Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:07:00 (33152): wrapper (7.7.26015): starting
23:07:00 (33152): wrapper: running run_atlas (--nthreads 10)
[2025-06-03 23:07:00] Arguments: --nthreads 10
[2025-06-03 23:07:00] Threads: 10
[2025-06-03 23:07:00] Checking for CVMFS
[2025-06-03 23:07:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 23:07:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 23:07:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 23:07:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 23:07:00] 2.11.2.0 1570 108281 250516 146765 2 572 10465128 18432000 16085 130560 0 481140595 99.066 996654277 35400 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 23:07:00] CVMFS is ok
[2025-06-03 23:07:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 23:07:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 23:07:00] Further information can be found at the LHC@home message board.
[2025-06-03 23:07:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 23:07:00] Checking for apptainer binary...
[2025-06-03 23:07:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 23:07:00] Running /usr/bin/apptainer --version
[2025-06-03 23:07:00] apptainer version 1.3.2-1.el7
[2025-06-03 23:07:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 23:07:03] c-210-9.aglt2.org
[2025-06-03 23:07:03] apptainer works
[2025-06-03 23:07:03] Set ATHENA_PROC_NUMBER=10
[2025-06-03 23:07:03] Set ATHENA_CORE_NUMBER=10
[2025-06-03 23:07:03] Starting ATLAS job with PandaID=6678150962
[2025-06-03 23:07:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 02:47:46]  *** The last 200 lines of the pilot log: ***
[2025-06-04 02:47:46] 2025-06-04 06:47:30,103 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 02:47:46] 2025-06-04 06:47:30,103 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678150962/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,104 | INFO     | extracted standard info from prmon json
[2025-06-04 02:47:46] 2025-06-04 06:47:30,104 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 02:47:46] 2025-06-04 06:47:30,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 02:47:46] 2025-06-04 06:47:30,104 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 02:47:46] 2025-06-04 06:47:30,104 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 02:47:46] 2025-06-04 06:47:30,107 | INFO     | fitting pss+swap vs Time
[2025-06-04 02:47:46] 2025-06-04 06:47:30,107 | INFO     | sum of square deviations: 3124742970.425911
[2025-06-04 02:47:46] 2025-06-04 06:47:30,108 | INFO     | sum of deviations: 43421938550.546295
[2025-06-04 02:47:46] 2025-06-04 06:47:30,109 | INFO     | mean x: 1749013070.7685184
[2025-06-04 02:47:46] 2025-06-04 06:47:30,109 | INFO     | mean y: 2521503.550925926
[2025-06-04 02:47:46] 2025-06-04 06:47:30,109 | INFO     | -- intersect: -24302049720.96208
[2025-06-04 02:47:46] 2025-06-04 06:47:30,109 | INFO     | intersect: -24302049720.96208
[2025-06-04 02:47:46] 2025-06-04 06:47:30,109 | INFO     | chi2: 2.4384142957891326
[2025-06-04 02:47:46] 2025-06-04 06:47:30,110 | INFO     | sum of square deviations: 2912738080.05687
[2025-06-04 02:47:46] 2025-06-04 06:47:30,111 | INFO     | sum of deviations: 56668757962.77252
[2025-06-04 02:47:46] 2025-06-04 06:47:30,111 | INFO     | mean x: 1749012918.2748816
[2025-06-04 02:47:46] 2025-06-04 06:47:30,111 | INFO     | mean y: 2530832.9004739337
[2025-06-04 02:47:46] 2025-06-04 06:47:30,111 | INFO     | -- intersect: -34025379337.981262
[2025-06-04 02:47:46] 2025-06-04 06:47:30,111 | INFO     | intersect: -34025379337.981262
[2025-06-04 02:47:46] 2025-06-04 06:47:30,112 | INFO     | chi2: 1.6580611107455105
[2025-06-04 02:47:46] 2025-06-04 06:47:30,112 | INFO     | current chi2=1.6580611107455105 (change=32.00248564779186 %)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,112 | INFO     | sum of square deviations: 2710547327.1698895
[2025-06-04 02:47:46] 2025-06-04 06:47:30,113 | INFO     | sum of deviations: 55024895032.96602
[2025-06-04 02:47:46] 2025-06-04 06:47:30,114 | INFO     | mean x: 1749012765.7815535
[2025-06-04 02:47:46] 2025-06-04 06:47:30,114 | INFO     | mean y: 2529593.0436893203
[2025-06-04 02:47:46] 2025-06-04 06:47:30,114 | INFO     | -- intersect: -35502935625.64776
[2025-06-04 02:47:46] 2025-06-04 06:47:30,114 | INFO     | intersect: -35502935625.64776
[2025-06-04 02:47:46] 2025-06-04 06:47:30,114 | INFO     | chi2: 1.6578083261000307
[2025-06-04 02:47:46] 2025-06-04 06:47:30,114 | INFO     | current chi2=1.6578083261000307 (change=0.015245797868462346 %)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,114 | INFO     | right removable region: 205
[2025-06-04 02:47:46] 2025-06-04 06:47:30,115 | INFO     | sum of square deviations: 2912702700.05687
[2025-06-04 02:47:46] 2025-06-04 06:47:30,116 | INFO     | sum of deviations: 4853810467.312796
[2025-06-04 02:47:46] 2025-06-04 06:47:30,116 | INFO     | mean x: 1749013223.2748816
[2025-06-04 02:47:46] 2025-06-04 06:47:30,117 | INFO     | mean y: 2549007.511848341
[2025-06-04 02:47:46] 2025-06-04 06:47:30,117 | INFO     | -- intersect: -2912056280.0220833
[2025-06-04 02:47:46] 2025-06-04 06:47:30,117 | INFO     | intersect: -2912056280.0220833
[2025-06-04 02:47:46] 2025-06-04 06:47:30,117 | INFO     | chi2: 0.8386806827437965
[2025-06-04 02:47:46] 2025-06-04 06:47:30,117 | INFO     | current chi2=0.8386806827437965 (change=65.60548860822774 %)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,118 | INFO     | sum of square deviations: 2710476567.1698895
[2025-06-04 02:47:46] 2025-06-04 06:47:30,119 | INFO     | sum of deviations: -1117272557.8349533
[2025-06-04 02:47:46] 2025-06-04 06:47:30,119 | INFO     | mean x: 1749013375.7815535
[2025-06-04 02:47:46] 2025-06-04 06:47:30,119 | INFO     | mean y: 2553478.359223301
[2025-06-04 02:47:46] 2025-06-04 06:47:30,119 | INFO     | -- intersect: 723505901.1604201
[2025-06-04 02:47:46] 2025-06-04 06:47:30,120 | INFO     | intersect: 723505901.1604201
[2025-06-04 02:47:46] 2025-06-04 06:47:30,120 | INFO     | chi2: 0.8042862259465426
[2025-06-04 02:47:46] 2025-06-04 06:47:30,120 | INFO     | current chi2=0.8042862259465426 (change=4.1010193158056545 %)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,120 | INFO     | left removable region: 20
[2025-06-04 02:47:46] 2025-06-04 06:47:30,120 | INFO     | sum of square deviations: 1963126555.8162093
[2025-06-04 02:47:46] 2025-06-04 06:47:30,122 | INFO     | sum of deviations: 7755317015.470266
[2025-06-04 02:47:46] 2025-06-04 06:47:30,122 | INFO     | mean x: 1749013345.3135135
[2025-06-04 02:47:46] 2025-06-04 06:47:30,122 | INFO     | mean y: 2567248.4918918917
[2025-06-04 02:47:46] 2025-06-04 06:47:30,122 | INFO     | -- intersect: -6906897104.179399
[2025-06-04 02:47:46] 2025-06-04 06:47:30,122 | INFO     | intersect: -6906897104.179399
[2025-06-04 02:47:46] 2025-06-04 06:47:30,122 | INFO     | chi2: 0.0018164020240076042
[2025-06-04 02:47:46] 2025-06-04 06:47:30,123 | INFO     | -- intersect: -6906897104.179399
[2025-06-04 02:47:46] 2025-06-04 06:47:30,123 | INFO     | current memory leak: 3.95 B/s (using 185 data points, chi2=0.00)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,123 | INFO     | ..............................
[2025-06-04 02:47:46] 2025-06-04 06:47:30,123 | INFO     | . Timing measurements:
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | . get job = 0 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | . initial setup = 3 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | . payload setup = 19 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | . stage-in = 0 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | . payload execution = 13134 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | . stage-out = 2 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | . log creation = 0 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,124 | INFO     | ..............................
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | 
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | job summary report
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | --------------------------------------------------
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | PanDA job id: 6678150962
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | task id: 45006595
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | errors: (none)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | pilot state: finished 
[2025-06-04 02:47:46] 2025-06-04 06:47:30,578 | INFO     | transexitcode: 0
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | exeerrorcode: 0
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | exeerrordiag: 
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | exitcode: 0
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | exitmsg: OK
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | cpuconsumptiontime: 47251 s
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | nevents: 400
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | neventsw: 0
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | pid: 5646
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | pgrp: 5646
[2025-06-04 02:47:46] 2025-06-04 06:47:30,579 | INFO     | corecount: 10
[2025-06-04 02:47:46] 2025-06-04 06:47:30,580 | INFO     | event service: False
[2025-06-04 02:47:46] 2025-06-04 06:47:30,580 | INFO     | sizes: {0: 2405184, 11: 2405184, 12: 2405418, 22: 2405446, 13158: 2435495, 13160: 2444436, 13163: 2444620, 13173: 2444790}
[2025-06-04 02:47:46] 2025-06-04 06:47:30,580 | INFO     | --------------------------------------------------
[2025-06-04 02:47:46] 2025-06-04 06:47:30,580 | INFO     | 
[2025-06-04 02:47:46] 2025-06-04 06:47:30,580 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 02:47:46] 2025-06-04 06:47:30,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,624 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 02:47:46] 2025-06-04 06:47:30,625 | INFO     | job 6678150962 has completed (purged errors)
[2025-06-04 02:47:46] 2025-06-04 06:47:30,625 | INFO     | overall cleanup function is called
[2025-06-04 02:47:46] 2025-06-04 06:47:31,632 | INFO     | --- collectZombieJob: --- 10, [5646]
[2025-06-04 02:47:46] 2025-06-04 06:47:31,633 | INFO     | zombie collector waiting for pid 5646
[2025-06-04 02:47:46] 2025-06-04 06:47:31,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 02:47:46] 2025-06-04 06:47:31,633 | INFO     | collected zombie processes
[2025-06-04 02:47:46] 2025-06-04 06:47:31,633 | INFO     | will attempt to kill all subprocesses of pid=5646
[2025-06-04 02:47:46] 2025-06-04 06:47:31,978 | INFO     | process IDs to be killed: [5646] (in reverse order)
[2025-06-04 02:47:46] 2025-06-04 06:47:32,087 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 02:47:46] 2025-06-04 06:47:32,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 02:47:46] 2025-06-04 06:47:32,099 | INFO     | did not find any defunct processes belonging to 5646
[2025-06-04 02:47:46] 2025-06-04 06:47:32,110 | INFO     | did not find any defunct processes belonging to 5646
[2025-06-04 02:47:46] 2025-06-04 06:47:32,110 | INFO     | ready for new job
[2025-06-04 02:47:46] 2025-06-04 06:47:32,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 02:47:46] 2025-06-04 06:47:32,112 | INFO     | **************************************
[2025-06-04 02:47:46] 2025-06-04 06:47:32,112 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 02:47:46] 2025-06-04 06:47:32,112 | INFO     | **************************************
[2025-06-04 02:47:46] 2025-06-04 06:47:32,112 | INFO     | 
[2025-06-04 02:47:46] 2025-06-04 06:47:32,114 | INFO     | architecture information:
[2025-06-04 02:47:46] 2025-06-04 06:47:32,115 | INFO     | executing command: cat /etc/os-release
[2025-06-04 02:47:46] 2025-06-04 06:47:32,137 | INFO     | cat /etc/os-release:
[2025-06-04 02:47:46] NAME="CentOS Linux"
[2025-06-04 02:47:46] VERSION="7 (Core)"
[2025-06-04 02:47:46] ID="centos"
[2025-06-04 02:47:46] ID_LIKE="rhel fedora"
[2025-06-04 02:47:46] VERSION_ID="7"
[2025-06-04 02:47:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 02:47:46] ANSI_COLOR="0;31"
[2025-06-04 02:47:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 02:47:46] HOME_URL="https://www.centos.org/"
[2025-06-04 02:47:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 02:47:46] 
[2025-06-04 02:47:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 02:47:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 02:47:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 02:47:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 02:47:46] 
[2025-06-04 02:47:46] 2025-06-04 06:47:32,137 | INFO     | **************************************
[2025-06-04 02:47:46] 2025-06-04 06:47:32,640 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 02:47:46] 2025-06-04 06:47:32,665 | INFO     | sufficient remaining disk space (56799264768 B)
[2025-06-04 02:47:46] 2025-06-04 06:47:32,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 02:47:46] 2025-06-04 06:47:32,666 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 02:47:46] 2025-06-04 06:47:32,666 | INFO     | update_server=False
[2025-06-04 02:47:46] 2025-06-04 06:47:32,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 02:47:46] 2025-06-04 06:47:32,671 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 02:47:46] 2025-06-04 06:47:32,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 02:47:46] 2025-06-04 06:47:32,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 02:47:46] 2025-06-04 06:47:32,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:47:46] 2025-06-04 06:47:32,988 | INFO     | aborting loop
[2025-06-04 02:47:46] 2025-06-04 06:47:33,039 | INFO     | all data control threads have been joined
[2025-06-04 02:47:46] 2025-06-04 06:47:33,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 02:47:46] 2025-06-04 06:47:33,106 | INFO     | all job control threads have been joined
[2025-06-04 02:47:46] 2025-06-04 06:47:33,671 | INFO     | [job] retrieve thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:33,855 | INFO     | all payload control threads have been joined
[2025-06-04 02:47:46] 2025-06-04 06:47:33,970 | INFO     | [payload] validate_post thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:33,993 | INFO     | [data] copytool_in thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:33,994 | INFO     | [job] job monitor thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,045 | INFO     | [data] control thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,098 | INFO     | [job] validate thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,112 | INFO     | [job] control thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,309 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,418 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,422 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,491 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,510 | INFO     | [payload] failed_post thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:34,861 | INFO     | [payload] control thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:35,078 | INFO     | [data] copytool_out thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:35,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 02:47:46] 2025-06-04 06:47:35,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:47:46] 2025-06-04 06:47:36,241 | INFO     | [job] queue monitor thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:39,170 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 02:47:46] 2025-06-04 06:47:40,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140521571800896)>', '<ExcThread(monitor, started 140520995157760)>']
[2025-06-04 02:47:46] 2025-06-04 06:47:40,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 02:47:46] 2025-06-04 06:47:40,706 | INFO     | [monitor] control thread has ended
[2025-06-04 02:47:46] 2025-06-04 06:47:45,703 | INFO     | all workflow threads have been joined
[2025-06-04 02:47:46] 2025-06-04 06:47:45,703 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 02:47:46] 2025-06-04 06:47:45,703 | INFO     | traces error code: 0
[2025-06-04 02:47:46] 2025-06-04 06:47:45,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 02:47:46] 2025-06-04 06:47:45,894 [wrapper] ==== pilot stdout END ====
[2025-06-04 02:47:46] 2025-06-04 06:47:45,898 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 02:47:46] 2025-06-04 06:47:45,902 [wrapper] pilotpid: 37054
[2025-06-04 02:47:46] 2025-06-04 06:47:45,905 [wrapper] Pilot exit status: 0
[2025-06-04 02:47:46] 2025-06-04 06:47:45,923 [wrapper] pandaids: 6678150962
[2025-06-04 02:47:46] 2025-06-04 06:47:46,003 [wrapper] cleanup supervisor_pilot 31812 37055
[2025-06-04 02:47:46] 2025-06-04 06:47:46,007 [wrapper] Test setup, not cleaning
[2025-06-04 02:47:46] 2025-06-04 06:47:46,010 [wrapper] apfmon messages muted
[2025-06-04 02:47:46] 2025-06-04 06:47:46,013 [wrapper] ==== wrapper stdout END ====
[2025-06-04 02:47:46] 2025-06-04 06:47:46,017 [wrapper] ==== wrapper stderr END ====
[2025-06-04 02:47:46]  *** Error codes and diagnostics ***
[2025-06-04 02:47:46]     "exeErrorCode": 0,
[2025-06-04 02:47:46]     "exeErrorDiag": "",
[2025-06-04 02:47:46]     "pilotErrorCode": 0,
[2025-06-04 02:47:46]     "pilotErrorDiag": "",
[2025-06-04 02:47:46]  *** Listing of results directory ***
[2025-06-04 02:47:46] total 390808
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 17:57 pilot3.tar.gz
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 18:27 queuedata.json
[2025-06-04 02:47:46] -rwx------ 1 boincer umatlas     37140 Jun  3 18:27 runpilot2-wrapper.sh
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas       100 Jun  3 23:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 02:47:46] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 23:06 run_atlas
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas       105 Jun  3 23:06 job.xml
[2025-06-04 02:47:46] -rw-r--r-- 2 boincer umatlas 212707717 Jun  3 23:07 EVNT.45006593._001879.pool.root.1
[2025-06-04 02:47:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 23:07 start_atlas.sh
[2025-06-04 02:47:46] drwxrwx--x 2 boincer umatlas      4096 Jun  3 23:07 shared
[2025-06-04 02:47:46] -rw-r--r-- 2 boincer umatlas    508880 Jun  3 23:07 input.tar.gz
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas         0 Jun  3 23:07 boinc_lockfile
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 23:07 pandaJob.out
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas    986077 Jun  3 23:07 agis_schedconf.cvmfs.json
[2025-06-04 02:47:46] drwx------ 4 boincer umatlas      4096 Jun  3 23:07 pilot3
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas      6227 Jun  4 02:40 init_data.xml
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas        95 Jun  4 02:46 pilot_heartbeat.json
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas 180576040 Jun  4 02:46 HITS.45006595._046863.pool.root.1
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas       531 Jun  4 02:46 boinc_task_state.xml
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas      1060 Jun  4 02:47 memory_monitor_summary.json
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas   1603667 Jun  4 02:47 agis_ddmendpoints.agis.ALL.json
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas    408666 Jun  4 02:47 log.45006595._046863.job.log.tgz.1
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas      7753 Jun  4 02:47 heartbeat.json
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas        28 Jun  4 02:47 wrapper_checkpoint.txt
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 02:47 boinc_mmap_file
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas      4353 Jun  4 02:47 pilotlog.txt
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas   1130035 Jun  4 02:47 log.45006595._046863.job.log.1
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas       357 Jun  4 02:47 output.list
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas       620 Jun  4 02:47 runtime_log
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas   1556480 Jun  4 02:47 result.tar.gz
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas       660 Jun  4 02:47 uFMNDmEHpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNLmKDmCruw9n.diag
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas      8657 Jun  4 02:47 runtime_log.err
[2025-06-04 02:47:46] -rw-r--r-- 1 boincer umatlas     20880 Jun  4 02:47 stderr.txt
[2025-06-04 02:47:46] HITS file was successfully produced:
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas 180576040 Jun  4 02:46 shared/HITS.pool.root.1
[2025-06-04 02:47:46]  *** Contents of shared directory: ***
[2025-06-04 02:47:46] total 386108
[2025-06-04 02:47:46] -rw-r--r-- 2 boincer umatlas 212707717 Jun  3 23:07 ATLAS.root_0
[2025-06-04 02:47:46] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 23:07 start_atlas.sh
[2025-06-04 02:47:46] -rw-r--r-- 2 boincer umatlas    508880 Jun  3 23:07 input.tar.gz
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas 180576040 Jun  4 02:46 HITS.pool.root.1
[2025-06-04 02:47:46] -rw------- 1 boincer umatlas   1556480 Jun  4 02:47 result.tar.gz
02:47:48 (33152): run_atlas exited; CPU time 47600.617075
02:47:48 (33152): called boinc_finish(0)

</stderr_txt>
]]>

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