Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:31:04 (4320): wrapper (7.7.26015): starting
16:31:04 (4320): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 16:31:04] Arguments: --nthreads 8
[2025-06-04 16:31:04] Threads: 8
[2025-06-04 16:31:04] Checking for CVMFS
[2025-06-04 16:31:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 16:31:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 16:31:04] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 16:31:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 16:31:04] 2.11.2.0 3973 33473 96756 146781 1 245 15122145 25165825 4019 130560 0 18513994 99.752 21853743 2703 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 16:31:04] CVMFS is ok
[2025-06-04 16:31:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 16:31:04] Checking for apptainer binary...
[2025-06-04 16:31:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 16:31:04] Running /usr/bin/apptainer --version
[2025-06-04 16:31:04] apptainer version 1.3.2-1.el7
[2025-06-04 16:31:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 16:31:06] cg-vwn471.simple-grid.lan
[2025-06-04 16:31:06] apptainer works
[2025-06-04 16:31:06] Set ATHENA_PROC_NUMBER=8
[2025-06-04 16:31:06] Set ATHENA_CORE_NUMBER=8
[2025-06-04 16:31:06] Starting ATLAS job with PandaID=6678152442
[2025-06-04 16:31:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 20:35:20]  *** The last 200 lines of the pilot log: ***
[2025-06-04 20:35:20] 2025-06-04 17:55:01,930 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6678152442/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 20:35:20] 2025-06-04 17:55:01,931 | INFO     | extracted standard info from prmon json
[2025-06-04 20:35:20] 2025-06-04 17:55:01,931 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 20:35:20] 2025-06-04 17:55:01,931 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 20:35:20] 2025-06-04 17:55:01,932 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 20:35:20] 2025-06-04 17:55:01,932 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 20:35:20] 2025-06-04 17:55:01,935 | INFO     | fitting pss+swap vs Time
[2025-06-04 20:35:20] 2025-06-04 17:55:01,936 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 20:35:20] 2025-06-04 17:55:01,937 | INFO     | sum of deviations: 31954257873.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,937 | INFO     | mean x: 1749053569.5
[2025-06-04 20:35:20] 2025-06-04 17:55:01,938 | INFO     | mean y: 2440055.626262626
[2025-06-04 20:35:20] 2025-06-04 17:55:01,938 | INFO     | -- intersect: -23217918948.742336
[2025-06-04 20:35:20] 2025-06-04 17:55:01,938 | INFO     | intersect: -23217918948.742336
[2025-06-04 20:35:20] 2025-06-04 17:55:01,938 | INFO     | chi2: 2.5340077419031597
[2025-06-04 20:35:20] 2025-06-04 17:55:01,938 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,940 | INFO     | sum of deviations: 43808974205.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,940 | INFO     | mean x: 1749053417.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,940 | INFO     | mean y: 2449995.3834196893
[2025-06-04 20:35:20] 2025-06-04 17:55:01,940 | INFO     | -- intersect: -34371343681.48668
[2025-06-04 20:35:20] 2025-06-04 17:55:01,940 | INFO     | intersect: -34371343681.48668
[2025-06-04 20:35:20] 2025-06-04 17:55:01,940 | INFO     | chi2: 1.7619654775432627
[2025-06-04 20:35:20] 2025-06-04 17:55:01,940 | INFO     | current chi2=1.7619654775432627 (change=30.46724173699867 %)
[2025-06-04 20:35:20] 2025-06-04 17:55:01,941 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,942 | INFO     | sum of deviations: 42353530949.5
[2025-06-04 20:35:20] 2025-06-04 17:55:01,942 | INFO     | mean x: 1749053264.5
[2025-06-04 20:35:20] 2025-06-04 17:55:01,942 | INFO     | mean y: 2448680.2287234045
[2025-06-04 20:35:20] 2025-06-04 17:55:01,942 | INFO     | -- intersect: -35952028177.42583
[2025-06-04 20:35:20] 2025-06-04 17:55:01,942 | INFO     | intersect: -35952028177.42583
[2025-06-04 20:35:20] 2025-06-04 17:55:01,943 | INFO     | chi2: 1.7627202574001628
[2025-06-04 20:35:20] 2025-06-04 17:55:01,943 | INFO     | current chi2=1.7627202574001628 (change=-0.042837380557108964 %)
[2025-06-04 20:35:20] 2025-06-04 17:55:01,943 | INFO     | right removable region: 187
[2025-06-04 20:35:20] 2025-06-04 17:55:01,943 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,944 | INFO     | sum of deviations: -4663359292.999999
[2025-06-04 20:35:20] 2025-06-04 17:55:01,944 | INFO     | mean x: 1749053722.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,945 | INFO     | mean y: 2471215.5388601036
[2025-06-04 20:35:20] 2025-06-04 17:55:01,945 | INFO     | -- intersect: 3661479011.0936723
[2025-06-04 20:35:20] 2025-06-04 17:55:01,945 | INFO     | intersect: 3661479011.0936723
[2025-06-04 20:35:20] 2025-06-04 17:55:01,945 | INFO     | chi2: 0.8382632505497216
[2025-06-04 20:35:20] 2025-06-04 17:55:01,945 | INFO     | current chi2=0.8382632505497216 (change=66.91946766034162 %)
[2025-06-04 20:35:20] 2025-06-04 17:55:01,945 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,952 | INFO     | sum of deviations: -10142395153.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,952 | INFO     | mean x: 1749053874.5
[2025-06-04 20:35:20] 2025-06-04 17:55:01,952 | INFO     | mean y: 2476123.85106383
[2025-06-04 20:35:20] 2025-06-04 17:55:01,952 | INFO     | -- intersect: 8612493537.156355
[2025-06-04 20:35:20] 2025-06-04 17:55:01,952 | INFO     | intersect: 8612493537.156355
[2025-06-04 20:35:20] 2025-06-04 17:55:01,953 | INFO     | chi2: 0.7982511305354573
[2025-06-04 20:35:20] 2025-06-04 17:55:01,953 | INFO     | current chi2=0.7982511305354573 (change=4.773216526911439 %)
[2025-06-04 20:35:20] 2025-06-04 17:55:01,953 | INFO     | left removable region: 20
[2025-06-04 20:35:20] 2025-06-04 17:55:01,953 | INFO     | sum of square deviations: 1444149868.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,954 | INFO     | sum of deviations: 3501206813.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,954 | INFO     | mean x: 1749053844.0
[2025-06-04 20:35:20] 2025-06-04 17:55:01,955 | INFO     | mean y: 2485234.5628742515
[2025-06-04 20:35:20] 2025-06-04 17:55:01,955 | INFO     | -- intersect: -4237932862.346607
[2025-06-04 20:35:20] 2025-06-04 17:55:01,955 | INFO     | intersect: -4237932862.346607
[2025-06-04 20:35:20] 2025-06-04 17:55:01,955 | INFO     | chi2: 0.00028634286940359505
[2025-06-04 20:35:20] 2025-06-04 17:55:01,955 | INFO     | -- intersect: -4237932862.346607
[2025-06-04 20:35:20] 2025-06-04 17:55:01,955 | INFO     | current memory leak: 2.42 B/s (using 167 data points, chi2=0.00)
[2025-06-04 20:35:20] 2025-06-04 17:55:01,961 | INFO     | ..............................
[2025-06-04 20:35:20] 2025-06-04 17:55:01,961 | INFO     | . Timing measurements:
[2025-06-04 20:35:20] 2025-06-04 17:55:01,961 | INFO     | . get job = 0 s
[2025-06-04 20:35:20] 2025-06-04 17:55:01,961 | INFO     | . initial setup = 2 s
[2025-06-04 20:35:20] 2025-06-04 17:55:01,962 | INFO     | . payload setup = 15 s
[2025-06-04 20:35:20] 2025-06-04 17:55:01,962 | INFO     | . stage-in = 0 s
[2025-06-04 20:35:20] 2025-06-04 17:55:01,962 | INFO     | . payload execution = 12068 s
[2025-06-04 20:35:20] 2025-06-04 17:55:01,962 | INFO     | . stage-out = 3 s
[2025-06-04 20:35:20] 2025-06-04 17:55:01,962 | INFO     | . log creation = 1 s
[2025-06-04 20:35:20] 2025-06-04 17:55:01,962 | INFO     | ..............................
[2025-06-04 20:35:20] 2025-06-04 17:55:02,476 | INFO     | 
[2025-06-04 20:35:20] 2025-06-04 17:55:02,476 | INFO     | job summary report
[2025-06-04 20:35:20] 2025-06-04 17:55:02,476 | INFO     | --------------------------------------------------
[2025-06-04 20:35:20] 2025-06-04 17:55:02,476 | INFO     | PanDA job id: 6678152442
[2025-06-04 20:35:20] 2025-06-04 17:55:02,476 | INFO     | task id: 45006595
[2025-06-04 20:35:20] 2025-06-04 17:55:02,476 | INFO     | errors: (none)
[2025-06-04 20:35:20] 2025-06-04 17:55:02,476 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | pilot state: finished 
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | transexitcode: 0
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | exeerrorcode: 0
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | exeerrordiag: 
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | exitcode: 0
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | exitmsg: OK
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | cpuconsumptiontime: 45900 s
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | nevents: 400
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | neventsw: 0
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | pid: 16519
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | pgrp: 16519
[2025-06-04 20:35:20] 2025-06-04 17:55:02,477 | INFO     | corecount: 8
[2025-06-04 20:35:20] 2025-06-04 17:55:02,478 | INFO     | event service: False
[2025-06-04 20:35:20] 2025-06-04 17:55:02,478 | INFO     | sizes: {0: 2397116, 1: 2397371, 12: 2397371, 14: 2397605, 22: 2397633, 12087: 2426689, 12092: 2435688, 12183: 2435802}
[2025-06-04 20:35:20] 2025-06-04 17:55:02,478 | INFO     | --------------------------------------------------
[2025-06-04 20:35:20] 2025-06-04 17:55:02,478 | INFO     | 
[2025-06-04 20:35:20] 2025-06-04 17:55:02,478 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-04 20:35:20] 2025-06-04 17:55:02,911 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,911 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,913 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,913 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 20:35:20] 2025-06-04 17:55:02,913 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,913 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 20:35:20] 2025-06-04 17:55:02,913 | INFO     | job 6678152442 has completed (purged errors)
[2025-06-04 20:35:20] 2025-06-04 17:55:02,913 | INFO     | overall cleanup function is called
[2025-06-04 20:35:20] 2025-06-04 17:55:03,922 | INFO     | --- collectZombieJob: --- 10, [16519]
[2025-06-04 20:35:20] 2025-06-04 17:55:03,922 | INFO     | zombie collector waiting for pid 16519
[2025-06-04 20:35:20] 2025-06-04 17:55:03,922 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 20:35:20] 2025-06-04 17:55:03,922 | INFO     | collected zombie processes
[2025-06-04 20:35:20] 2025-06-04 17:55:03,922 | INFO     | will attempt to kill all subprocesses of pid=16519
[2025-06-04 20:35:20] 2025-06-04 17:55:04,046 | INFO     | process IDs to be killed: [16519] (in reverse order)
[2025-06-04 20:35:20] 2025-06-04 17:55:04,868 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 20:35:20] 2025-06-04 17:55:04,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 20:35:20] 2025-06-04 17:55:04,871 | INFO     | did not find any defunct processes belonging to 16519
[2025-06-04 20:35:20] 2025-06-04 17:55:04,875 | INFO     | did not find any defunct processes belonging to 16519
[2025-06-04 20:35:20] 2025-06-04 17:55:04,875 | INFO     | ready for new job
[2025-06-04 20:35:20] 2025-06-04 17:55:04,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 20:35:20] 2025-06-04 17:55:04,877 | INFO     | **************************************
[2025-06-04 20:35:20] 2025-06-04 17:55:04,877 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 20:35:20] 2025-06-04 17:55:04,877 | INFO     | **************************************
[2025-06-04 20:35:20] 2025-06-04 17:55:04,878 | INFO     | 
[2025-06-04 20:35:20] 2025-06-04 17:55:04,878 | INFO     | pilot is running in a VM
[2025-06-04 20:35:20] 2025-06-04 17:55:04,878 | INFO     | architecture information:
[2025-06-04 20:35:20] 2025-06-04 17:55:04,886 | INFO     | executing command: cat /etc/os-release
[2025-06-04 20:35:20] 2025-06-04 17:55:05,050 | INFO     | cat /etc/os-release:
[2025-06-04 20:35:20] NAME="CentOS Linux"
[2025-06-04 20:35:20] VERSION="7 (Core)"
[2025-06-04 20:35:20] ID="centos"
[2025-06-04 20:35:20] ID_LIKE="rhel fedora"
[2025-06-04 20:35:20] VERSION_ID="7"
[2025-06-04 20:35:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 20:35:20] ANSI_COLOR="0;31"
[2025-06-04 20:35:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 20:35:20] HOME_URL="https://www.centos.org/"
[2025-06-04 20:35:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 20:35:20] 
[2025-06-04 20:35:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 20:35:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 20:35:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 20:35:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 20:35:20] 
[2025-06-04 20:35:20] 2025-06-04 17:55:05,051 | INFO     | **************************************
[2025-06-04 20:35:20] 2025-06-04 17:55:05,554 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-04 20:35:20] 2025-06-04 17:55:05,828 | INFO     | sufficient remaining disk space (496638099456 B)
[2025-06-04 20:35:20] 2025-06-04 17:55:05,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 20:35:20] 2025-06-04 17:55:05,829 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 20:35:20] 2025-06-04 17:55:05,829 | INFO     | update_server=False
[2025-06-04 20:35:20] 2025-06-04 17:55:05,829 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 20:35:20] 2025-06-04 17:55:05,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:35:20] 2025-06-04 17:55:05,832 | INFO     | aborting loop
[2025-06-04 20:35:20] 2025-06-04 17:55:05,974 | INFO     | all data control threads have been joined
[2025-06-04 20:35:20] 2025-06-04 17:55:06,316 | INFO     | all payload control threads have been joined
[2025-06-04 20:35:20] 2025-06-04 17:55:06,430 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 20:35:20] 2025-06-04 17:55:06,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 20:35:20] 2025-06-04 17:55:06,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 20:35:20] 2025-06-04 17:55:06,757 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 20:35:20] 2025-06-04 17:55:06,835 | INFO     | [job] retrieve thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:06,838 | INFO     | [job] job monitor thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:06,980 | INFO     | [data] control thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,050 | INFO     | all job control threads have been joined
[2025-06-04 20:35:20] 2025-06-04 17:55:07,072 | INFO     | [payload] failed_post thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 20:35:20] 2025-06-04 17:55:07,241 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,322 | INFO     | [payload] control thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,322 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,424 | INFO     | [data] copytool_in thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,431 | INFO     | [payload] validate_post thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,593 | INFO     | [job] validate thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:07,639 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 20:35:20] 2025-06-04 17:55:07,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:08,056 | INFO     | [job] control thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:08,115 | INFO     | [job] queue monitor thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:08,244 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:08,764 | INFO     | [data] copytool_out thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:11,648 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 20:35:20] 2025-06-04 17:55:12,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366593775424)>', '<ExcThread(monitor, started 140366133044992)>']
[2025-06-04 20:35:20] 2025-06-04 17:55:12,466 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 20:35:20] 2025-06-04 17:55:12,466 | INFO     | [monitor] control thread has ended
[2025-06-04 20:35:20] 2025-06-04 17:55:17,121 | INFO     | all workflow threads have been joined
[2025-06-04 20:35:20] 2025-06-04 17:55:17,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 20:35:20] 2025-06-04 17:55:17,121 | INFO     | traces error code: 0
[2025-06-04 20:35:20] 2025-06-04 17:55:17,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 20:35:20] 2025-06-04 17:55:17,418 [wrapper] ==== pilot stdout END ====
[2025-06-04 20:35:20] 2025-06-04 17:55:17,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 20:35:20] 2025-06-04 17:55:17,493 [wrapper] pilotpid: 8565
[2025-06-04 20:35:20] 2025-06-04 17:55:17,534 [wrapper] Pilot exit status: 0
[2025-06-04 20:35:20] 2025-06-04 17:55:17,852 [wrapper] pandaids: 6678152442
[2025-06-04 20:35:20] 2025-06-04 17:55:18,554 [wrapper] cleanup supervisor_pilot 26914 8566
[2025-06-04 20:35:20] 2025-06-04 17:55:18,597 [wrapper] Test setup, not cleaning
[2025-06-04 20:35:20] 2025-06-04 17:55:18,638 [wrapper] apfmon messages muted
[2025-06-04 20:35:20] 2025-06-04 17:55:18,691 [wrapper] ==== wrapper stdout END ====
[2025-06-04 20:35:20] 2025-06-04 17:55:18,807 [wrapper] ==== wrapper stderr END ====
[2025-06-04 20:35:20]  *** Error codes and diagnostics ***
[2025-06-04 20:35:20]     "exeErrorCode": 0,
[2025-06-04 20:35:20]     "exeErrorDiag": "",
[2025-06-04 20:35:20]     "pilotErrorCode": 0,
[2025-06-04 20:35:20]     "pilotErrorDiag": "",
[2025-06-04 20:35:20]  *** Listing of results directory ***
[2025-06-04 20:35:20] total 385860
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:57 pilot3.tar.gz
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc      5111 Jun  4 00:36 queuedata.json
[2025-06-04 20:35:20] -rwx------. 1 boinc boinc     37140 Jun  4 00:37 runpilot2-wrapper.sh
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc       100 Jun  4 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 20:35:20] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 16:31 run_atlas
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc       105 Jun  4 16:31 job.xml
[2025-06-04 20:35:20] -rw-r--r--. 2 boinc boinc 213501630 Jun  4 16:31 EVNT.45006593._001893.pool.root.1
[2025-06-04 20:35:20] drwxrwx--x. 2 boinc boinc        68 Jun  4 16:31 shared
[2025-06-04 20:35:20] -rw-r--r--. 2 boinc boinc    508876 Jun  4 16:31 input.tar.gz
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc      6393 Jun  4 16:31 init_data.xml
[2025-06-04 20:35:20] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:31 start_atlas.sh
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc         0 Jun  4 16:31 boinc_lockfile
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc      2525 Jun  4 16:31 pandaJob.out
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc    986819 Jun  4 16:31 agis_schedconf.cvmfs.json
[2025-06-04 20:35:20] drwx------. 4 boinc boinc      4096 Jun  4 16:31 pilot3
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc 174952009 Jun  4 19:52 HITS.45006595._047219.pool.root.1
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc       531 Jun  4 19:52 boinc_task_state.xml
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc      1015 Jun  4 19:53 memory_monitor_summary.json
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc   1598969 Jun  4 19:53 agis_ddmendpoints.agis.ALL.json
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc    367514 Jun  4 19:53 log.45006595._047219.job.log.tgz.1
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc        95 Jun  4 19:54 pilot_heartbeat.json
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc      7683 Jun  4 19:55 heartbeat.json
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc      4417 Jun  4 19:55 pilotlog.txt
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc   1062385 Jun  4 19:55 log.45006595._047219.job.log.1
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc       357 Jun  4 19:55 output.list
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc       620 Jun  4 19:55 runtime_log
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc   1443840 Jun  4 19:55 result.tar.gz
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc      8673 Jun  4 19:55 runtime_log.err
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc       657 Jun  4 19:55 I1kKDm0Qpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjOmKDmTg4tUo.diag
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc      8192 Jun  4 20:35 boinc_mmap_file
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc        28 Jun  4 20:35 wrapper_checkpoint.txt
[2025-06-04 20:35:20] -rw-r--r--. 1 boinc boinc     20478 Jun  4 20:35 stderr.txt
[2025-06-04 20:35:20] HITS file was successfully produced:
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc 174952009 Jun  4 19:52 shared/HITS.pool.root.1
[2025-06-04 20:35:20]  *** Contents of shared directory: ***
[2025-06-04 20:35:20] total 381280
[2025-06-04 20:35:20] -rw-r--r--. 2 boinc boinc 213501630 Jun  4 16:31 ATLAS.root_0
[2025-06-04 20:35:20] -rw-r--r--. 2 boinc boinc    508876 Jun  4 16:31 input.tar.gz
[2025-06-04 20:35:20] -rw-r--r--. 2 boinc boinc     15093 Jun  4 16:31 start_atlas.sh
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc 174952009 Jun  4 19:52 HITS.pool.root.1
[2025-06-04 20:35:20] -rw-------. 1 boinc boinc   1443840 Jun  4 19:55 result.tar.gz
20:35:22 (4320): run_atlas exited; CPU time 46040.754998
20:35:22 (4320): called boinc_finish(0)

</stderr_txt>
]]>

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