Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:57:00 (10655): wrapper (7.7.26015): starting
13:57:00 (10655): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:57:00] Arguments: --nthreads 8
[2025-06-04 13:57:00] Threads: 8
[2025-06-04 13:57:00] Checking for CVMFS
[2025-06-04 13:57:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:57:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:57:02] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:57:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:57:03] 2.11.2.0 12075 33171 88192 146779 0 137 13649342 25165825 3746 130560 0 17488754 99.768 20503055 2176 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:57:03] CVMFS is ok
[2025-06-04 13:57:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:57:03] Checking for apptainer binary...
[2025-06-04 13:57:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:57:03] Running /usr/bin/apptainer --version
[2025-06-04 13:57:03] apptainer version 1.3.2-1.el7
[2025-06-04 13:57:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:58:26] cg-vwn258.simple-grid.lan
[2025-06-04 13:58:26] apptainer works
[2025-06-04 13:58:26] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:58:26] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:58:26] Starting ATLAS job with PandaID=6677917917
[2025-06-04 13:58:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 21:53:50]  *** The last 200 lines of the pilot log: ***
[2025-06-04 21:53:50] 2025-06-04 16:06:22,459 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 21:53:50] 2025-06-04 16:06:22,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 21:53:50] 2025-06-04 16:06:22,460 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 21:53:50] 2025-06-04 16:06:22,460 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 21:53:50] 2025-06-04 16:06:22,465 | INFO     | fitting pss+swap vs Time
[2025-06-04 21:53:50] 2025-06-04 16:06:22,466 | INFO     | sum of square deviations: 3922276332.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,468 | INFO     | sum of deviations: 80636476816.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,469 | INFO     | mean x: 1749045987.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,469 | INFO     | mean y: 2440179.3261802574
[2025-06-04 21:53:50] 2025-06-04 16:06:22,469 | INFO     | -- intersect: -35955481762.63131
[2025-06-04 21:53:50] 2025-06-04 16:06:22,469 | INFO     | intersect: -35955481762.63131
[2025-06-04 21:53:50] 2025-06-04 16:06:22,470 | INFO     | chi2: 6.198446278197833
[2025-06-04 21:53:50] 2025-06-04 16:06:22,470 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,472 | INFO     | sum of deviations: 94411882762.99998
[2025-06-04 21:53:50] 2025-06-04 16:06:22,472 | INFO     | mean x: 1749045834.5
[2025-06-04 21:53:50] 2025-06-04 16:06:22,473 | INFO     | mean y: 2448512.6052631577
[2025-06-04 21:53:50] 2025-06-04 16:06:22,473 | INFO     | -- intersect: -44929291618.78377
[2025-06-04 21:53:50] 2025-06-04 16:06:22,473 | INFO     | intersect: -44929291618.78377
[2025-06-04 21:53:50] 2025-06-04 16:06:22,473 | INFO     | chi2: 5.45804295482609
[2025-06-04 21:53:50] 2025-06-04 16:06:22,474 | INFO     | current chi2=5.45804295482609 (change=11.944982502728276 %)
[2025-06-04 21:53:50] 2025-06-04 16:06:22,474 | INFO     | right removable region: 227
[2025-06-04 21:53:50] 2025-06-04 16:06:22,474 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,476 | INFO     | sum of deviations: 1330946769.4999962
[2025-06-04 21:53:50] 2025-06-04 16:06:22,476 | INFO     | mean x: 1749046139.5
[2025-06-04 21:53:50] 2025-06-04 16:06:22,476 | INFO     | mean y: 2489070.557017544
[2025-06-04 21:53:50] 2025-06-04 16:06:22,476 | INFO     | -- intersect: -630924468.6505623
[2025-06-04 21:53:50] 2025-06-04 16:06:22,477 | INFO     | intersect: -630924468.6505623
[2025-06-04 21:53:50] 2025-06-04 16:06:22,477 | INFO     | chi2: 1.6254238661248808
[2025-06-04 21:53:50] 2025-06-04 16:06:22,477 | INFO     | current chi2=1.6254238661248808 (change=73.7769145173996 %)
[2025-06-04 21:53:50] 2025-06-04 16:06:22,478 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,479 | INFO     | sum of deviations: -28015051052.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,480 | INFO     | mean x: 1749046292.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,480 | INFO     | mean y: 2507870.547085202
[2025-06-04 21:53:50] 2025-06-04 16:06:22,480 | INFO     | -- intersect: 14252297160.102127
[2025-06-04 21:53:50] 2025-06-04 16:06:22,480 | INFO     | intersect: 14252297160.102127
[2025-06-04 21:53:50] 2025-06-04 16:06:22,481 | INFO     | chi2: 0.8650384122794103
[2025-06-04 21:53:50] 2025-06-04 16:06:22,481 | INFO     | current chi2=0.8650384122794103 (change=46.7807486830054 %)
[2025-06-04 21:53:50] 2025-06-04 16:06:22,481 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 21:53:50] 2025-06-04 16:06:22,483 | INFO     | sum of deviations: -32107003489.499996
[2025-06-04 21:53:50] 2025-06-04 16:06:22,483 | INFO     | mean x: 1749046444.5
[2025-06-04 21:53:50] 2025-06-04 16:06:22,483 | INFO     | mean y: 2510593.3256880734
[2025-06-04 21:53:50] 2025-06-04 16:06:22,484 | INFO     | -- intersect: 17483352733.036705
[2025-06-04 21:53:50] 2025-06-04 16:06:22,484 | INFO     | intersect: 17483352733.036705
[2025-06-04 21:53:50] 2025-06-04 16:06:22,484 | INFO     | chi2: 0.8296131674238143
[2025-06-04 21:53:50] 2025-06-04 16:06:22,484 | INFO     | current chi2=0.8296131674238143 (change=4.0952221719552355 %)
[2025-06-04 21:53:50] 2025-06-04 16:06:22,484 | INFO     | left removable region: 30
[2025-06-04 21:53:50] 2025-06-04 16:06:22,485 | INFO     | sum of square deviations: 2370641658.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,486 | INFO     | sum of deviations: -14184673613.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,487 | INFO     | mean x: 1749046719.0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,487 | INFO     | mean y: 2519160.878172589
[2025-06-04 21:53:50] 2025-06-04 16:06:22,487 | INFO     | -- intersect: 10467895384.72901
[2025-06-04 21:53:50] 2025-06-04 16:06:22,487 | INFO     | intersect: 10467895384.72901
[2025-06-04 21:53:50] 2025-06-04 16:06:22,488 | INFO     | chi2: 0.021908095979242342
[2025-06-04 21:53:50] 2025-06-04 16:06:22,488 | INFO     | -- intersect: 10467895384.72901
[2025-06-04 21:53:50] 2025-06-04 16:06:22,488 | INFO     | current memory leak: -5.98 B/s (using 197 data points, chi2=0.02)
[2025-06-04 21:53:50] 2025-06-04 16:06:22,489 | INFO     | ..............................
[2025-06-04 21:53:50] 2025-06-04 16:06:22,489 | INFO     | . Timing measurements:
[2025-06-04 21:53:50] 2025-06-04 16:06:22,489 | INFO     | . get job = 0 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,489 | INFO     | . initial setup = 8 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,489 | INFO     | . payload setup = 133 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,490 | INFO     | . stage-in = 0 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,490 | INFO     | . payload execution = 14329 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,490 | INFO     | . stage-out = 2 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,490 | INFO     | . log creation = 0 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,490 | INFO     | ..............................
[2025-06-04 21:53:50] 2025-06-04 16:06:22,639 | INFO     | 
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | job summary report
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | --------------------------------------------------
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | PanDA job id: 6677917917
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | task id: 45006595
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | errors: (none)
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | pilot state: finished 
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | transexitcode: 0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,640 | INFO     | exeerrorcode: 0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | exeerrordiag: 
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | exitcode: 0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | exitmsg: OK
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | cpuconsumptiontime: 50495 s
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | nevents: 400
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | neventsw: 0
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | pid: 27060
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | pgrp: 27060
[2025-06-04 21:53:50] 2025-06-04 16:06:22,641 | INFO     | corecount: 8
[2025-06-04 21:53:50] 2025-06-04 16:06:22,642 | INFO     | event service: False
[2025-06-04 21:53:50] 2025-06-04 16:06:22,642 | INFO     | sizes: {0: 2397170, 1: 2397369, 2: 2397369, 12: 2397397, 23: 2397425, 34: 2397453, 44: 2397609, 55: 2397637, 66: 2397665, 76: 2397899, 77: 2397955, 14467: 2428145,
[2025-06-04 21:53:50] 2025-06-04 16:06:22,642 | INFO     | --------------------------------------------------
[2025-06-04 21:53:50] 2025-06-04 16:06:22,642 | INFO     | 
[2025-06-04 21:53:50] 2025-06-04 16:06:22,642 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 21:53:50] 2025-06-04 16:06:23,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,077 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,077 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,077 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 21:53:50] 2025-06-04 16:06:23,079 | INFO     | job 6677917917 has completed (purged errors)
[2025-06-04 21:53:50] 2025-06-04 16:06:23,080 | INFO     | overall cleanup function is called
[2025-06-04 21:53:50] 2025-06-04 16:06:24,088 | INFO     | --- collectZombieJob: --- 10, [27060]
[2025-06-04 21:53:50] 2025-06-04 16:06:24,089 | INFO     | zombie collector waiting for pid 27060
[2025-06-04 21:53:50] 2025-06-04 16:06:24,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 21:53:50] 2025-06-04 16:06:24,089 | INFO     | collected zombie processes
[2025-06-04 21:53:50] 2025-06-04 16:06:24,089 | INFO     | will attempt to kill all subprocesses of pid=27060
[2025-06-04 21:53:50] 2025-06-04 16:06:24,208 | INFO     | process IDs to be killed: [27060] (in reverse order)
[2025-06-04 21:53:50] 2025-06-04 16:06:24,997 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 21:53:50] 2025-06-04 16:06:24,997 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 21:53:50] 2025-06-04 16:06:25,001 | INFO     | did not find any defunct processes belonging to 27060
[2025-06-04 21:53:50] 2025-06-04 16:06:25,004 | INFO     | did not find any defunct processes belonging to 27060
[2025-06-04 21:53:50] 2025-06-04 16:06:25,004 | INFO     | ready for new job
[2025-06-04 21:53:50] 2025-06-04 16:06:25,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 21:53:50] 2025-06-04 16:06:25,007 | INFO     | **************************************
[2025-06-04 21:53:50] 2025-06-04 16:06:25,007 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 21:53:50] 2025-06-04 16:06:25,007 | INFO     | **************************************
[2025-06-04 21:53:50] 2025-06-04 16:06:25,007 | INFO     | 
[2025-06-04 21:53:50] 2025-06-04 16:06:25,008 | INFO     | pilot is running in a VM
[2025-06-04 21:53:50] 2025-06-04 16:06:25,008 | INFO     | architecture information:
[2025-06-04 21:53:50] 2025-06-04 16:06:25,023 | INFO     | executing command: cat /etc/os-release
[2025-06-04 21:53:50] 2025-06-04 16:06:25,233 | INFO     | cat /etc/os-release:
[2025-06-04 21:53:50] NAME="CentOS Linux"
[2025-06-04 21:53:50] VERSION="7 (Core)"
[2025-06-04 21:53:50] ID="centos"
[2025-06-04 21:53:50] ID_LIKE="rhel fedora"
[2025-06-04 21:53:50] VERSION_ID="7"
[2025-06-04 21:53:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 21:53:50] ANSI_COLOR="0;31"
[2025-06-04 21:53:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 21:53:50] HOME_URL="https://www.centos.org/"
[2025-06-04 21:53:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 21:53:50] 
[2025-06-04 21:53:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 21:53:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 21:53:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 21:53:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 21:53:50] 
[2025-06-04 21:53:50] 2025-06-04 16:06:25,233 | INFO     | **************************************
[2025-06-04 21:53:50] 2025-06-04 16:06:25,737 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 21:53:50] 2025-06-04 16:06:25,913 | INFO     | sufficient remaining disk space (496890806272 B)
[2025-06-04 21:53:50] 2025-06-04 16:06:25,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 21:53:50] 2025-06-04 16:06:25,914 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 21:53:50] 2025-06-04 16:06:25,914 | INFO     | update_server=False
[2025-06-04 21:53:50] 2025-06-04 16:06:25,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 21:53:50] 2025-06-04 16:06:25,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 21:53:50] 2025-06-04 16:06:25,915 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:53:50] 2025-06-04 16:06:25,915 | INFO     | aborting loop
[2025-06-04 21:53:50] 2025-06-04 16:06:25,920 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 21:53:50] 2025-06-04 16:06:25,921 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 21:53:50] 2025-06-04 16:06:25,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 21:53:50] 2025-06-04 16:06:25,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 21:53:50] 2025-06-04 16:06:25,960 | INFO     | all job control threads have been joined
[2025-06-04 21:53:50] 2025-06-04 16:06:25,993 | INFO     | all payload control threads have been joined
[2025-06-04 21:53:50] 2025-06-04 16:06:26,561 | INFO     | all data control threads have been joined
[2025-06-04 21:53:50] 2025-06-04 16:06:26,919 | INFO     | [job] retrieve thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:26,922 | INFO     | [job] job monitor thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:26,966 | INFO     | [job] control thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:26,999 | INFO     | [payload] control thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,171 | INFO     | [payload] failed_post thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,445 | INFO     | [data] copytool_in thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,529 | INFO     | [payload] validate_post thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,540 | INFO     | [job] validate thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,567 | INFO     | [data] control thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 21:53:50] 2025-06-04 16:06:27,752 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 21:53:50] 2025-06-04 16:06:27,921 | INFO     | [data] copytool_out thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:27,955 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:28,260 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:28,659 | INFO     | [job] queue monitor thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:31,914 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:36,504 | INFO     | job.realtimelogging is not enabled
[2025-06-04 21:53:50] 2025-06-04 16:06:37,511 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 21:53:50] 2025-06-04 16:06:38,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512696452928)>', '<ExcThread(monitor, started 140512262612736)>']
[2025-06-04 21:53:50] 2025-06-04 16:06:38,998 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 21:53:50] 2025-06-04 16:06:38,999 | INFO     | [monitor] control thread has ended
[2025-06-04 21:53:50] 2025-06-04 16:06:43,796 | INFO     | all workflow threads have been joined
[2025-06-04 21:53:50] 2025-06-04 16:06:43,797 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 21:53:50] 2025-06-04 16:06:43,797 | INFO     | traces error code: 0
[2025-06-04 21:53:50] 2025-06-04 16:06:43,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 21:53:50] 2025-06-04 16:06:44,062 [wrapper] ==== pilot stdout END ====
[2025-06-04 21:53:50] 2025-06-04 16:06:44,116 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 21:53:50] 2025-06-04 16:06:44,203 [wrapper] pilotpid: 16433
[2025-06-04 21:53:50] 2025-06-04 16:06:44,282 [wrapper] Pilot exit status: 0
[2025-06-04 21:53:50] 2025-06-04 16:06:44,678 [wrapper] pandaids: 6677917917
[2025-06-04 21:53:50] 2025-06-04 16:06:45,498 [wrapper] cleanup supervisor_pilot  7521 16434
[2025-06-04 21:53:50] 2025-06-04 16:06:45,553 [wrapper] Test setup, not cleaning
[2025-06-04 21:53:50] 2025-06-04 16:06:45,603 [wrapper] apfmon messages muted
[2025-06-04 21:53:50] 2025-06-04 16:06:45,675 [wrapper] ==== wrapper stdout END ====
[2025-06-04 21:53:50] 2025-06-04 16:06:45,716 [wrapper] ==== wrapper stderr END ====
[2025-06-04 21:53:50]  *** Error codes and diagnostics ***
[2025-06-04 21:53:50]     "exeErrorCode": 0,
[2025-06-04 21:53:50]     "exeErrorDiag": "",
[2025-06-04 21:53:50]     "pilotErrorCode": 0,
[2025-06-04 21:53:50]     "pilotErrorDiag": "",
[2025-06-04 21:53:50]  *** Listing of results directory ***
[2025-06-04 21:53:50] total 393516
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:00 queuedata.json
[2025-06-04 21:53:50] -rwx------. 1 boinc boinc     37140 Jun  3 20:00 runpilot2-wrapper.sh
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 21:53:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:57 run_atlas
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:57 job.xml
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc      6390 Jun  4 13:57 init_data.xml
[2025-06-04 21:53:50] -rw-r--r--. 2 boinc boinc 216791648 Jun  4 13:57 EVNT.45006593._001659.pool.root.1
[2025-06-04 21:53:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:57 start_atlas.sh
[2025-06-04 21:53:50] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:57 shared
[2025-06-04 21:53:50] -rw-r--r--. 2 boinc boinc    508878 Jun  4 13:57 input.tar.gz
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:57 boinc_lockfile
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc      2525 Jun  4 13:58 pandaJob.out
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc    986812 Jun  4 14:01 agis_schedconf.cvmfs.json
[2025-06-04 21:53:50] drwx------. 4 boinc boinc      4096 Jun  4 14:01 pilot3
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc 179051543 Jun  4 18:04 HITS.45006595._041424.pool.root.1
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc       531 Jun  4 18:04 boinc_task_state.xml
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc      1022 Jun  4 18:04 memory_monitor_summary.json
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc   1598969 Jun  4 18:04 agis_ddmendpoints.agis.ALL.json
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc    378413 Jun  4 18:04 log.45006595._041424.job.log.tgz.1
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc        95 Jun  4 18:05 pilot_heartbeat.json
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc      7695 Jun  4 18:06 heartbeat.json
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc      4611 Jun  4 18:06 pilotlog.txt
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc   1266660 Jun  4 18:06 log.45006595._041424.job.log.1
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc       357 Jun  4 18:06 output.list
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc       620 Jun  4 18:06 runtime_log
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc   1669120 Jun  4 18:06 result.tar.gz
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc      8659 Jun  4 18:06 runtime_log.err
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc       656 Jun  4 18:06 EUHMDmH7kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2WlKDmYvBfym.diag
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc        28 Jun  4 21:53 wrapper_checkpoint.txt
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc      8192 Jun  4 21:53 boinc_mmap_file
[2025-06-04 21:53:50] -rw-r--r--. 1 boinc boinc     20502 Jun  4 21:53 stderr.txt
[2025-06-04 21:53:50] HITS file was successfully produced:
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc 179051543 Jun  4 18:04 shared/HITS.pool.root.1
[2025-06-04 21:53:50]  *** Contents of shared directory: ***
[2025-06-04 21:53:50] total 388716
[2025-06-04 21:53:50] -rw-r--r--. 2 boinc boinc 216791648 Jun  4 13:57 ATLAS.root_0
[2025-06-04 21:53:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:57 start_atlas.sh
[2025-06-04 21:53:50] -rw-r--r--. 2 boinc boinc    508878 Jun  4 13:57 input.tar.gz
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc 179051543 Jun  4 18:04 HITS.pool.root.1
[2025-06-04 21:53:50] -rw-------. 1 boinc boinc   1669120 Jun  4 18:06 result.tar.gz
21:53:52 (10655): run_atlas exited; CPU time 50698.137467
21:53:52 (10655): called boinc_finish(0)

</stderr_txt>
]]>

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