Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:20:33 (884035): wrapper (7.7.26015): starting
23:20:33 (884035): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 23:20:33] Arguments: --nthreads 12
[2025-06-06 23:20:33] Threads: 12
[2025-06-06 23:20:33] Checking for CVMFS
[2025-06-06 23:20:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 23:20:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 23:20:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 23:20:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 23:20:33] 2.12.7.0 4773 2999 62588 146879 0 185 2823024 4096001 664 130560 0 2393260 99.991 717137 151 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 23:20:33] CVMFS is ok
[2025-06-06 23:20:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 23:20:33] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 23:20:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 23:20:33] Further information can be found at the LHC@home message board.
[2025-06-06 23:20:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 23:20:33] Checking for apptainer binary...
[2025-06-06 23:20:33] apptainer is not installed, using version from CVMFS
[2025-06-06 23:20:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 23:20:33] proliant-ml350-g6
[2025-06-06 23:20:33] apptainer works
[2025-06-06 23:20:33] Set ATHENA_PROC_NUMBER=12
[2025-06-06 23:20:33] Set ATHENA_CORE_NUMBER=12
[2025-06-06 23:20:33] Starting ATLAS job with PandaID=6677975867
[2025-06-06 23:20:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-07 03:42:20]  *** The last 200 lines of the pilot log: ***
[2025-06-07 03:42:20] 2025-06-07 03:41:53,559 | INFO     | .. there are 2 such processes running
[2025-06-07 03:42:20] 2025-06-07 03:41:54,735 | INFO     | monitor loop #1123: job 0:6677975867 is in state 'finished'
[2025-06-07 03:42:20] 2025-06-07 03:41:54,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-07 03:42:20] 2025-06-07 03:41:57,238 | INFO     | monitor loop #1124: job 0:6677975867 is in state 'finished'
[2025-06-07 03:42:20] 2025-06-07 03:41:57,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-07 03:42:20] 2025-06-07 03:41:59,741 | INFO     | monitor loop #1125: job 0:6677975867 is in state 'finished'
[2025-06-07 03:42:20] 2025-06-07 03:41:59,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-07 03:42:20] 2025-06-07 03:42:00,676 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-07 03:42:20] 2025-06-07 03:42:00,676 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6677975867/memory_monitor_summary.json (trf name=prmon)
[2025-06-07 03:42:20] 2025-06-07 03:42:00,677 | INFO     | extracted standard info from prmon json
[2025-06-07 03:42:20] 2025-06-07 03:42:00,677 | INFO     | extracted standard memory fields from prmon json
[2025-06-07 03:42:20] 2025-06-07 03:42:00,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-07 03:42:20] 2025-06-07 03:42:00,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-07 03:42:20] 2025-06-07 03:42:00,677 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-07 03:42:20] 2025-06-07 03:42:00,683 | INFO     | fitting pss+swap vs Time
[2025-06-07 03:42:20] 2025-06-07 03:42:00,683 | INFO     | sum of square deviations: 5202255680.0
[2025-06-07 03:42:20] 2025-06-07 03:42:00,685 | INFO     | sum of deviations: -13610674928.5
[2025-06-07 03:42:20] 2025-06-07 03:42:00,685 | INFO     | mean x: 1749259834.5
[2025-06-07 03:42:20] 2025-06-07 03:42:00,685 | INFO     | mean y: 2692859.73828125
[2025-06-07 03:42:20] 2025-06-07 03:42:00,685 | INFO     | -- intersect: 4579285868.1121435
[2025-06-07 03:42:20] 2025-06-07 03:42:00,685 | INFO     | intersect: 4579285868.1121435
[2025-06-07 03:42:20] 2025-06-07 03:42:00,686 | INFO     | chi2: 1.3261560664136478
[2025-06-07 03:42:20] 2025-06-07 03:42:00,686 | INFO     | sum of square deviations: 4903347750.0
[2025-06-07 03:42:20] 2025-06-07 03:42:00,688 | INFO     | sum of deviations: -13317507068.000002
[2025-06-07 03:42:20] 2025-06-07 03:42:00,688 | INFO     | mean x: 1749259682.0
[2025-06-07 03:42:20] 2025-06-07 03:42:00,688 | INFO     | mean y: 2693009.3665338648
[2025-06-07 03:42:20] 2025-06-07 03:42:00,688 | INFO     | -- intersect: 4753687506.7081585
[2025-06-07 03:42:20] 2025-06-07 03:42:00,688 | INFO     | intersect: 4753687506.7081585
[2025-06-07 03:42:20] 2025-06-07 03:42:00,689 | INFO     | chi2: 1.3255633270236735
[2025-06-07 03:42:20] 2025-06-07 03:42:00,689 | INFO     | current chi2=1.3255633270236735 (change=0.04469605086354894 %)
[2025-06-07 03:42:20] 2025-06-07 03:42:00,689 | INFO     | right removable region: 250
[2025-06-07 03:42:20] 2025-06-07 03:42:00,689 | INFO     | sum of square deviations: 4903347750.0
[2025-06-07 03:42:20] 2025-06-07 03:42:00,691 | INFO     | sum of deviations: -46087950797.0
[2025-06-07 03:42:20] 2025-06-07 03:42:00,691 | INFO     | mean x: 1749259987.0
[2025-06-07 03:42:20] 2025-06-07 03:42:00,691 | INFO     | mean y: 2709227.442231076
[2025-06-07 03:42:20] 2025-06-07 03:42:00,691 | INFO     | -- intersect: 16444498046.523409
[2025-06-07 03:42:20] 2025-06-07 03:42:00,691 | INFO     | intersect: 16444498046.523409
[2025-06-07 03:42:20] 2025-06-07 03:42:00,692 | INFO     | chi2: 0.10366903087544309
[2025-06-07 03:42:20] 2025-06-07 03:42:00,692 | INFO     | current chi2=0.10366903087544309 (change=92.18274277809569 %)
[2025-06-07 03:42:20] 2025-06-07 03:42:00,692 | INFO     | sum of square deviations: 4616114457.5
[2025-06-07 03:42:20] 2025-06-07 03:42:00,694 | INFO     | sum of deviations: -42350790097.50001
[2025-06-07 03:42:20] 2025-06-07 03:42:00,694 | INFO     | mean x: 1749260139.5
[2025-06-07 03:42:20] 2025-06-07 03:42:00,694 | INFO     | mean y: 2707240.1585365855
[2025-06-07 03:42:20] 2025-06-07 03:42:00,694 | INFO     | -- intersect: 16051388371.433992
[2025-06-07 03:42:20] 2025-06-07 03:42:00,695 | INFO     | intersect: 16051388371.433992
[2025-06-07 03:42:20] 2025-06-07 03:42:00,695 | INFO     | chi2: 0.10306059694382912
[2025-06-07 03:42:20] 2025-06-07 03:42:00,695 | INFO     | current chi2=0.10306059694382912 (change=0.5869003756242276 %)
[2025-06-07 03:42:20] 2025-06-07 03:42:00,695 | INFO     | left removable region: 20
[2025-06-07 03:42:20] 2025-06-07 03:42:00,696 | INFO     | sum of square deviations: 3772712597.5
[2025-06-07 03:42:20] 2025-06-07 03:42:00,697 | INFO     | sum of deviations: -32284921762.500004
[2025-06-07 03:42:20] 2025-06-07 03:42:00,697 | INFO     | mean x: 1749260261.5
[2025-06-07 03:42:20] 2025-06-07 03:42:00,697 | INFO     | mean y: 2702388.3695652173
[2025-06-07 03:42:20] 2025-06-07 03:42:00,697 | INFO     | -- intersect: 14971966339.777092
[2025-06-07 03:42:20] 2025-06-07 03:42:00,698 | INFO     | intersect: 14971966339.777092
[2025-06-07 03:42:20] 2025-06-07 03:42:00,698 | INFO     | chi2: 0.09640272476362051
[2025-06-07 03:42:20] 2025-06-07 03:42:00,698 | INFO     | -- intersect: 14971966339.777092
[2025-06-07 03:42:20] 2025-06-07 03:42:00,698 | INFO     | current memory leak: -8.56 B/s (using 230 data points, chi2=0.10)
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | ..............................
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . Timing measurements:
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . get job = 0 s
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . initial setup = 1 s
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . payload setup = 2 s
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . stage-in = 0 s
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . payload execution = 15609 s
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . stage-out = 0 s
[2025-06-07 03:42:20] 2025-06-07 03:42:00,699 | INFO     | . log creation = 0 s
[2025-06-07 03:42:20] 2025-06-07 03:42:00,700 | INFO     | ..............................
[2025-06-07 03:42:20] 2025-06-07 03:42:01,215 | INFO     | 
[2025-06-07 03:42:20] 2025-06-07 03:42:01,215 | INFO     | job summary report
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | --------------------------------------------------
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | PanDA job id: 6677975867
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | task id: 45006595
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | errors: (none)
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | pilot state: finished 
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | transexitcode: 0
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | exeerrorcode: 0
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | exeerrordiag: 
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | exitcode: 0
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | exitmsg: OK
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | cpuconsumptiontime: 53772 s
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | nevents: 400
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | neventsw: 0
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | pid: 894159
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | pgrp: 894159
[2025-06-07 03:42:20] 2025-06-07 03:42:01,216 | INFO     | corecount: 12
[2025-06-07 03:42:20] 2025-06-07 03:42:01,217 | INFO     | event service: False
[2025-06-07 03:42:20] 2025-06-07 03:42:01,217 | INFO     | sizes: {0: 2397194, 1: 2397393, 2: 2397599, 11: 2397627, 15615: 2428476, 15616: 2428475, 15617: 2437646, 15618: 2437702, 15669: 2437872}
[2025-06-07 03:42:20] 2025-06-07 03:42:01,217 | INFO     | --------------------------------------------------
[2025-06-07 03:42:20] 2025-06-07 03:42:01,217 | INFO     | 
[2025-06-07 03:42:20] 2025-06-07 03:42:01,217 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,227 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | job 6677975867 has completed (purged errors)
[2025-06-07 03:42:20] 2025-06-07 03:42:01,228 | INFO     | overall cleanup function is called
[2025-06-07 03:42:20] 2025-06-07 03:42:02,235 | INFO     | --- collectZombieJob: --- 10, [894159]
[2025-06-07 03:42:20] 2025-06-07 03:42:02,235 | INFO     | zombie collector waiting for pid 894159
[2025-06-07 03:42:20] 2025-06-07 03:42:02,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-07 03:42:20] 2025-06-07 03:42:02,235 | INFO     | collected zombie processes
[2025-06-07 03:42:20] 2025-06-07 03:42:02,235 | INFO     | will attempt to kill all subprocesses of pid=894159
[2025-06-07 03:42:20] 2025-06-07 03:42:02,278 | INFO     | process IDs to be killed: [894159] (in reverse order)
[2025-06-07 03:42:20] 2025-06-07 03:42:02,297 | WARNING  | found no corresponding commands to process id(s)
[2025-06-07 03:42:20] 2025-06-07 03:42:02,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-07 03:42:20] 2025-06-07 03:42:02,299 | INFO     | did not find any defunct processes belonging to 894159
[2025-06-07 03:42:20] 2025-06-07 03:42:02,300 | INFO     | did not find any defunct processes belonging to 894159
[2025-06-07 03:42:20] 2025-06-07 03:42:02,300 | INFO     | ready for new job
[2025-06-07 03:42:20] 2025-06-07 03:42:02,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-07 03:42:20] 2025-06-07 03:42:02,301 | INFO     | **************************************
[2025-06-07 03:42:20] 2025-06-07 03:42:02,301 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-07 03:42:20] 2025-06-07 03:42:02,301 | INFO     | **************************************
[2025-06-07 03:42:20] 2025-06-07 03:42:02,301 | INFO     | 
[2025-06-07 03:42:20] 2025-06-07 03:42:02,318 | INFO     | architecture information:
[2025-06-07 03:42:20] 2025-06-07 03:42:02,318 | INFO     | executing command: cat /etc/os-release
[2025-06-07 03:42:20] 2025-06-07 03:42:02,324 | INFO     | cat /etc/os-release:
[2025-06-07 03:42:20] NAME="CentOS Linux"
[2025-06-07 03:42:20] VERSION="7 (Core)"
[2025-06-07 03:42:20] ID="centos"
[2025-06-07 03:42:20] ID_LIKE="rhel fedora"
[2025-06-07 03:42:20] VERSION_ID="7"
[2025-06-07 03:42:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-07 03:42:20] ANSI_COLOR="0;31"
[2025-06-07 03:42:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-07 03:42:20] HOME_URL="https://www.centos.org/"
[2025-06-07 03:42:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-07 03:42:20] 
[2025-06-07 03:42:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-07 03:42:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-07 03:42:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-07 03:42:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-07 03:42:20] 
[2025-06-07 03:42:20] 2025-06-07 03:42:02,324 | INFO     | **************************************
[2025-06-07 03:42:20] 2025-06-07 03:42:02,826 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-06-07 03:42:20] 2025-06-07 03:42:02,832 | INFO     | sufficient remaining disk space (165489410048 B)
[2025-06-07 03:42:20] 2025-06-07 03:42:02,832 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-07 03:42:20] 2025-06-07 03:42:02,832 | INFO     | current server update state: UPDATING_FINAL
[2025-06-07 03:42:20] 2025-06-07 03:42:02,833 | INFO     | update_server=False
[2025-06-07 03:42:20] 2025-06-07 03:42:02,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-07 03:42:20] 2025-06-07 03:42:03,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-07 03:42:20] 2025-06-07 03:42:03,254 | INFO     | aborting loop
[2025-06-07 03:42:20] 2025-06-07 03:42:03,404 | INFO     | all job control threads have been joined
[2025-06-07 03:42:20] 2025-06-07 03:42:03,584 | INFO     | found 0 job(s) in 20 queues
[2025-06-07 03:42:20] 2025-06-07 03:42:03,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-07 03:42:20] 2025-06-07 03:42:03,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-07 03:42:20] 2025-06-07 03:42:03,596 | INFO     | all data control threads have been joined
[2025-06-07 03:42:20] 2025-06-07 03:42:03,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-07 03:42:20] 2025-06-07 03:42:03,838 | INFO     | [job] retrieve thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,088 | INFO     | [job] validate thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,173 | INFO     | [payload] validate_post thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,194 | INFO     | all payload control threads have been joined
[2025-06-07 03:42:20] 2025-06-07 03:42:04,258 | INFO     | [job] job monitor thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,273 | INFO     | [payload] validate_pre thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,409 | INFO     | [job] control thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,493 | INFO     | [job] create_data_payload thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,600 | INFO     | [data] control thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,602 | INFO     | [payload] failed_post thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:04,792 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-07 03:42:20] 2025-06-07 03:42:04,899 | INFO     | [data] copytool_in thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:05,118 | INFO     | [payload] execute_payloads thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:05,199 | INFO     | [payload] control thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:05,626 | INFO     | [data] copytool_out thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:05,763 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-07 03:42:20] 2025-06-07 03:42:06,768 | INFO     | [job] queue monitor thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:08,796 | INFO     | [data] queue_monitor thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:13,665 | INFO     | job.realtimelogging is not enabled
[2025-06-07 03:42:20] 2025-06-07 03:42:14,669 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-07 03:42:20] 2025-06-07 03:42:15,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140225441969984)>', '<ExcThread(monitor, started 140224709523200)>']
[2025-06-07 03:42:20] 2025-06-07 03:42:15,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-07 03:42:20] 2025-06-07 03:42:15,644 | INFO     | [monitor] control thread has ended
[2025-06-07 03:42:20] 2025-06-07 03:42:20,665 | INFO     | all workflow threads have been joined
[2025-06-07 03:42:20] 2025-06-07 03:42:20,666 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-07 03:42:20] 2025-06-07 03:42:20,666 | INFO     | traces error code: 0
[2025-06-07 03:42:20] 2025-06-07 03:42:20,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-07 03:42:20] 2025-06-07 03:42:20,729 [wrapper] ==== pilot stdout END ====
[2025-06-07 03:42:20] 2025-06-07 03:42:20,730 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-07 03:42:20] 2025-06-07 03:42:20,732 [wrapper] pilotpid: 887650
[2025-06-07 03:42:20] 2025-06-07 03:42:20,733 [wrapper] Pilot exit status: 0
[2025-06-07 03:42:20] 2025-06-07 03:42:20,737 [wrapper] pandaids: 6677975867
[2025-06-07 03:42:20] 2025-06-07 03:42:20,748 [wrapper] cleanup supervisor_pilot  936729 887651
[2025-06-07 03:42:20] 2025-06-07 03:42:20,750 [wrapper] Test setup, not cleaning
[2025-06-07 03:42:20] 2025-06-07 03:42:20,751 [wrapper] apfmon messages muted
[2025-06-07 03:42:20] 2025-06-07 03:42:20,753 [wrapper] ==== wrapper stdout END ====
[2025-06-07 03:42:20] 2025-06-07 03:42:20,754 [wrapper] ==== wrapper stderr END ====
[2025-06-07 03:42:20]  *** Error codes and diagnostics ***
[2025-06-07 03:42:20]     "exeErrorCode": 0,
[2025-06-07 03:42:20]     "exeErrorDiag": "",
[2025-06-07 03:42:20]     "pilotErrorCode": 0,
[2025-06-07 03:42:20]     "pilotErrorDiag": "",
[2025-06-07 03:42:20]  *** Listing of results directory ***
[2025-06-07 03:42:20] total 393472
[2025-06-07 03:42:20] -rw-r--r-- 1 boinc boinc    495897 Jun  3 18:57 pilot3.tar.gz
[2025-06-07 03:42:20] -rw-r--r-- 1 boinc boinc      5111 Jun  3 18:58 queuedata.json
[2025-06-07 03:42:20] -rwx------ 1 boinc boinc     37140 Jun  3 19:00 runpilot2-wrapper.sh
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc       100 Jun  6 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-07 03:42:20] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 23:20 run_atlas
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc       105 Jun  6 23:20 job.xml
[2025-06-07 03:42:20] -rw-r--r-- 2 boinc boinc 216428484 Jun  6 23:20 EVNT.45006593._001722.pool.root.1
[2025-06-07 03:42:20] -rw-r--r-- 2 boinc boinc     15093 Jun  6 23:20 start_atlas.sh
[2025-06-07 03:42:20] drwxrwx--x 2 boinc boinc      4096 Jun  6 23:20 shared
[2025-06-07 03:42:20] -rw-r--r-- 2 boinc boinc    508884 Jun  6 23:20 input.tar.gz
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc      9277 Jun  6 23:20 init_data.xml
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc         0 Jun  6 23:20 boinc_lockfile
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc      2525 Jun  6 23:20 pandaJob.out
[2025-06-07 03:42:20] -rw------- 1 boinc boinc    985748 Jun  6 23:20 agis_schedconf.cvmfs.json
[2025-06-07 03:42:20] drwx------ 4 boinc boinc      4096 Jun  6 23:20 pilot3
[2025-06-07 03:42:20] -rw------- 1 boinc boinc 178839854 Jun  7 03:40 HITS.45006595._042958.pool.root.1
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc       530 Jun  7 03:40 boinc_task_state.xml
[2025-06-07 03:42:20] -rw------- 1 boinc boinc      1020 Jun  7 03:41 memory_monitor_summary.json
[2025-06-07 03:42:20] -rw------- 1 boinc boinc        95 Jun  7 03:41 pilot_heartbeat.json
[2025-06-07 03:42:20] -rw------- 1 boinc boinc   1598969 Jun  7 03:41 agis_ddmendpoints.agis.ALL.json
[2025-06-07 03:42:20] -rw------- 1 boinc boinc    457921 Jun  7 03:41 log.45006595._042958.job.log.tgz.1
[2025-06-07 03:42:20] -rw------- 1 boinc boinc      7679 Jun  7 03:42 heartbeat.json
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc        28 Jun  7 03:42 wrapper_checkpoint.txt
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc      8192 Jun  7 03:42 boinc_mmap_file
[2025-06-07 03:42:20] -rw------- 1 boinc boinc      4449 Jun  7 03:42 pilotlog.txt
[2025-06-07 03:42:20] -rw------- 1 boinc boinc   1448408 Jun  7 03:42 log.45006595._042958.job.log.1
[2025-06-07 03:42:20] -rw------- 1 boinc boinc       357 Jun  7 03:42 output.list
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc       620 Jun  7 03:42 runtime_log
[2025-06-07 03:42:20] -rw------- 1 boinc boinc   1925120 Jun  7 03:42 result.tar.gz
[2025-06-07 03:42:20] -rw------- 1 boinc boinc       664 Jun  7 03:42 uX4KDmf3lg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDolKDmRzYlLn.diag
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc      9009 Jun  7 03:42 runtime_log.err
[2025-06-07 03:42:20] -rw-rw-r-- 1 boinc boinc     21230 Jun  7 03:42 stderr.txt
[2025-06-07 03:42:20] HITS file was successfully produced:
[2025-06-07 03:42:20] -rw------- 1 boinc boinc 178839854 Jun  7 03:40 shared/HITS.pool.root.1
[2025-06-07 03:42:20]  *** Contents of shared directory: ***
[2025-06-07 03:42:20] total 388412
[2025-06-07 03:42:20] -rw-r--r-- 2 boinc boinc 216428484 Jun  6 23:20 ATLAS.root_0
[2025-06-07 03:42:20] -rw-r--r-- 2 boinc boinc     15093 Jun  6 23:20 start_atlas.sh
[2025-06-07 03:42:20] -rw-r--r-- 2 boinc boinc    508884 Jun  6 23:20 input.tar.gz
[2025-06-07 03:42:20] -rw------- 1 boinc boinc 178839854 Jun  7 03:40 HITS.pool.root.1
[2025-06-07 03:42:20] -rw------- 1 boinc boinc   1925120 Jun  7 03:42 result.tar.gz
03:42:22 (884035): run_atlas exited; CPU time 53897.166366
03:42:22 (884035): called boinc_finish(0)

</stderr_txt>
]]>

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