Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:30:47 (25168): wrapper (7.7.26015): starting
13:30:47 (25168): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:30:47] Arguments: --nthreads 8
[2025-06-04 13:30:47] Threads: 8
[2025-06-04 13:30:47] Checking for CVMFS
[2025-06-04 13:30:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:30:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:30:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:30:49] 2.11.2.0 18967 33246 95312 146778 3 16 23564938 25165825 3909 130560 0 16987277 99.816 18785014 2483 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:30:49] CVMFS is ok
[2025-06-04 13:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:30:49] Checking for apptainer binary...
[2025-06-04 13:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:30:49] Running /usr/bin/apptainer --version
[2025-06-04 13:30:49] apptainer version 1.3.2-1.el7
[2025-06-04 13:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:01:24] cg-vwn474.simple-grid.lan
[2025-06-04 14:01:24] apptainer works
[2025-06-04 14:01:24] Set ATHENA_PROC_NUMBER=8
[2025-06-04 14:01:24] Set ATHENA_CORE_NUMBER=8
[2025-06-04 14:01:24] Starting ATLAS job with PandaID=6678152323
[2025-06-04 14:01:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:36:54]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:36:54] 2025-06-04 15:30:06,806 | INFO     | extracted standard info from prmon json
[2025-06-04 17:36:54] 2025-06-04 15:30:06,806 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:36:54] 2025-06-04 15:30:06,806 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:36:54] 2025-06-04 15:30:06,806 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:36:54] 2025-06-04 15:30:06,807 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:36:54] 2025-06-04 15:30:06,810 | INFO     | fitting pss+swap vs Time
[2025-06-04 17:36:54] 2025-06-04 15:30:06,811 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,812 | INFO     | sum of deviations: 32635159088.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,812 | INFO     | mean x: 1749045043.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,812 | INFO     | mean y: 2478358.5025906735
[2025-06-04 17:36:54] 2025-06-04 15:30:06,813 | INFO     | -- intersect: -25603892815.64764
[2025-06-04 17:36:54] 2025-06-04 15:30:06,813 | INFO     | intersect: -25603892815.64764
[2025-06-04 17:36:54] 2025-06-04 15:30:06,813 | INFO     | chi2: 7.659373148362207
[2025-06-04 17:36:54] 2025-06-04 15:30:06,813 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | sum of deviations: 45171386756.99999
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | mean x: 1749044890.5
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | mean y: 2489444.340425532
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | -- intersect: -38343919167.89694
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | intersect: -38343919167.89694
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | chi2: 6.974578203983399
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | current chi2=6.974578203983399 (change=8.940613430294055 %)
[2025-06-04 17:36:54] 2025-06-04 15:30:06,815 | INFO     | right removable region: 187
[2025-06-04 17:36:54] 2025-06-04 15:30:06,816 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,817 | INFO     | sum of deviations: -35996725036.5
[2025-06-04 17:36:54] 2025-06-04 15:30:06,817 | INFO     | mean x: 1749045195.5
[2025-06-04 17:36:54] 2025-06-04 15:30:06,817 | INFO     | mean y: 2540312.3776595746
[2025-06-04 17:36:54] 2025-06-04 15:30:06,818 | INFO     | -- intersect: 30560498939.669228
[2025-06-04 17:36:54] 2025-06-04 15:30:06,818 | INFO     | intersect: 30560498939.669228
[2025-06-04 17:36:54] 2025-06-04 15:30:06,818 | INFO     | chi2: 2.5137234097496215
[2025-06-04 17:36:54] 2025-06-04 15:30:06,818 | INFO     | current chi2=2.5137234097496215 (change=67.1810817796868 %)
[2025-06-04 17:36:54] 2025-06-04 15:30:06,818 | INFO     | sum of square deviations: 1900284932.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,819 | INFO     | sum of deviations: -70039163366.00002
[2025-06-04 17:36:54] 2025-06-04 15:30:06,820 | INFO     | mean x: 1749045348.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,820 | INFO     | mean y: 2572512.819672131
[2025-06-04 17:36:54] 2025-06-04 15:30:06,820 | INFO     | -- intersect: 64467469750.19584
[2025-06-04 17:36:54] 2025-06-04 15:30:06,824 | INFO     | intersect: 64467469750.19584
[2025-06-04 17:36:54] 2025-06-04 15:30:06,825 | INFO     | chi2: 0.9796776723709436
[2025-06-04 17:36:54] 2025-06-04 15:30:06,825 | INFO     | current chi2=0.9796776723709436 (change=61.02683101206732 %)
[2025-06-04 17:36:54] 2025-06-04 15:30:06,825 | INFO     | sum of square deviations: 1748737904.5
[2025-06-04 17:36:54] 2025-06-04 15:30:06,826 | INFO     | sum of deviations: -68570659766.49999
[2025-06-04 17:36:54] 2025-06-04 15:30:06,826 | INFO     | mean x: 1749045500.5
[2025-06-04 17:36:54] 2025-06-04 15:30:06,827 | INFO     | mean y: 2570988.533707865
[2025-06-04 17:36:54] 2025-06-04 15:30:06,827 | INFO     | -- intersect: 68585292059.70792
[2025-06-04 17:36:54] 2025-06-04 15:30:06,827 | INFO     | intersect: 68585292059.70792
[2025-06-04 17:36:54] 2025-06-04 15:30:06,827 | INFO     | chi2: 0.9579008782441347
[2025-06-04 17:36:54] 2025-06-04 15:30:06,827 | INFO     | current chi2=0.9579008782441347 (change=2.222852958780442 %)
[2025-06-04 17:36:54] 2025-06-04 15:30:06,827 | INFO     | left removable region: 30
[2025-06-04 17:36:54] 2025-06-04 15:30:06,828 | INFO     | sum of square deviations: 1199940638.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,828 | INFO     | sum of deviations: -41235951749.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,829 | INFO     | mean x: 1749045775.0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,829 | INFO     | mean y: 2570724.7643312104
[2025-06-04 17:36:54] 2025-06-04 15:30:06,829 | INFO     | -- intersect: 60108516719.64638
[2025-06-04 17:36:54] 2025-06-04 15:30:06,829 | INFO     | intersect: 60108516719.64638
[2025-06-04 17:36:54] 2025-06-04 15:30:06,829 | INFO     | chi2: 0.1599586161393053
[2025-06-04 17:36:54] 2025-06-04 15:30:06,829 | INFO     | -- intersect: 60108516719.64638
[2025-06-04 17:36:54] 2025-06-04 15:30:06,829 | INFO     | current memory leak: -34.36 B/s (using 157 data points, chi2=0.16)
[2025-06-04 17:36:54] 2025-06-04 15:30:06,830 | INFO     | ..............................
[2025-06-04 17:36:54] 2025-06-04 15:30:06,830 | INFO     | . Timing measurements:
[2025-06-04 17:36:54] 2025-06-04 15:30:06,830 | INFO     | . get job = 0 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,831 | INFO     | . initial setup = 6 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,831 | INFO     | . payload setup = 151 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,831 | INFO     | . stage-in = 0 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,831 | INFO     | . payload execution = 11874 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,831 | INFO     | . stage-out = 3 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,831 | INFO     | . log creation = 1 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,831 | INFO     | ..............................
[2025-06-04 17:36:54] 2025-06-04 15:30:06,953 | INFO     | 
[2025-06-04 17:36:54] 2025-06-04 15:30:06,953 | INFO     | job summary report
[2025-06-04 17:36:54] 2025-06-04 15:30:06,953 | INFO     | --------------------------------------------------
[2025-06-04 17:36:54] 2025-06-04 15:30:06,953 | INFO     | PanDA job id: 6678152323
[2025-06-04 17:36:54] 2025-06-04 15:30:06,953 | INFO     | task id: 45006595
[2025-06-04 17:36:54] 2025-06-04 15:30:06,953 | INFO     | errors: (none)
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | pilot state: finished 
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | transexitcode: 0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | exeerrorcode: 0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | exeerrordiag: 
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | exitcode: 0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | exitmsg: OK
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | cpuconsumptiontime: 43854 s
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | nevents: 400
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | neventsw: 0
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | pid: 22106
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | pgrp: 22106
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | corecount: 8
[2025-06-04 17:36:54] 2025-06-04 15:30:06,954 | INFO     | event service: False
[2025-06-04 17:36:54] 2025-06-04 15:30:06,955 | INFO     | sizes: {0: 2397115, 1: 2397370, 2: 2397370, 12: 2397398, 23: 2397426, 34: 2397454, 44: 2397610, 55: 2397638, 66: 2397666, 77: 2397694, 87: 2397750, 93: 2398264, 98
[2025-06-04 17:36:54] 2025-06-04 15:30:06,955 | INFO     | --------------------------------------------------
[2025-06-04 17:36:54] 2025-06-04 15:30:06,955 | INFO     | 
[2025-06-04 17:36:54] 2025-06-04 15:30:06,955 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:36:54] 2025-06-04 15:30:07,323 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,324 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:36:54] 2025-06-04 15:30:07,324 | INFO     | job 6678152323 has completed (purged errors)
[2025-06-04 17:36:54] 2025-06-04 15:30:07,324 | INFO     | overall cleanup function is called
[2025-06-04 17:36:54] 2025-06-04 15:30:08,332 | INFO     | --- collectZombieJob: --- 10, [22106]
[2025-06-04 17:36:54] 2025-06-04 15:30:08,332 | INFO     | zombie collector waiting for pid 22106
[2025-06-04 17:36:54] 2025-06-04 15:30:08,333 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:36:54] 2025-06-04 15:30:08,333 | INFO     | collected zombie processes
[2025-06-04 17:36:54] 2025-06-04 15:30:08,333 | INFO     | will attempt to kill all subprocesses of pid=22106
[2025-06-04 17:36:54] 2025-06-04 15:30:08,437 | INFO     | process IDs to be killed: [22106] (in reverse order)
[2025-06-04 17:36:54] 2025-06-04 15:30:09,410 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:36:54] 2025-06-04 15:30:09,410 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:36:54] 2025-06-04 15:30:09,413 | INFO     | did not find any defunct processes belonging to 22106
[2025-06-04 17:36:54] 2025-06-04 15:30:09,416 | INFO     | did not find any defunct processes belonging to 22106
[2025-06-04 17:36:54] 2025-06-04 15:30:09,417 | INFO     | ready for new job
[2025-06-04 17:36:54] 2025-06-04 15:30:09,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:36:54] 2025-06-04 15:30:09,419 | INFO     | **************************************
[2025-06-04 17:36:54] 2025-06-04 15:30:09,419 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:36:54] 2025-06-04 15:30:09,419 | INFO     | **************************************
[2025-06-04 17:36:54] 2025-06-04 15:30:09,419 | INFO     | 
[2025-06-04 17:36:54] 2025-06-04 15:30:09,420 | INFO     | pilot is running in a VM
[2025-06-04 17:36:54] 2025-06-04 15:30:09,420 | INFO     | architecture information:
[2025-06-04 17:36:54] 2025-06-04 15:30:09,422 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:36:54] 2025-06-04 15:30:09,635 | INFO     | cat /etc/os-release:
[2025-06-04 17:36:54] NAME="CentOS Linux"
[2025-06-04 17:36:54] VERSION="7 (Core)"
[2025-06-04 17:36:54] ID="centos"
[2025-06-04 17:36:54] ID_LIKE="rhel fedora"
[2025-06-04 17:36:54] VERSION_ID="7"
[2025-06-04 17:36:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:36:54] ANSI_COLOR="0;31"
[2025-06-04 17:36:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:36:54] HOME_URL="https://www.centos.org/"
[2025-06-04 17:36:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:36:54] 
[2025-06-04 17:36:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:36:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:36:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:36:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:36:54] 
[2025-06-04 17:36:54] 2025-06-04 15:30:09,635 | INFO     | **************************************
[2025-06-04 17:36:54] 2025-06-04 15:30:10,138 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 17:36:54] 2025-06-04 15:30:10,408 | INFO     | sufficient remaining disk space (496598253568 B)
[2025-06-04 17:36:54] 2025-06-04 15:30:10,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:36:54] 2025-06-04 15:30:10,409 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:36:54] 2025-06-04 15:30:10,409 | INFO     | update_server=False
[2025-06-04 17:36:54] 2025-06-04 15:30:10,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:36:54] 2025-06-04 15:30:10,409 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 17:36:54] 2025-06-04 15:30:10,409 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:36:54] 2025-06-04 15:30:10,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:36:54] 2025-06-04 15:30:10,409 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:36:54] 2025-06-04 15:30:10,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:36:54] 2025-06-04 15:30:10,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:36:54] 2025-06-04 15:30:10,713 | INFO     | all data control threads have been joined
[2025-06-04 17:36:54] 2025-06-04 15:30:11,058 | INFO     | all payload control threads have been joined
[2025-06-04 17:36:54] 2025-06-04 15:30:11,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:36:54] 2025-06-04 15:30:11,170 | INFO     | aborting loop
[2025-06-04 17:36:54] 2025-06-04 15:30:11,414 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:11,557 | INFO     | all job control threads have been joined
[2025-06-04 17:36:54] 2025-06-04 15:30:11,563 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:11,570 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:11,589 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:11,719 | INFO     | [data] control thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:11,968 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:36:54] 2025-06-04 15:30:12,064 | INFO     | [payload] control thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,176 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,198 | INFO     | [job] validate thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,199 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,213 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,449 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,560 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,563 | INFO     | [job] control thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,713 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:12,974 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:14,423 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:36:54] 2025-06-04 15:30:16,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140256466839360)>', '<ExcThread(monitor, started 140256007399168)>']
[2025-06-04 17:36:54] 2025-06-04 15:30:16,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:36:54] 2025-06-04 15:30:16,443 | INFO     | [monitor] control thread has ended
[2025-06-04 17:36:54] 2025-06-04 15:30:21,051 | INFO     | all workflow threads have been joined
[2025-06-04 17:36:54] 2025-06-04 15:30:21,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:36:54] 2025-06-04 15:30:21,052 | INFO     | traces error code: 0
[2025-06-04 17:36:54] 2025-06-04 15:30:21,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:36:54] 2025-06-04 15:30:21,569 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:36:54] 2025-06-04 15:30:21,635 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:36:54] 2025-06-04 15:30:21,694 [wrapper] pilotpid: 15458
[2025-06-04 17:36:54] 2025-06-04 15:30:21,772 [wrapper] Pilot exit status: 0
[2025-06-04 17:36:54] 2025-06-04 15:30:22,197 [wrapper] pandaids: 6678152323
[2025-06-04 17:36:54] 2025-06-04 15:30:22,998 [wrapper] cleanup supervisor_pilot 14850 15459
[2025-06-04 17:36:54] 2025-06-04 15:30:23,114 [wrapper] Test setup, not cleaning
[2025-06-04 17:36:54] 2025-06-04 15:30:23,168 [wrapper] apfmon messages muted
[2025-06-04 17:36:54] 2025-06-04 15:30:23,269 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:36:54] 2025-06-04 15:30:23,354 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:36:54]  *** Error codes and diagnostics ***
[2025-06-04 17:36:54]     "exeErrorCode": 0,
[2025-06-04 17:36:54]     "exeErrorDiag": "",
[2025-06-04 17:36:54]     "pilotErrorCode": 0,
[2025-06-04 17:36:54]     "pilotErrorDiag": "",
[2025-06-04 17:36:54]  *** Listing of results directory ***
[2025-06-04 17:36:54] total 387252
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:57 pilot3.tar.gz
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc      5111 Jun  4 00:33 queuedata.json
[2025-06-04 17:36:54] -rwx------. 1 boinc boinc     37140 Jun  4 00:33 runpilot2-wrapper.sh
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:36:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:30 run_atlas
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:30 job.xml
[2025-06-04 17:36:54] -rw-r--r--. 2 boinc boinc 214586455 Jun  4 13:30 EVNT.45006593._001888.pool.root.1
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc      6392 Jun  4 13:30 init_data.xml
[2025-06-04 17:36:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:30 start_atlas.sh
[2025-06-04 17:36:54] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:30 shared
[2025-06-04 17:36:54] -rw-r--r--. 2 boinc boinc    508878 Jun  4 13:30 input.tar.gz
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:30 boinc_lockfile
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc      2525 Jun  4 14:01 pandaJob.out
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc    986812 Jun  4 14:04 agis_schedconf.cvmfs.json
[2025-06-04 17:36:54] drwx------. 4 boinc boinc      4096 Jun  4 14:04 pilot3
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc 175290118 Jun  4 17:27 HITS.45006595._047100.pool.root.1
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc       531 Jun  4 17:27 boinc_task_state.xml
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc      1015 Jun  4 17:28 memory_monitor_summary.json
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc   1598969 Jun  4 17:28 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc    373061 Jun  4 17:28 log.45006595._047100.job.log.tgz.1
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc        95 Jun  4 17:29 pilot_heartbeat.json
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc      7694 Jun  4 17:30 heartbeat.json
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc      4539 Jun  4 17:30 pilotlog.txt
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc   1048774 Jun  4 17:30 log.45006595._047100.job.log.1
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc       357 Jun  4 17:30 output.list
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:30 runtime_log
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc   1443840 Jun  4 17:30 result.tar.gz
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc      8659 Jun  4 17:30 runtime_log.err
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc       657 Jun  4 17:30 oXLLDmMNpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkMmKDmU0s71n.diag
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc      8192 Jun  4 17:36 boinc_mmap_file
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc        28 Jun  4 17:36 wrapper_checkpoint.txt
[2025-06-04 17:36:54] -rw-r--r--. 1 boinc boinc     20501 Jun  4 17:36 stderr.txt
[2025-06-04 17:36:54] HITS file was successfully produced:
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc 175290118 Jun  4 17:27 shared/HITS.pool.root.1
[2025-06-04 17:36:54]  *** Contents of shared directory: ***
[2025-06-04 17:36:54] total 382672
[2025-06-04 17:36:54] -rw-r--r--. 2 boinc boinc 214586455 Jun  4 13:30 ATLAS.root_0
[2025-06-04 17:36:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:30 start_atlas.sh
[2025-06-04 17:36:54] -rw-r--r--. 2 boinc boinc    508878 Jun  4 13:30 input.tar.gz
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc 175290118 Jun  4 17:27 HITS.pool.root.1
[2025-06-04 17:36:54] -rw-------. 1 boinc boinc   1443840 Jun  4 17:30 result.tar.gz
17:36:56 (25168): run_atlas exited; CPU time 44014.084286
17:36:56 (25168): called boinc_finish(0)

</stderr_txt>
]]>

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