Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:58:39 (24065): wrapper (7.7.26015): starting
13:58:39 (24065): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:58:39] Arguments: --nthreads 8
[2025-06-04 13:58:39] Threads: 8
[2025-06-04 13:58:39] Checking for CVMFS
[2025-06-04 13:58:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:58:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:58:40] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:58:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:58:41] 2.11.2.0 555 33290 99244 146779 2 16 14827462 25165825 3910 130560 0 17733935 99.816 20566406 2723 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:58:41] CVMFS is ok
[2025-06-04 13:58:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:58:41] Checking for apptainer binary...
[2025-06-04 13:58:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:58:41] Running /usr/bin/apptainer --version
[2025-06-04 13:58:41] apptainer version 1.3.2-1.el7
[2025-06-04 13:58:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:58:49] cg-vwn340.simple-grid.lan
[2025-06-04 13:58:49] apptainer works
[2025-06-04 13:58:49] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:58:49] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:58:50] Starting ATLAS job with PandaID=6678153319
[2025-06-04 13:58:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:04:07]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:04:07] 2025-06-04 15:54:07,527 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:04:07] 2025-06-04 15:54:07,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:04:07] 2025-06-04 15:54:07,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:04:07] 2025-06-04 15:54:07,527 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:04:07] 2025-06-04 15:54:07,532 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:04:07] 2025-06-04 15:54:07,533 | INFO     | sum of square deviations: 3256879670.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,535 | INFO     | sum of deviations: 77206372274.00002
[2025-06-04 18:04:07] 2025-06-04 15:54:07,535 | INFO     | mean x: 1749045676.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,535 | INFO     | mean y: 2422332.799086758
[2025-06-04 18:04:07] 2025-06-04 15:54:07,535 | INFO     | -- intersect: -41459800797.3192
[2025-06-04 18:04:07] 2025-06-04 15:54:07,535 | INFO     | intersect: -41459800797.3192
[2025-06-04 18:04:07] 2025-06-04 15:54:07,536 | INFO     | chi2: 6.859540076511063
[2025-06-04 18:04:07] 2025-06-04 15:54:07,536 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 18:04:07] 2025-06-04 15:54:07,544 | INFO     | sum of deviations: 89883547000.49997
[2025-06-04 18:04:07] 2025-06-04 15:54:07,545 | INFO     | mean x: 1749045523.5
[2025-06-04 18:04:07] 2025-06-04 15:54:07,545 | INFO     | mean y: 2431013.6588785048
[2025-06-04 18:04:07] 2025-06-04 15:54:07,545 | INFO     | -- intersect: -51730972921.28374
[2025-06-04 18:04:07] 2025-06-04 15:54:07,545 | INFO     | intersect: -51730972921.28374
[2025-06-04 18:04:07] 2025-06-04 15:54:07,546 | INFO     | chi2: 6.146393217705736
[2025-06-04 18:04:07] 2025-06-04 15:54:07,546 | INFO     | current chi2=6.146393217705736 (change=10.396423825080296 %)
[2025-06-04 18:04:07] 2025-06-04 15:54:07,546 | INFO     | right removable region: 213
[2025-06-04 18:04:07] 2025-06-04 15:54:07,546 | INFO     | sum of square deviations: 3038856977.5
[2025-06-04 18:04:07] 2025-06-04 15:54:07,548 | INFO     | sum of deviations: 2054738060.5
[2025-06-04 18:04:07] 2025-06-04 15:54:07,548 | INFO     | mean x: 1749045828.5
[2025-06-04 18:04:07] 2025-06-04 15:54:07,548 | INFO     | mean y: 2474853.051401869
[2025-06-04 18:04:07] 2025-06-04 15:54:07,548 | INFO     | -- intersect: -1180151068.4667177
[2025-06-04 18:04:07] 2025-06-04 15:54:07,548 | INFO     | intersect: -1180151068.4667177
[2025-06-04 18:04:07] 2025-06-04 15:54:07,549 | INFO     | chi2: 2.0461708150948077
[2025-06-04 18:04:07] 2025-06-04 15:54:07,549 | INFO     | current chi2=2.0461708150948077 (change=70.17043719736466 %)
[2025-06-04 18:04:07] 2025-06-04 15:54:07,549 | INFO     | sum of square deviations: 2830787960.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,551 | INFO     | sum of deviations: -34368400827.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,551 | INFO     | mean x: 1749045981.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,551 | INFO     | mean y: 2501432.086124402
[2025-06-04 18:04:07] 2025-06-04 15:54:07,551 | INFO     | -- intersect: 21237547712.225536
[2025-06-04 18:04:07] 2025-06-04 15:54:07,551 | INFO     | intersect: 21237547712.225536
[2025-06-04 18:04:07] 2025-06-04 15:54:07,552 | INFO     | chi2: 0.8408715286065095
[2025-06-04 18:04:07] 2025-06-04 15:54:07,552 | INFO     | current chi2=0.8408715286065095 (change=58.90511572136031 %)
[2025-06-04 18:04:07] 2025-06-04 15:54:07,552 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,554 | INFO     | sum of deviations: -36346120592.5
[2025-06-04 18:04:07] 2025-06-04 15:54:07,554 | INFO     | mean x: 1749046133.5
[2025-06-04 18:04:07] 2025-06-04 15:54:07,554 | INFO     | mean y: 2502922.8970588236
[2025-06-04 18:04:07] 2025-06-04 15:54:07,554 | INFO     | -- intersect: 24151596676.91869
[2025-06-04 18:04:07] 2025-06-04 15:54:07,554 | INFO     | intersect: 24151596676.91869
[2025-06-04 18:04:07] 2025-06-04 15:54:07,555 | INFO     | chi2: 0.819219030277527
[2025-06-04 18:04:07] 2025-06-04 15:54:07,555 | INFO     | current chi2=0.819219030277527 (change=2.5750067153379543 %)
[2025-06-04 18:04:07] 2025-06-04 15:54:07,555 | INFO     | left removable region: 30
[2025-06-04 18:04:07] 2025-06-04 15:54:07,555 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,557 | INFO     | sum of deviations: -18427602850.000008
[2025-06-04 18:04:07] 2025-06-04 15:54:07,557 | INFO     | mean x: 1749046408.0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,557 | INFO     | mean y: 2511237.7650273223
[2025-06-04 18:04:07] 2025-06-04 15:54:07,557 | INFO     | -- intersect: 16963511154.193914
[2025-06-04 18:04:07] 2025-06-04 15:54:07,557 | INFO     | intersect: 16963511154.193914
[2025-06-04 18:04:07] 2025-06-04 15:54:07,558 | INFO     | chi2: 0.02677520418322146
[2025-06-04 18:04:07] 2025-06-04 15:54:07,558 | INFO     | -- intersect: 16963511154.193914
[2025-06-04 18:04:07] 2025-06-04 15:54:07,558 | INFO     | current memory leak: -9.70 B/s (using 183 data points, chi2=0.03)
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | ..............................
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . Timing measurements:
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . get job = 0 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . initial setup = 3 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . payload setup = 178 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . stage-in = 0 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . payload execution = 13475 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . stage-out = 3 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | . log creation = 1 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,559 | INFO     | ..............................
[2025-06-04 18:04:07] 2025-06-04 15:54:07,710 | INFO     | 
[2025-06-04 18:04:07] 2025-06-04 15:54:07,710 | INFO     | job summary report
[2025-06-04 18:04:07] 2025-06-04 15:54:07,710 | INFO     | --------------------------------------------------
[2025-06-04 18:04:07] 2025-06-04 15:54:07,710 | INFO     | PanDA job id: 6678153319
[2025-06-04 18:04:07] 2025-06-04 15:54:07,710 | INFO     | task id: 45006595
[2025-06-04 18:04:07] 2025-06-04 15:54:07,710 | INFO     | errors: (none)
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | pilot state: finished 
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | transexitcode: 0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | exeerrorcode: 0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | exeerrordiag: 
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | exitcode: 0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | exitmsg: OK
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | cpuconsumptiontime: 50355 s
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | nevents: 400
[2025-06-04 18:04:07] 2025-06-04 15:54:07,711 | INFO     | neventsw: 0
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | pid: 2775
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | pgrp: 2775
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | corecount: 8
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | event service: False
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | sizes: {0: 2396463, 1: 2397149, 2: 2397348, 13: 2397348, 23: 2397404, 34: 2397432, 45: 2397588, 55: 2397616, 66: 2397644, 77: 2397672, 88: 2397728, 91: 2398242, 98
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | --------------------------------------------------
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | 
[2025-06-04 18:04:07] 2025-06-04 15:54:07,712 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 18:04:07] 2025-06-04 15:54:08,093 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,093 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,093 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,093 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,093 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,094 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,095 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:04:07] 2025-06-04 15:54:08,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,095 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:04:07] 2025-06-04 15:54:08,095 | INFO     | job 6678153319 has completed (purged errors)
[2025-06-04 18:04:07] 2025-06-04 15:54:08,095 | INFO     | overall cleanup function is called
[2025-06-04 18:04:07] 2025-06-04 15:54:09,104 | INFO     | --- collectZombieJob: --- 10, [2775]
[2025-06-04 18:04:07] 2025-06-04 15:54:09,104 | INFO     | zombie collector waiting for pid 2775
[2025-06-04 18:04:07] 2025-06-04 15:54:09,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:04:07] 2025-06-04 15:54:09,104 | INFO     | collected zombie processes
[2025-06-04 18:04:07] 2025-06-04 15:54:09,105 | INFO     | will attempt to kill all subprocesses of pid=2775
[2025-06-04 18:04:07] 2025-06-04 15:54:09,236 | INFO     | process IDs to be killed: [2775] (in reverse order)
[2025-06-04 18:04:07] 2025-06-04 15:54:10,174 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:04:07] 2025-06-04 15:54:10,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:04:07] 2025-06-04 15:54:10,178 | INFO     | did not find any defunct processes belonging to 2775
[2025-06-04 18:04:07] 2025-06-04 15:54:10,182 | INFO     | did not find any defunct processes belonging to 2775
[2025-06-04 18:04:07] 2025-06-04 15:54:10,182 | INFO     | ready for new job
[2025-06-04 18:04:07] 2025-06-04 15:54:10,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:04:07] 2025-06-04 15:54:10,184 | INFO     | **************************************
[2025-06-04 18:04:07] 2025-06-04 15:54:10,185 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:04:07] 2025-06-04 15:54:10,185 | INFO     | **************************************
[2025-06-04 18:04:07] 2025-06-04 15:54:10,185 | INFO     | 
[2025-06-04 18:04:07] 2025-06-04 15:54:10,186 | INFO     | pilot is running in a VM
[2025-06-04 18:04:07] 2025-06-04 15:54:10,186 | INFO     | architecture information:
[2025-06-04 18:04:07] 2025-06-04 15:54:10,186 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:04:07] 2025-06-04 15:54:10,262 | INFO     | cat /etc/os-release:
[2025-06-04 18:04:07] NAME="CentOS Linux"
[2025-06-04 18:04:07] VERSION="7 (Core)"
[2025-06-04 18:04:07] ID="centos"
[2025-06-04 18:04:07] ID_LIKE="rhel fedora"
[2025-06-04 18:04:07] VERSION_ID="7"
[2025-06-04 18:04:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:04:07] ANSI_COLOR="0;31"
[2025-06-04 18:04:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:04:07] HOME_URL="https://www.centos.org/"
[2025-06-04 18:04:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:04:07] 
[2025-06-04 18:04:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:04:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:04:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:04:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:04:07] 
[2025-06-04 18:04:07] 2025-06-04 15:54:10,263 | INFO     | **************************************
[2025-06-04 18:04:07] 2025-06-04 15:54:10,766 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 18:04:07] 2025-06-04 15:54:10,857 | INFO     | sufficient remaining disk space (496519610368 B)
[2025-06-04 18:04:07] 2025-06-04 15:54:10,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:04:07] 2025-06-04 15:54:10,858 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:04:07] 2025-06-04 15:54:10,858 | INFO     | update_server=False
[2025-06-04 18:04:07] 2025-06-04 15:54:10,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:04:07] 2025-06-04 15:54:10,859 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:04:07] 2025-06-04 15:54:10,859 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:04:07] 2025-06-04 15:54:10,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:04:07] 2025-06-04 15:54:10,860 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:04:07] 2025-06-04 15:54:10,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:04:07] 2025-06-04 15:54:10,945 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:04:07] 2025-06-04 15:54:10,945 | INFO     | aborting loop
[2025-06-04 18:04:07] 2025-06-04 15:54:11,231 | INFO     | all job control threads have been joined
[2025-06-04 18:04:07] 2025-06-04 15:54:11,552 | INFO     | all payload control threads have been joined
[2025-06-04 18:04:07] 2025-06-04 15:54:11,646 | INFO     | all data control threads have been joined
[2025-06-04 18:04:07] 2025-06-04 15:54:11,864 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:11,951 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:11,973 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,237 | INFO     | [job] control thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,558 | INFO     | [payload] control thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,598 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,652 | INFO     | [data] control thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,724 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:04:07] 2025-06-04 15:54:12,741 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,756 | INFO     | [job] validate thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,868 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:12,984 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:13,155 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:13,450 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:13,730 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:13,775 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:04:07] 2025-06-04 15:54:17,783 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:21,697 | INFO     | job.realtimelogging is not enabled
[2025-06-04 18:04:07] 2025-06-04 15:54:22,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:04:07] 2025-06-04 15:54:24,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895595095872)>', '<ExcThread(monitor, started 139895297255168)>']
[2025-06-04 18:04:07] 2025-06-04 15:54:24,945 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:04:07] 2025-06-04 15:54:24,945 | INFO     | [monitor] control thread has ended
[2025-06-04 18:04:07] 2025-06-04 15:54:29,532 | INFO     | all workflow threads have been joined
[2025-06-04 18:04:07] 2025-06-04 15:54:29,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:04:07] 2025-06-04 15:54:29,532 | INFO     | traces error code: 0
[2025-06-04 18:04:07] 2025-06-04 15:54:29,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:04:07] 2025-06-04 15:54:29,767 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:04:07] 2025-06-04 15:54:29,824 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:04:07] 2025-06-04 15:54:29,892 [wrapper] pilotpid: 28526
[2025-06-04 18:04:07] 2025-06-04 15:54:29,998 [wrapper] Pilot exit status: 0
[2025-06-04 18:04:07] 2025-06-04 15:54:30,436 [wrapper] pandaids: 6678153319
[2025-06-04 18:04:07] 2025-06-04 15:54:31,235 [wrapper] cleanup supervisor_pilot 12502 28527
[2025-06-04 18:04:07] 2025-06-04 15:54:31,240 [wrapper] Test setup, not cleaning
[2025-06-04 18:04:07] 2025-06-04 15:54:31,245 [wrapper] apfmon messages muted
[2025-06-04 18:04:07] 2025-06-04 15:54:31,248 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:04:07] 2025-06-04 15:54:31,251 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:04:07]  *** Error codes and diagnostics ***
[2025-06-04 18:04:07]     "exeErrorCode": 0,
[2025-06-04 18:04:07]     "exeErrorDiag": "",
[2025-06-04 18:04:07]     "pilotErrorCode": 0,
[2025-06-04 18:04:07]     "pilotErrorDiag": "",
[2025-06-04 18:04:07]  *** Listing of results directory ***
[2025-06-04 18:04:07] total 390560
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:57 pilot3.tar.gz
[2025-06-04 18:04:07] -rwx------. 1 boinc boinc     37140 Jun  4 00:38 runpilot2-wrapper.sh
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc      5111 Jun  4 00:38 queuedata.json
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:04:07] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:58 run_atlas
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:58 job.xml
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc      6391 Jun  4 13:58 init_data.xml
[2025-06-04 18:04:07] -rw-r--r--. 2 boinc boinc 214940610 Jun  4 13:58 EVNT.45006593._001899.pool.root.1
[2025-06-04 18:04:07] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:58 start_atlas.sh
[2025-06-04 18:04:07] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:58 shared
[2025-06-04 18:04:07] -rw-r--r--. 2 boinc boinc    508876 Jun  4 13:58 input.tar.gz
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:58 boinc_lockfile
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc      2524 Jun  4 13:58 pandaJob.out
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc    986812 Jun  4 14:01 agis_schedconf.cvmfs.json
[2025-06-04 18:04:07] drwx------. 4 boinc boinc      4096 Jun  4 14:01 pilot3
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc 178061589 Jun  4 17:51 HITS.45006595._047337.pool.root.1
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc       531 Jun  4 17:51 boinc_task_state.xml
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc      1014 Jun  4 17:52 memory_monitor_summary.json
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc   1598969 Jun  4 17:52 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc    370735 Jun  4 17:52 log.45006595._047337.job.log.tgz.1
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc        95 Jun  4 17:54 pilot_heartbeat.json
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc      7691 Jun  4 17:54 heartbeat.json
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc      4612 Jun  4 17:54 pilotlog.txt
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc   1183451 Jun  4 17:54 log.45006595._047337.job.log.1
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc       357 Jun  4 17:54 output.list
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:54 runtime_log
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc   1576960 Jun  4 17:54 result.tar.gz
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc      8673 Jun  4 17:54 runtime_log.err
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc       657 Jun  4 17:54 JifMDm8Rpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9OmKDmrmDAun.diag
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:04 boinc_mmap_file
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:04 wrapper_checkpoint.txt
[2025-06-04 18:04:07] -rw-r--r--. 1 boinc boinc     20494 Jun  4 18:04 stderr.txt
[2025-06-04 18:04:07] HITS file was successfully produced:
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc 178061589 Jun  4 17:51 shared/HITS.pool.root.1
[2025-06-04 18:04:07]  *** Contents of shared directory: ***
[2025-06-04 18:04:07] total 385852
[2025-06-04 18:04:07] -rw-r--r--. 2 boinc boinc 214940610 Jun  4 13:58 ATLAS.root_0
[2025-06-04 18:04:07] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:58 start_atlas.sh
[2025-06-04 18:04:07] -rw-r--r--. 2 boinc boinc    508876 Jun  4 13:58 input.tar.gz
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc 178061589 Jun  4 17:51 HITS.pool.root.1
[2025-06-04 18:04:07] -rw-------. 1 boinc boinc   1576960 Jun  4 17:54 result.tar.gz
18:04:09 (24065): run_atlas exited; CPU time 50546.534712
18:04:09 (24065): called boinc_finish(0)

</stderr_txt>
]]>

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