Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
05:10:17 (3457111): wrapper (7.7.26015): starting
05:10:17 (3457111): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 05:10:17] Arguments: --nthreads 12
[2025-06-04 05:10:17] Threads: 12
[2025-06-04 05:10:17] Checking for CVMFS
[2025-06-04 05:10:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 05:10:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 05:10:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 05:10:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 05:10:20] 2.12.7.0 29207 1471 74004 146768 2 187 3662773 4096001 16281 130560 17 19555960 99.999 390231 151 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 05:10:20] CVMFS is ok
[2025-06-04 05:10:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 05:10:20] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 05:10:20] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 05:10:20] Further information can be found at the LHC@home message board.
[2025-06-04 05:10:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 05:10:20] Checking for apptainer binary...
[2025-06-04 05:10:20] apptainer is not installed, using version from CVMFS
[2025-06-04 05:10:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 05:10:20] epyc7v12
[2025-06-04 05:10:20] apptainer works
[2025-06-04 05:10:20] Set ATHENA_PROC_NUMBER=12
[2025-06-04 05:10:20] Set ATHENA_CORE_NUMBER=12
[2025-06-04 05:10:20] Starting ATLAS job with PandaID=6678152421
[2025-06-04 05:10:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:12:55]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:12:55] 2025-06-04 07:12:36,359 | INFO     | mean x: 1749017692.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,360 | INFO     | mean y: 2364628.5803571427
[2025-06-04 07:12:55] 2025-06-04 07:12:36,360 | INFO     | -- intersect: -327920495223.92236
[2025-06-04 07:12:55] 2025-06-04 07:12:36,360 | INFO     | intersect: -327920495223.92236
[2025-06-04 07:12:55] 2025-06-04 07:12:36,360 | INFO     | chi2: 11.0740229128068
[2025-06-04 07:12:55] 2025-06-04 07:12:36,360 | INFO     | sum of square deviations: 379832238.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,361 | INFO     | sum of deviations: 85413028929.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,361 | INFO     | mean x: 1749017540.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,365 | INFO     | mean y: 2374043.6542056073
[2025-06-04 07:12:55] 2025-06-04 07:12:36,365 | INFO     | -- intersect: -393299907321.2793
[2025-06-04 07:12:55] 2025-06-04 07:12:36,366 | INFO     | intersect: -393299907321.2793
[2025-06-04 07:12:55] 2025-06-04 07:12:36,366 | INFO     | chi2: 10.277254566018874
[2025-06-04 07:12:55] 2025-06-04 07:12:36,366 | INFO     | current chi2=10.277254566018874 (change=7.194931354769783 %)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,366 | INFO     | right removable region: 106
[2025-06-04 07:12:55] 2025-06-04 07:12:36,366 | INFO     | sum of square deviations: 379832238.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,367 | INFO     | sum of deviations: 42994344032.00001
[2025-06-04 07:12:55] 2025-06-04 07:12:36,367 | INFO     | mean x: 1749017845.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,367 | INFO     | mean y: 2470328.785046729
[2025-06-04 07:12:55] 2025-06-04 07:12:36,367 | INFO     | -- intersect: -197974076743.65506
[2025-06-04 07:12:55] 2025-06-04 07:12:36,367 | INFO     | intersect: -197974076743.65506
[2025-06-04 07:12:55] 2025-06-04 07:12:36,368 | INFO     | chi2: 5.293591569175416
[2025-06-04 07:12:55] 2025-06-04 07:12:36,368 | INFO     | current chi2=5.293591569175416 (change=52.19811616017586 %)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,368 | INFO     | sum of square deviations: 329031285.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,368 | INFO     | sum of deviations: 11408889871.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,369 | INFO     | mean x: 1749017997.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,369 | INFO     | mean y: 2565011.0490196077
[2025-06-04 07:12:55] 2025-06-04 07:12:36,369 | INFO     | -- intersect: -60643199073.1355
[2025-06-04 07:12:55] 2025-06-04 07:12:36,369 | INFO     | intersect: -60643199073.1355
[2025-06-04 07:12:55] 2025-06-04 07:12:36,369 | INFO     | chi2: 1.9210379201298742
[2025-06-04 07:12:55] 2025-06-04 07:12:36,373 | INFO     | current chi2=1.9210379201298742 (change=63.71012204046723 %)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,374 | INFO     | sum of square deviations: 282974608.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,374 | INFO     | sum of deviations: -3864749732.9999976
[2025-06-04 07:12:55] 2025-06-04 07:12:36,374 | INFO     | mean x: 1749018150.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,374 | INFO     | mean y: 2615059.3402061854
[2025-06-04 07:12:55] 2025-06-04 07:12:36,374 | INFO     | -- intersect: 23889978932.7258
[2025-06-04 07:12:55] 2025-06-04 07:12:36,375 | INFO     | intersect: 23889978932.7258
[2025-06-04 07:12:55] 2025-06-04 07:12:36,375 | INFO     | chi2: 1.0625659682931345
[2025-06-04 07:12:55] 2025-06-04 07:12:36,375 | INFO     | current chi2=1.0625659682931345 (change=44.687923275283474 %)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,375 | INFO     | sum of square deviations: 241429643.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | sum of deviations: -9256779768.0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | mean x: 1749018302.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | mean y: 2634788.717391304
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | -- intersect: 67062657059.651634
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | intersect: 67062657059.651634
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | chi2: 0.9430022078369038
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | current chi2=0.9430022078369038 (change=11.25236117323552 %)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,376 | INFO     | left removable region: 40
[2025-06-04 07:12:55] 2025-06-04 07:12:36,377 | INFO     | sum of square deviations: 89127252.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,377 | INFO     | sum of deviations: -749908532.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,377 | INFO     | mean x: 1749018729.5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,381 | INFO     | mean y: 2650313.772727273
[2025-06-04 07:12:55] 2025-06-04 07:12:36,382 | INFO     | -- intersect: 14718733576.345638
[2025-06-04 07:12:55] 2025-06-04 07:12:36,382 | INFO     | intersect: 14718733576.345638
[2025-06-04 07:12:55] 2025-06-04 07:12:36,382 | INFO     | chi2: 0.006366719563556875
[2025-06-04 07:12:55] 2025-06-04 07:12:36,382 | INFO     | -- intersect: 14718733576.345638
[2025-06-04 07:12:55] 2025-06-04 07:12:36,382 | INFO     | current memory leak: -8.41 B/s (using 66 data points, chi2=0.01)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | ..............................
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . Timing measurements:
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . get job = 0 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . initial setup = 5 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . payload setup = 150 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . stage-in = 0 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . payload execution = 6858 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . stage-out = 2 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,383 | INFO     | . log creation = 0 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,384 | INFO     | ..............................
[2025-06-04 07:12:55] 2025-06-04 07:12:36,644 | INFO     | 
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | job summary report
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | --------------------------------------------------
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | PanDA job id: 6678152421
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | task id: 45006595
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | errors: (none)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | pilot state: finished 
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | transexitcode: 0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,645 | INFO     | exeerrorcode: 0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | exeerrordiag: 
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | exitcode: 0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | exitmsg: OK
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | cpuconsumptiontime: 38642 s
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | nevents: 400
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | neventsw: 0
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | pid: 3485225
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | pgrp: 3485225
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | corecount: 12
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | event service: False
[2025-06-04 07:12:55] 2025-06-04 07:12:36,646 | INFO     | sizes: {0: 2404355, 1: 2405063, 2: 2405262, 13: 2405262, 24: 2405318, 35: 2405346, 46: 2405502, 57: 2405530, 67: 2405558, 70: 2405792, 78: 2405820, 7012: 2433228, 
[2025-06-04 07:12:55] 2025-06-04 07:12:36,647 | INFO     | --------------------------------------------------
[2025-06-04 07:12:55] 2025-06-04 07:12:36,647 | INFO     | 
[2025-06-04 07:12:55] 2025-06-04 07:12:36,647 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/5
[2025-06-04 07:12:55] 2025-06-04 07:12:36,762 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,762 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,763 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,764 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:12:55] 2025-06-04 07:12:36,765 | INFO     | job 6678152421 has completed (purged errors)
[2025-06-04 07:12:55] 2025-06-04 07:12:36,765 | INFO     | overall cleanup function is called
[2025-06-04 07:12:55] 2025-06-04 07:12:37,801 | INFO     | --- collectZombieJob: --- 10, [3485225]
[2025-06-04 07:12:55] 2025-06-04 07:12:37,802 | INFO     | zombie collector waiting for pid 3485225
[2025-06-04 07:12:55] 2025-06-04 07:12:37,802 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:12:55] 2025-06-04 07:12:37,802 | INFO     | collected zombie processes
[2025-06-04 07:12:55] 2025-06-04 07:12:37,802 | INFO     | will attempt to kill all subprocesses of pid=3485225
[2025-06-04 07:12:55] 2025-06-04 07:12:39,257 | INFO     | PID=3465358 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 07:12:55] 2025-06-04 07:12:39,258 | INFO     | .. there are 19 such processes running
[2025-06-04 07:12:55] 2025-06-04 07:12:39,643 | INFO     | process IDs to be killed: [3485225] (in reverse order)
[2025-06-04 07:12:55] 2025-06-04 07:12:42,073 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:12:55] 2025-06-04 07:12:42,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:12:55] 2025-06-04 07:12:42,112 | INFO     | did not find any defunct processes belonging to 3485225
[2025-06-04 07:12:55] 2025-06-04 07:12:42,146 | INFO     | did not find any defunct processes belonging to 3485225
[2025-06-04 07:12:55] 2025-06-04 07:12:42,147 | INFO     | ready for new job
[2025-06-04 07:12:55] 2025-06-04 07:12:42,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:12:55] 2025-06-04 07:12:42,149 | INFO     | **************************************
[2025-06-04 07:12:55] 2025-06-04 07:12:42,149 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:12:55] 2025-06-04 07:12:42,149 | INFO     | **************************************
[2025-06-04 07:12:55] 2025-06-04 07:12:42,149 | INFO     | 
[2025-06-04 07:12:55] 2025-06-04 07:12:42,176 | INFO     | architecture information:
[2025-06-04 07:12:55] 2025-06-04 07:12:42,177 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:12:55] 2025-06-04 07:12:42,258 | INFO     | cat /etc/os-release:
[2025-06-04 07:12:55] NAME="CentOS Linux"
[2025-06-04 07:12:55] VERSION="7 (Core)"
[2025-06-04 07:12:55] ID="centos"
[2025-06-04 07:12:55] ID_LIKE="rhel fedora"
[2025-06-04 07:12:55] VERSION_ID="7"
[2025-06-04 07:12:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:12:55] ANSI_COLOR="0;31"
[2025-06-04 07:12:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:12:55] HOME_URL="https://www.centos.org/"
[2025-06-04 07:12:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:12:55] 
[2025-06-04 07:12:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:12:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:12:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:12:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:12:55] 
[2025-06-04 07:12:55] 2025-06-04 07:12:42,258 | INFO     | **************************************
[2025-06-04 07:12:55] 2025-06-04 07:12:42,762 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/5
[2025-06-04 07:12:55] 2025-06-04 07:12:42,858 | INFO     | sufficient remaining disk space (313867108352 B)
[2025-06-04 07:12:55] 2025-06-04 07:12:42,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:12:55] 2025-06-04 07:12:42,858 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:12:55] 2025-06-04 07:12:42,859 | INFO     | update_server=False
[2025-06-04 07:12:55] 2025-06-04 07:12:42,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:12:55] 2025-06-04 07:12:42,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:12:55] 2025-06-04 07:12:42,859 | INFO     | aborting loop
[2025-06-04 07:12:55] 2025-06-04 07:12:42,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:12:55] 2025-06-04 07:12:42,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:12:55] 2025-06-04 07:12:43,054 | INFO     | all job control threads have been joined
[2025-06-04 07:12:55] 2025-06-04 07:12:43,282 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:12:55] 2025-06-04 07:12:43,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:12:55] 2025-06-04 07:12:43,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:12:55] 2025-06-04 07:12:43,825 | INFO     | all data control threads have been joined
[2025-06-04 07:12:55] 2025-06-04 07:12:43,862 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:43,866 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:43,969 | INFO     | all payload control threads have been joined
[2025-06-04 07:12:55] 2025-06-04 07:12:44,062 | INFO     | [job] control thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,134 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,202 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,478 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,541 | INFO     | [job] validate thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,593 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,829 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,833 | INFO     | [data] control thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,882 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:44,974 | INFO     | [payload] control thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:45,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:45,285 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:45,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:12:55] 2025-06-04 07:12:46,693 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:46,881 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:12:55] 2025-06-04 07:12:48,201 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664789829440)>', '<ExcThread(monitor, started 139664562796288)>']
[2025-06-04 07:12:55] 2025-06-04 07:12:48,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:12:55] 2025-06-04 07:12:48,310 | INFO     | [monitor] control thread has ended
[2025-06-04 07:12:55] 2025-06-04 07:12:53,225 | INFO     | all workflow threads have been joined
[2025-06-04 07:12:55] 2025-06-04 07:12:53,226 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:12:55] 2025-06-04 07:12:53,226 | INFO     | traces error code: 0
[2025-06-04 07:12:55] 2025-06-04 07:12:53,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:12:55] 2025-06-04 07:12:53,549 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:12:55] 2025-06-04 07:12:53,585 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:12:55] 2025-06-04 07:12:53,607 [wrapper] pilotpid: 3465358
[2025-06-04 07:12:55] 2025-06-04 07:12:53,646 [wrapper] Pilot exit status: 0
[2025-06-04 07:12:55] 2025-06-04 07:12:53,833 [wrapper] pandaids: 6678152421
[2025-06-04 07:12:55] 2025-06-04 07:12:54,237 [wrapper] cleanup supervisor_pilot 4035474 3465359
[2025-06-04 07:12:55] 2025-06-04 07:12:54,266 [wrapper] Test setup, not cleaning
[2025-06-04 07:12:55] 2025-06-04 07:12:54,294 [wrapper] apfmon messages muted
[2025-06-04 07:12:55] 2025-06-04 07:12:54,326 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:12:55] 2025-06-04 07:12:54,366 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:12:55]  *** Error codes and diagnostics ***
[2025-06-04 07:12:55]     "exeErrorCode": 0,
[2025-06-04 07:12:55]     "exeErrorDiag": "",
[2025-06-04 07:12:55]     "pilotErrorCode": 0,
[2025-06-04 07:12:55]     "pilotErrorDiag": "",
[2025-06-04 07:12:55]  *** Listing of results directory ***
[2025-06-04 07:12:55] total 386388
[2025-06-04 07:12:55] -rw-r--r-- 1 boinc boinc    495897 Jun  3 21:57 pilot3.tar.gz
[2025-06-04 07:12:55] -rwx------ 1 boinc boinc     37140 Jun  3 22:33 runpilot2-wrapper.sh
[2025-06-04 07:12:55] -rw-r--r-- 1 boinc boinc      5111 Jun  3 22:33 queuedata.json
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc       100 Jun  4 05:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:12:55] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 05:10 run_atlas
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc       105 Jun  4 05:10 job.xml
[2025-06-04 07:12:55] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:10 start_atlas.sh
[2025-06-04 07:12:55] drwxrwx--x 2 boinc boinc      4096 Jun  4 05:10 shared
[2025-06-04 07:12:55] -rw-r--r-- 2 boinc boinc    508882 Jun  4 05:10 input.tar.gz
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc      6950 Jun  4 05:10 init_data.xml
[2025-06-04 07:12:55] -rw-r--r-- 2 boinc boinc 213692681 Jun  4 05:10 EVNT.45006593._001892.pool.root.1
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc         0 Jun  4 05:10 boinc_lockfile
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc      2524 Jun  4 05:10 pandaJob.out
[2025-06-04 07:12:55] -rw------- 1 boinc boinc    986745 Jun  4 05:12 agis_schedconf.cvmfs.json
[2025-06-04 07:12:55] -rw------- 1 boinc boinc   1603667 Jun  4 05:12 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:12:55] drwx------ 4 boinc boinc      4096 Jun  4 05:12 pilot3
[2025-06-04 07:12:55] -rw------- 1 boinc boinc 176052637 Jun  4 07:10 HITS.45006595._047198.pool.root.1
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc       530 Jun  4 07:10 boinc_task_state.xml
[2025-06-04 07:12:55] -rw------- 1 boinc boinc      1023 Jun  4 07:11 memory_monitor_summary.json
[2025-06-04 07:12:55] -rw------- 1 boinc boinc    387209 Jun  4 07:11 log.45006595._047198.job.log.tgz.1
[2025-06-04 07:12:55] -rw------- 1 boinc boinc        95 Jun  4 07:12 pilot_heartbeat.json
[2025-06-04 07:12:55] -rw------- 1 boinc boinc      7655 Jun  4 07:12 heartbeat.json
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 07:12 boinc_mmap_file
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc        27 Jun  4 07:12 wrapper_checkpoint.txt
[2025-06-04 07:12:55] -rw------- 1 boinc boinc      4377 Jun  4 07:12 pilotlog.txt
[2025-06-04 07:12:55] -rw------- 1 boinc boinc    652337 Jun  4 07:12 log.45006595._047198.job.log.1
[2025-06-04 07:12:55] -rw------- 1 boinc boinc       357 Jun  4 07:12 output.list
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc       620 Jun  4 07:12 runtime_log
[2025-06-04 07:12:55] -rw------- 1 boinc boinc   1054720 Jun  4 07:12 result.tar.gz
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc      8963 Jun  4 07:12 runtime_log.err
[2025-06-04 07:12:55] -rw------- 1 boinc boinc       651 Jun  4 07:12 9V3KDm6Mpg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKAaKDmtICVVo.diag
[2025-06-04 07:12:55] -rw-rw-r-- 1 boinc boinc     21018 Jun  4 07:12 stderr.txt
[2025-06-04 07:12:55] HITS file was successfully produced:
[2025-06-04 07:12:55] -rw------- 1 boinc boinc 176052637 Jun  4 07:10 shared/HITS.pool.root.1
[2025-06-04 07:12:55]  *** Contents of shared directory: ***
[2025-06-04 07:12:55] total 382172
[2025-06-04 07:12:55] -rw-r--r-- 2 boinc boinc     15093 Jun  4 05:10 start_atlas.sh
[2025-06-04 07:12:55] -rw-r--r-- 2 boinc boinc    508882 Jun  4 05:10 input.tar.gz
[2025-06-04 07:12:55] -rw-r--r-- 2 boinc boinc 213692681 Jun  4 05:10 ATLAS.root_0
[2025-06-04 07:12:55] -rw------- 1 boinc boinc 176052637 Jun  4 07:10 HITS.pool.root.1
[2025-06-04 07:12:55] -rw------- 1 boinc boinc   1054720 Jun  4 07:12 result.tar.gz
07:12:56 (3457111): run_atlas exited; CPU time 39032.613028
07:12:56 (3457111): called boinc_finish(0)

</stderr_txt>
]]>

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