Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
08:45:12 (26560): wrapper (7.7.26015): starting
08:45:12 (26560): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 08:45:12] Arguments: --nthreads 4
[2025-06-04 08:45:12] Threads: 4
[2025-06-04 08:45:12] Checking for CVMFS
[2025-06-04 08:45:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:45:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:45:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:45:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:45:12] 2.9.2.0 2937 56 52468 146771 3 15 29866455 36864001 0 130560 0 61290 99.995 2623 31226 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 08:45:12] CVMFS is ok
[2025-06-04 08:45:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:45:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:45:12] Further information can be found at the LHC@home message board.
[2025-06-04 08:45:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:45:12] Checking for apptainer binary...
[2025-06-04 08:45:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:45:12] Running /usr/bin/apptainer --version
[2025-06-04 08:45:12] apptainer version 1.3.6-6.1
[2025-06-04 08:45:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:45:12] magicA244a
[2025-06-04 08:45:12] apptainer works
[2025-06-04 08:45:12] Set ATHENA_PROC_NUMBER=4
[2025-06-04 08:45:12] Set ATHENA_CORE_NUMBER=4
[2025-06-04 08:45:12] Starting ATLAS job with PandaID=6678150932
[2025-06-04 08:45:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:38:32]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:38:32]  domain=
[2025-06-04 09:38:32]  filesize=241454
[2025-06-04 09:38:32]  filetype=log
[2025-06-04 09:38:32]  guid=638aca23-5e69-44eb-850b-50641c555134
[2025-06-04 09:38:32]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 09:38:32]  is_altstaged=None
[2025-06-04 09:38:32]  is_tar=False
[2025-06-04 09:38:32]  lfn=log.45006595._046833.job.log.tgz.1
[2025-06-04 09:38:32]  mtime=0
[2025-06-04 09:38:32]  protocol_id=None
[2025-06-04 09:38:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:38:32]  replicas=None
[2025-06-04 09:38:32]  scope=mc23_13p6TeV
[2025-06-04 09:38:32]  status=None
[2025-06-04 09:38:32]  status_code=0
[2025-06-04 09:38:32]  storage_token=
[2025-06-04 09:38:32]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678150932/log.45006595._046833.job.log.tgz.1
[2025-06-04 09:38:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/35/log.45006595._046833.job.log.tgz.1
[2025-06-04 09:38:32]  workdir=None
[2025-06-04 09:38:32] ]
[2025-06-04 09:38:32] 2025-06-04 07:38:10,647 | INFO     | transferring file log.45006595._046833.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678150932/log.45006595._046833.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 09:38:32] 2025-06-04 07:38:10,647 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678150932/log.45006595._046833.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0468
[2025-06-04 09:38:32] 2025-06-04 07:38:10,661 | INFO     | adding to output.list: log.45006595._046833.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/35/log.45006595._046833.job.log.tg
[2025-06-04 09:38:32] 2025-06-04 07:38:10,661 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:38:32] 2025-06-04 07:38:10,661 | INFO     | summary of transferred files:
[2025-06-04 09:38:32] 2025-06-04 07:38:10,661 | INFO     |  -- lfn=log.45006595._046833.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:38:32] 2025-06-04 07:38:10,661 | INFO     | stage-out finished correctly
[2025-06-04 09:38:32] 2025-06-04 07:38:10,690 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:38:32] 2025-06-04 07:38:12,830 | INFO     | job 6678150932 has state=finished
[2025-06-04 09:38:32] 2025-06-04 07:38:12,830 | INFO     | preparing for final server update for job 6678150932 in state='finished'
[2025-06-04 09:38:32] 2025-06-04 07:38:12,830 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:38:32] 2025-06-04 07:38:12,830 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:38:32] 2025-06-04 07:38:12,830 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:38:32] 2025-06-04 07:38:12,831 | INFO     | job 6678150932 has finished - writing final server update
[2025-06-04 09:38:32] 2025-06-04 07:38:12,831 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:38:32] 2025-06-04 07:38:12,832 | INFO     | executing command: lscpu
[2025-06-04 09:38:32] 2025-06-04 07:38:12,850 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:38:32] 2025-06-04 07:38:12,960 | INFO     | monitor loop #247: job 0:6678150932 is in state 'finished'
[2025-06-04 09:38:32] 2025-06-04 07:38:12,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:38:32] 2025-06-04 07:38:15,463 | INFO     | monitor loop #248: job 0:6678150932 is in state 'finished'
[2025-06-04 09:38:32] 2025-06-04 07:38:15,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:38:32] 2025-06-04 07:38:16,568 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:38:32] 2025-06-04 07:38:16,568 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678150932/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:38:32] 2025-06-04 07:38:16,569 | INFO     | extracted standard info from prmon json
[2025-06-04 09:38:32] 2025-06-04 07:38:16,569 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:38:32] 2025-06-04 07:38:16,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:38:32] 2025-06-04 07:38:16,569 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:38:32] 2025-06-04 07:38:16,569 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | sum of square deviations: 28242390.0
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | sum of deviations: -4379271130.000001
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | mean x: 1749021186.0
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | mean y: 2570571.533333333
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | -- intersect: 271206175705.8071
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | intersect: 271206175705.8071
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | chi2: 0.02497190431600014
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | -- intersect: 271206175705.8071
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | current memory leak: -155.06 B/s (using 45 data points, chi2=0.02)
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | ..............................
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . Timing measurements:
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . get job = 0 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . initial setup = 1 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . payload setup = 3 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . stage-in = 0 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . payload execution = 3150 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . stage-out = 0 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | . log creation = 0 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,570 | INFO     | ..............................
[2025-06-04 09:38:32] 2025-06-04 07:38:16,601 | INFO     | 
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | job summary report
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | --------------------------------------------------
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | PanDA job id: 6678150932
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | task id: 45006595
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | errors: (none)
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | pilot state: finished 
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | transexitcode: 0
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | exeerrorcode: 0
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | exeerrordiag: 
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | exitcode: 0
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | exitmsg: OK
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | cpuconsumptiontime: 11622 s
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | nevents: 400
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | neventsw: 0
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | pid: 36860
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | pgrp: 36860
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | corecount: 4
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | event service: False
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | sizes: {0: 2405016, 1: 2405215, 3: 2405421, 11: 2405449, 3157: 2430914, 3159: 2440045, 3165: 2440159}
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | --------------------------------------------------
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | 
[2025-06-04 09:38:32] 2025-06-04 07:38:16,602 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 09:38:32] 2025-06-04 07:38:16,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | job 6678150932 has completed (purged errors)
[2025-06-04 09:38:32] 2025-06-04 07:38:16,616 | INFO     | overall cleanup function is called
[2025-06-04 09:38:32] 2025-06-04 07:38:17,623 | INFO     | --- collectZombieJob: --- 10, [36860]
[2025-06-04 09:38:32] 2025-06-04 07:38:17,623 | INFO     | zombie collector waiting for pid 36860
[2025-06-04 09:38:32] 2025-06-04 07:38:17,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:38:32] 2025-06-04 07:38:17,623 | INFO     | collected zombie processes
[2025-06-04 09:38:32] 2025-06-04 07:38:17,623 | INFO     | will attempt to kill all subprocesses of pid=36860
[2025-06-04 09:38:32] 2025-06-04 07:38:17,667 | INFO     | process IDs to be killed: [36860] (in reverse order)
[2025-06-04 09:38:32] 2025-06-04 07:38:17,693 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:38:32] 2025-06-04 07:38:17,693 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:38:32] 2025-06-04 07:38:17,695 | INFO     | did not find any defunct processes belonging to 36860
[2025-06-04 09:38:32] 2025-06-04 07:38:17,696 | INFO     | did not find any defunct processes belonging to 36860
[2025-06-04 09:38:32] 2025-06-04 07:38:17,696 | INFO     | ready for new job
[2025-06-04 09:38:32] 2025-06-04 07:38:17,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:38:32] 2025-06-04 07:38:17,696 | INFO     | **************************************
[2025-06-04 09:38:32] 2025-06-04 07:38:17,696 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:38:32] 2025-06-04 07:38:17,696 | INFO     | **************************************
[2025-06-04 09:38:32] 2025-06-04 07:38:17,696 | INFO     | 
[2025-06-04 09:38:32] 2025-06-04 07:38:17,697 | INFO     | architecture information:
[2025-06-04 09:38:32] 2025-06-04 07:38:17,697 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:38:32] 2025-06-04 07:38:17,707 | INFO     | cat /etc/os-release:
[2025-06-04 09:38:32] NAME="CentOS Linux"
[2025-06-04 09:38:32] VERSION="7 (Core)"
[2025-06-04 09:38:32] ID="centos"
[2025-06-04 09:38:32] ID_LIKE="rhel fedora"
[2025-06-04 09:38:32] VERSION_ID="7"
[2025-06-04 09:38:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:38:32] ANSI_COLOR="0;31"
[2025-06-04 09:38:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:38:32] HOME_URL="https://www.centos.org/"
[2025-06-04 09:38:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:38:32] 
[2025-06-04 09:38:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:38:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:38:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:38:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:38:32] 
[2025-06-04 09:38:32] 2025-06-04 07:38:17,707 | INFO     | **************************************
[2025-06-04 09:38:32] 2025-06-04 07:38:18,210 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 09:38:32] 2025-06-04 07:38:18,223 | INFO     | sufficient remaining disk space (326496157696 B)
[2025-06-04 09:38:32] 2025-06-04 07:38:18,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:38:32] 2025-06-04 07:38:18,224 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:38:32] 2025-06-04 07:38:18,224 | INFO     | update_server=False
[2025-06-04 09:38:32] 2025-06-04 07:38:18,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:38:32] 2025-06-04 07:38:18,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:38:32] 2025-06-04 07:38:18,337 | INFO     | all job control threads have been joined
[2025-06-04 09:38:32] 2025-06-04 07:38:18,566 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:38:32] 2025-06-04 07:38:18,566 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:38:32] 2025-06-04 07:38:18,566 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:38:32] 2025-06-04 07:38:18,594 | INFO     | all payload control threads have been joined
[2025-06-04 09:38:32] 2025-06-04 07:38:18,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:38:32] 2025-06-04 07:38:18,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:38:32] 2025-06-04 07:38:18,973 | INFO     | aborting loop
[2025-06-04 09:38:32] 2025-06-04 07:38:19,187 | INFO     | all data control threads have been joined
[2025-06-04 09:38:32] 2025-06-04 07:38:19,230 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:19,230 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:19,343 | INFO     | [job] control thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:19,370 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:19,521 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:19,568 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:19,599 | INFO     | [payload] control thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:19,979 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:20,106 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:20,193 | INFO     | [data] control thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:20,346 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:20,567 | INFO     | [job] validate thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:20,650 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:20,709 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:20,719 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:21,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:38:32] 2025-06-04 07:38:25,236 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:38:32] 2025-06-04 07:38:27,139 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140189880395584)>', '<ExcThread(monitor, started 140188932105984)>']
[2025-06-04 09:38:32] 2025-06-04 07:38:27,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:38:32] 2025-06-04 07:38:27,607 | INFO     | [monitor] control thread has ended
[2025-06-04 09:38:32] 2025-06-04 07:38:32,165 | INFO     | all workflow threads have been joined
[2025-06-04 09:38:32] 2025-06-04 07:38:32,166 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:38:32] 2025-06-04 07:38:32,166 | INFO     | traces error code: 0
[2025-06-04 09:38:32] 2025-06-04 07:38:32,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:38:32] 2025-06-04 07:38:32,218 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:38:32] 2025-06-04 07:38:32,221 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:38:32] 2025-06-04 07:38:32,223 [wrapper] pilotpid: 30256
[2025-06-04 09:38:32] 2025-06-04 07:38:32,226 [wrapper] Pilot exit status: 0
[2025-06-04 09:38:32] 2025-06-04 07:38:32,234 [wrapper] pandaids: 6678150932
[2025-06-04 09:38:32] 2025-06-04 07:38:32,251 [wrapper] cleanup supervisor_pilot   46658 30257
[2025-06-04 09:38:32] 2025-06-04 07:38:32,254 [wrapper] Test setup, not cleaning
[2025-06-04 09:38:32] 2025-06-04 07:38:32,256 [wrapper] apfmon messages muted
[2025-06-04 09:38:32] 2025-06-04 07:38:32,259 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:38:32] 2025-06-04 07:38:32,262 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:38:32]  *** Error codes and diagnostics ***
[2025-06-04 09:38:32]     "exeErrorCode": 0,
[2025-06-04 09:38:32]     "exeErrorDiag": "",
[2025-06-04 09:38:32]     "pilotErrorCode": 0,
[2025-06-04 09:38:32]     "pilotErrorDiag": "",
[2025-06-04 09:38:32]  *** Listing of results directory ***
[2025-06-04 09:38:32] total 379252
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:57 pilot3.tar.gz
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc      5111 Jun  4 00:23 queuedata.json
[2025-06-04 09:38:32] -rwx------ 1 boinc boinc     37140 Jun  4 00:25 runpilot2-wrapper.sh
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc       100 Jun  4 08:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:38:32] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 08:45 run_atlas
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc       105 Jun  4 08:45 job.xml
[2025-06-04 09:38:32] -rw-r--r-- 2 boinc boinc 216700930 Jun  4 08:45 EVNT.45006593._001877.pool.root.1
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc      6756 Jun  4 08:45 init_data.xml
[2025-06-04 09:38:32] drwxrwx--x 2 boinc boinc      4096 Jun  4 08:45 shared
[2025-06-04 09:38:32] -rw-r--r-- 2 boinc boinc    508877 Jun  4 08:45 input.tar.gz
[2025-06-04 09:38:32] -rw-r--r-- 2 boinc boinc     15093 Jun  4 08:45 start_atlas.sh
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc         0 Jun  4 08:45 boinc_lockfile
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc      2525 Jun  4 08:45 pandaJob.out
[2025-06-04 09:38:32] -rw------- 1 boinc boinc    986745 Jun  4 08:45 agis_schedconf.cvmfs.json
[2025-06-04 09:38:32] -rw------- 1 boinc boinc   1603667 Jun  4 08:45 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:38:32] drwx------ 4 boinc boinc      4096 Jun  4 08:45 pilot3
[2025-06-04 09:38:32] -rw------- 1 boinc boinc        95 Jun  4 09:37 pilot_heartbeat.json
[2025-06-04 09:38:32] -rw------- 1 boinc boinc 166683149 Jun  4 09:37 HITS.45006595._046833.pool.root.1
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc       529 Jun  4 09:38 boinc_task_state.xml
[2025-06-04 09:38:32] -rw------- 1 boinc boinc      1013 Jun  4 09:38 memory_monitor_summary.json
[2025-06-04 09:38:32] -rw------- 1 boinc boinc    241454 Jun  4 09:38 log.45006595._046833.job.log.tgz.1
[2025-06-04 09:38:32] -rw------- 1 boinc boinc      7655 Jun  4 09:38 heartbeat.json
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc      8192 Jun  4 09:38 boinc_mmap_file
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc        27 Jun  4 09:38 wrapper_checkpoint.txt
[2025-06-04 09:38:32] -rw------- 1 boinc boinc      4357 Jun  4 09:38 pilotlog.txt
[2025-06-04 09:38:32] -rw------- 1 boinc boinc    326033 Jun  4 09:38 log.45006595._046833.job.log.1
[2025-06-04 09:38:32] -rw------- 1 boinc boinc       357 Jun  4 09:38 output.list
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc       620 Jun  4 09:38 runtime_log
[2025-06-04 09:38:32] -rw------- 1 boinc boinc    583680 Jun  4 09:38 result.tar.gz
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc      8753 Jun  4 09:38 runtime_log.err
[2025-06-04 09:38:32] -rw------- 1 boinc boinc       661 Jun  4 09:38 aWfLDmHFpg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtKmKDmAgJ4To.diag
[2025-06-04 09:38:32] -rw-r--r-- 1 boinc boinc     20989 Jun  4 09:38 stderr.txt
[2025-06-04 09:38:32] HITS file was successfully produced:
[2025-06-04 09:38:32] -rw------- 1 boinc boinc 166683149 Jun  4 09:37 shared/HITS.pool.root.1
[2025-06-04 09:38:32]  *** Contents of shared directory: ***
[2025-06-04 09:38:32] total 375500
[2025-06-04 09:38:32] -rw-r--r-- 2 boinc boinc 216700930 Jun  4 08:45 ATLAS.root_0
[2025-06-04 09:38:32] -rw-r--r-- 2 boinc boinc    508877 Jun  4 08:45 input.tar.gz
[2025-06-04 09:38:32] -rw-r--r-- 2 boinc boinc     15093 Jun  4 08:45 start_atlas.sh
[2025-06-04 09:38:32] -rw------- 1 boinc boinc 166683149 Jun  4 09:37 HITS.pool.root.1
[2025-06-04 09:38:32] -rw------- 1 boinc boinc    583680 Jun  4 09:38 result.tar.gz
09:38:34 (26560): run_atlas exited; CPU time 11631.803019
09:38:34 (26560): called boinc_finish(0)

</stderr_txt>
]]>

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