper] Pilot exit status: 0
[2025-06-04 06:52:58] 2025-06-04 06:52:58,737 [wrapper] pandaids: 6678153428
[2025-06-04 06:52:58] 2025-06-04 06:52:58,855 [wrapper] cleanup supervisor_pilot 3753968 3231034
[2025-06-04 06:52:58] 2025-06-04 06:52:58,860 [wrapper] Test setup, not cleaning
[2025-06-04 06:52:58] 2025-06-04 06:52:58,864 [wrapper] apfmon messages muted
[2025-06-04 06:52:58] 2025-06-04 06:52:58,867 [wrapper] ==== wrapper stdout END ====
[2025-06-04 06:52:58] 2025-06-04 06:52:58,871 [wrapper] ==== wrapper stderr END ====
[2025-06-04 06:52:58]  *** Error codes and diagnostics ***
[2025-06-04 06:52:58]     "exeErrorCode": 0,
[2025-06-04 06:52:58]     "exeErrorDiag": "",
[2025-06-04 06:52:58]     "pilotErrorCode": 0,
[2025-06-04 06:52:58]     "pilotErrorDiag": "",
[2025-06-04 06:52:58]  *** Listing of results directory ***
[2025-06-04 06:52:58] total 397160
[2025-06-04 06:52:58] -rw-r--r-- 1 boinc boinc    495897 Jun  3 22:42 pilot3.tar.gz
[2025-06-04 06:52:58] -rw-r--r-- 1 boinc boinc      5111 Jun  3 22:45 queuedata.json
[2025-06-04 06:52:58] -rwx------ 1 boinc boinc     37140 Jun  3 22:45 runpilot2-wrapper.sh
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc       100 Jun  4 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 06:52:58] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 05:04 run_atlas
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc       105 Jun  4 05:04 job.xml
[2025-06-04 06:52:58] -rw-r--r-- 2 boinc boinc 218793361 Jun  4 05:04 EVNT.45006593._001903.pool.root.1
[2025-06-04 06:52:58] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:04 start_atlas.sh
[2025-06-04 06:52:58] drwxrwx--x 2 boinc boinc      4096 Jun  4 05:04 shared
[2025-06-04 06:52:58] -rw-r--r-- 2 boinc boinc    508879 Jun  4 05:04 input.tar.gz
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc      6951 Jun  4 05:04 init_data.xml
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc         0 Jun  4 05:04 boinc_lockfile
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc      2525 Jun  4 05:04 pandaJob.out
[2025-06-04 06:52:58] -rw------- 1 boinc boinc    986745 Jun  4 05:04 agis_schedconf.cvmfs.json
[2025-06-04 06:52:58] -rw------- 1 boinc boinc   1603667 Jun  4 05:04 agis_ddmendpoints.agis.ALL.json
[2025-06-04 06:52:58] drwx------ 4 boinc boinc      4096 Jun  4 05:04 pilot3
[2025-06-04 06:52:58] -rw------- 1 boinc boinc 182111584 Jun  4 06:51 HITS.45006595._047446.pool.root.1
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc       530 Jun  4 06:51 boinc_task_state.xml
[2025-06-04 06:52:58] -rw------- 1 boinc boinc      1023 Jun  4 06:52 memory_monitor_summary.json
[2025-06-04 06:52:58] -rw------- 1 boinc boinc    380726 Jun  4 06:52 log.45006595._047446.job.log.tgz.1
[2025-06-04 06:52:58] -rw------- 1 boinc boinc        95 Jun  4 06:52 pilot_heartbeat.json
[2025-06-04 06:52:58] -rw------- 1 boinc boinc      7649 Jun  4 06:52 heartbeat.json
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc        27 Jun  4 06:52 wrapper_checkpoint.txt
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 06:52 boinc_mmap_file
[2025-06-04 06:52:58] -rw------- 1 boinc boinc      4378 Jun  4 06:52 pilotlog.txt
[2025-06-04 06:52:58] -rw------- 1 boinc boinc    595830 Jun  4 06:52 log.45006595._047446.job.log.1
[2025-06-04 06:52:58] -rw------- 1 boinc boinc       357 Jun  4 06:52 output.list
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc       620 Jun  4 06:52 runtime_log
[2025-06-04 06:52:58] -rw------- 1 boinc boinc    993280 Jun  4 06:52 result.tar.gz
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc      8977 Jun  4 06:52 runtime_log.err
[2025-06-04 06:52:58] -rw------- 1 boinc boinc       651 Jun  4 06:52 pRDMDm8Ypg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlBaKDmSiIdtm.diag
[2025-06-04 06:52:58] -rw-rw-r-- 1 boinc boinc     21030 Jun  4 06:52 stderr.txt
[2025-06-04 06:52:58] HITS file was successfully produced:
[2025-06-04 06:52:58] -rw------- 1 boinc boinc 182111584 Jun  4 06:51 shared/HITS.pool.root.1
[2025-06-04 06:52:58]  *** Contents of shared directory: ***
[2025-06-04 06:52:58] total 393008
[2025-06-04 06:52:58] -rw-r--r-- 2 boinc boinc 218793361 Jun  4 05:04 ATLAS.root_0
[2025-06-04 06:52:58] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:04 start_atlas.sh
[2025-06-04 06:52:58] -rw-r--r-- 2 boinc boinc    508879 Jun  4 05:04 input.tar.gz
[2025-06-04 06:52:58] -rw------- 1 boinc boinc 182111584 Jun  4 06:51 HITS.pool.root.1
[2025-06-04 06:52:58] -rw------- 1 boinc boinc    993280 Jun  4 06:52 result.tar.gz
06:53:00 (3208052): run_atlas exited; CPU time 40600.448761
06:53:00 (3208052): called boinc_finish(0)

</stderr_txt>
]]>

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