Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:55:37 (4115397): wrapper (7.7.26015): starting
22:55:37 (4115397): wrapper: running run_atlas (--nthreads 10)
[2025-06-03 22:55:37] Arguments: --nthreads 10
[2025-06-03 22:55:37] Threads: 10
[2025-06-03 22:55:37] Checking for CVMFS
[2025-06-03 22:55:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:55:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:55:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:55:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:55:37] 2.12.6.0 6643 764 116792 146765 0 138 23872495 32935936 24613 16776704 0 6960067 99.813 2157303 20321 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 22:55:37] CVMFS is ok
[2025-06-03 22:55:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:55:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:55:37] Further information can be found at the LHC@home message board.
[2025-06-03 22:55:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:55:37] Checking for apptainer binary...
[2025-06-03 22:55:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:55:37] Running /usr/bin/apptainer --version
[2025-06-03 22:55:37] apptainer version 1.4.1-1.el9
[2025-06-03 22:55:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:55:37] c-3-40.aglt2.org
[2025-06-03 22:55:37] apptainer works
[2025-06-03 22:55:38] Set ATHENA_PROC_NUMBER=10
[2025-06-03 22:55:38] Set ATHENA_CORE_NUMBER=10
[2025-06-03 22:55:38] Starting ATLAS job with PandaID=6678214543
[2025-06-03 22:55:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 02:01:09]  *** The last 200 lines of the pilot log: ***
[2025-06-04 02:01:09] 2025-06-04 06:00:53,930 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678214543/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 02:01:09] 2025-06-04 06:00:53,931 | INFO     | extracted standard info from prmon json
[2025-06-04 02:01:09] 2025-06-04 06:00:53,931 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 02:01:09] 2025-06-04 06:00:53,931 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 02:01:09] 2025-06-04 06:00:53,931 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 02:01:09] 2025-06-04 06:00:53,932 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 02:01:09] 2025-06-04 06:00:53,935 | INFO     | fitting pss+swap vs Time
[2025-06-04 02:01:09] 2025-06-04 06:00:53,935 | INFO     | sum of square deviations: 1869154220.9945
[2025-06-04 02:01:09] 2025-06-04 06:00:53,936 | INFO     | sum of deviations: 31940952867.84067
[2025-06-04 02:01:09] 2025-06-04 06:00:53,936 | INFO     | mean x: 1749011296.8516483
[2025-06-04 02:01:09] 2025-06-04 06:00:53,936 | INFO     | mean y: 2174463.6978021977
[2025-06-04 02:01:09] 2025-06-04 06:00:53,937 | INFO     | -- intersect: -29885721767.965668
[2025-06-04 02:01:09] 2025-06-04 06:00:53,937 | INFO     | intersect: -29885721767.965668
[2025-06-04 02:01:09] 2025-06-04 06:00:53,937 | INFO     | chi2: 3.647236039030959
[2025-06-04 02:01:09] 2025-06-04 06:00:53,937 | INFO     | sum of square deviations: 1719301162.8587508
[2025-06-04 02:01:09] 2025-06-04 06:00:53,938 | INFO     | sum of deviations: 40099841895.58758
[2025-06-04 02:01:09] 2025-06-04 06:00:53,938 | INFO     | mean x: 1749011144.3615818
[2025-06-04 02:01:09] 2025-06-04 06:00:53,938 | INFO     | mean y: 2182524.6158192093
[2025-06-04 02:01:09] 2025-06-04 06:00:53,939 | INFO     | -- intersect: -40790595307.223564
[2025-06-04 02:01:09] 2025-06-04 06:00:53,939 | INFO     | intersect: -40790595307.223564
[2025-06-04 02:01:09] 2025-06-04 06:00:53,939 | INFO     | chi2: 2.9861603691001712
[2025-06-04 02:01:09] 2025-06-04 06:00:53,939 | INFO     | current chi2=2.9861603691001712 (change=18.12538763206645 %)
[2025-06-04 02:01:09] 2025-06-04 06:00:53,939 | INFO     | right removable region: 176
[2025-06-04 02:01:09] 2025-06-04 06:00:53,939 | INFO     | sum of square deviations: 1719262122.8587508
[2025-06-04 02:01:09] 2025-06-04 06:00:53,940 | INFO     | sum of deviations: -4471085739.005649
[2025-06-04 02:01:09] 2025-06-04 06:00:53,940 | INFO     | mean x: 1749011449.3615818
[2025-06-04 02:01:09] 2025-06-04 06:00:53,940 | INFO     | mean y: 2211371.734463277
[2025-06-04 02:01:09] 2025-06-04 06:00:53,940 | INFO     | -- intersect: 4550662736.204286
[2025-06-04 02:01:09] 2025-06-04 06:00:53,940 | INFO     | intersect: 4550662736.204286
[2025-06-04 02:01:09] 2025-06-04 06:00:53,941 | INFO     | chi2: 1.486162495455865
[2025-06-04 02:01:09] 2025-06-04 06:00:53,941 | INFO     | current chi2=1.486162495455865 (change=59.25236317168202 %)
[2025-06-04 02:01:09] 2025-06-04 06:00:53,941 | INFO     | sum of square deviations: 1577602737.186043
[2025-06-04 02:01:09] 2025-06-04 06:00:53,942 | INFO     | sum of deviations: -20031919745.372093
[2025-06-04 02:01:09] 2025-06-04 06:00:53,942 | INFO     | mean x: 1749011601.872093
[2025-06-04 02:01:09] 2025-06-04 06:00:53,942 | INFO     | mean y: 2227992.7558139535
[2025-06-04 02:01:09] 2025-06-04 06:00:53,942 | INFO     | -- intersect: 22210645369.69317
[2025-06-04 02:01:09] 2025-06-04 06:00:53,942 | INFO     | intersect: 22210645369.69317
[2025-06-04 02:01:09] 2025-06-04 06:00:53,943 | INFO     | chi2: 1.00885791224021
[2025-06-04 02:01:09] 2025-06-04 06:00:53,943 | INFO     | current chi2=1.00885791224021 (change=32.11658110570519 %)
[2025-06-04 02:01:09] 2025-06-04 06:00:53,943 | INFO     | sum of square deviations: 1443943501.4730587
[2025-06-04 02:01:09] 2025-06-04 06:00:53,944 | INFO     | sum of deviations: -12522082003.508978
[2025-06-04 02:01:09] 2025-06-04 06:00:53,944 | INFO     | mean x: 1749011754.3832335
[2025-06-04 02:01:09] 2025-06-04 06:00:53,944 | INFO     | mean y: 2219354.4610778443
[2025-06-04 02:01:09] 2025-06-04 06:00:53,944 | INFO     | -- intersect: 15169896338.46016
[2025-06-04 02:01:09] 2025-06-04 06:00:53,944 | INFO     | intersect: 15169896338.46016
[2025-06-04 02:01:09] 2025-06-04 06:00:53,944 | INFO     | chi2: 0.9157439251773445
[2025-06-04 02:01:09] 2025-06-04 06:00:53,945 | INFO     | current chi2=0.9157439251773445 (change=9.22964333561126 %)
[2025-06-04 02:01:09] 2025-06-04 06:00:53,945 | INFO     | left removable region: 30
[2025-06-04 02:01:09] 2025-06-04 06:00:53,945 | INFO     | sum of square deviations: 964857691.9794506
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | sum of deviations: 3673326642.609588
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | mean x: 1749012028.8561645
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | mean y: 2219071.2671232875
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | -- intersect: -6656475301.227791
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | intersect: -6656475301.227791
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | chi2: 0.051408946270522775
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | -- intersect: -6656475301.227791
[2025-06-04 02:01:09] 2025-06-04 06:00:53,946 | INFO     | current memory leak: 3.81 B/s (using 146 data points, chi2=0.05)
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | ..............................
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . Timing measurements:
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . get job = 0 s
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . initial setup = 2 s
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . payload setup = 7 s
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . stage-in = 0 s
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . payload execution = 11065 s
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . stage-out = 2 s
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | . log creation = 0 s
[2025-06-04 02:01:09] 2025-06-04 06:00:53,947 | INFO     | ..............................
[2025-06-04 02:01:09] 2025-06-04 06:00:54,036 | INFO     | 
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | job summary report
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | --------------------------------------------------
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | PanDA job id: 6678214543
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | task id: 45006595
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | errors: (none)
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | pilot state: finished 
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | transexitcode: 0
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | exeerrorcode: 0
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | exeerrordiag: 
[2025-06-04 02:01:09] 2025-06-04 06:00:54,037 | INFO     | exitcode: 0
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | exitmsg: OK
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | cpuconsumptiontime: 37026 s
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | nevents: 400
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | neventsw: 0
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | pid: 4127662
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | pgrp: 4127662
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | corecount: 10
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | event service: False
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | sizes: {0: 2404957, 1: 2405212, 6: 2405418, 12: 2405446, 11076: 2434243, 11079: 2443184, 11083: 2443368, 11089: 2443538}
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | --------------------------------------------------
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | 
[2025-06-04 02:01:09] 2025-06-04 06:00:54,038 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 02:01:09] 2025-06-04 06:00:54,058 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 02:01:09] 2025-06-04 06:00:54,059 | INFO     | job 6678214543 has completed (purged errors)
[2025-06-04 02:01:09] 2025-06-04 06:00:54,060 | INFO     | overall cleanup function is called
[2025-06-04 02:01:09] 2025-06-04 06:00:55,067 | INFO     | --- collectZombieJob: --- 10, [4127662]
[2025-06-04 02:01:09] 2025-06-04 06:00:55,067 | INFO     | zombie collector waiting for pid 4127662
[2025-06-04 02:01:09] 2025-06-04 06:00:55,067 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 02:01:09] 2025-06-04 06:00:55,067 | INFO     | collected zombie processes
[2025-06-04 02:01:09] 2025-06-04 06:00:55,067 | INFO     | will attempt to kill all subprocesses of pid=4127662
[2025-06-04 02:01:09] 2025-06-04 06:00:55,498 | INFO     | process IDs to be killed: [4127662] (in reverse order)
[2025-06-04 02:01:09] 2025-06-04 06:00:55,612 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 02:01:09] 2025-06-04 06:00:55,612 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 02:01:09] 2025-06-04 06:00:55,630 | INFO     | did not find any defunct processes belonging to 4127662
[2025-06-04 02:01:09] 2025-06-04 06:00:55,647 | INFO     | did not find any defunct processes belonging to 4127662
[2025-06-04 02:01:09] 2025-06-04 06:00:55,647 | INFO     | ready for new job
[2025-06-04 02:01:09] 2025-06-04 06:00:55,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 02:01:09] 2025-06-04 06:00:55,649 | INFO     | **************************************
[2025-06-04 02:01:09] 2025-06-04 06:00:55,649 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 02:01:09] 2025-06-04 06:00:55,650 | INFO     | **************************************
[2025-06-04 02:01:09] 2025-06-04 06:00:55,650 | INFO     | 
[2025-06-04 02:01:09] 2025-06-04 06:00:55,670 | INFO     | architecture information:
[2025-06-04 02:01:09] 2025-06-04 06:00:55,670 | INFO     | executing command: cat /etc/os-release
[2025-06-04 02:01:09] 2025-06-04 06:00:55,687 | INFO     | cat /etc/os-release:
[2025-06-04 02:01:09] NAME="CentOS Linux"
[2025-06-04 02:01:09] VERSION="7 (Core)"
[2025-06-04 02:01:09] ID="centos"
[2025-06-04 02:01:09] ID_LIKE="rhel fedora"
[2025-06-04 02:01:09] VERSION_ID="7"
[2025-06-04 02:01:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 02:01:09] ANSI_COLOR="0;31"
[2025-06-04 02:01:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 02:01:09] HOME_URL="https://www.centos.org/"
[2025-06-04 02:01:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 02:01:09] 
[2025-06-04 02:01:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 02:01:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 02:01:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 02:01:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 02:01:09] 
[2025-06-04 02:01:09] 2025-06-04 06:00:55,688 | INFO     | **************************************
[2025-06-04 02:01:09] 2025-06-04 06:00:56,190 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 02:01:09] 2025-06-04 06:00:56,209 | INFO     | sufficient remaining disk space (75972476928 B)
[2025-06-04 02:01:09] 2025-06-04 06:00:56,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 02:01:09] 2025-06-04 06:00:56,210 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 02:01:09] 2025-06-04 06:00:56,210 | INFO     | update_server=False
[2025-06-04 02:01:09] 2025-06-04 06:00:56,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 02:01:09] 2025-06-04 06:00:56,210 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 02:01:09] 2025-06-04 06:00:56,211 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 02:01:09] 2025-06-04 06:00:56,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 02:01:09] 2025-06-04 06:00:56,211 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 02:01:09] 2025-06-04 06:00:56,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:01:09] 2025-06-04 06:00:56,212 | INFO     | aborting loop
[2025-06-04 02:01:09] 2025-06-04 06:00:56,837 | INFO     | all data control threads have been joined
[2025-06-04 02:01:09] 2025-06-04 06:00:56,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 02:01:09] 2025-06-04 06:00:57,201 | INFO     | all job control threads have been joined
[2025-06-04 02:01:09] 2025-06-04 06:00:57,215 | INFO     | [job] retrieve thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:57,217 | INFO     | [job] job monitor thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:57,689 | INFO     | [payload] failed_post thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:57,696 | INFO     | all payload control threads have been joined
[2025-06-04 02:01:09] 2025-06-04 06:00:57,843 | INFO     | [data] control thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,060 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 02:01:09] 2025-06-04 06:00:58,067 | INFO     | [payload] validate_post thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,101 | INFO     | [data] copytool_in thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,206 | INFO     | [job] control thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,272 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,357 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,471 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,562 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,572 | INFO     | [job] validate thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,704 | INFO     | [payload] control thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:58,993 | INFO     | [data] copytool_out thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:00:59,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 02:01:09] 2025-06-04 06:01:00,052 | INFO     | [job] queue monitor thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:01:02,065 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 02:01:09] 2025-06-04 06:01:04,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139630613346112)>', '<ExcThread(monitor, started 139629965592320)>']
[2025-06-04 02:01:09] 2025-06-04 06:01:04,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 02:01:09] 2025-06-04 06:01:04,253 | INFO     | [monitor] control thread has ended
[2025-06-04 02:01:09] 2025-06-04 06:01:09,110 | INFO     | all workflow threads have been joined
[2025-06-04 02:01:09] 2025-06-04 06:01:09,111 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 02:01:09] 2025-06-04 06:01:09,111 | INFO     | traces error code: 0
[2025-06-04 02:01:09] 2025-06-04 06:01:09,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 02:01:09] 2025-06-04 06:01:09,317 [wrapper] ==== pilot stdout END ====
[2025-06-04 02:01:09] 2025-06-04 06:01:09,320 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 02:01:09] 2025-06-04 06:01:09,323 [wrapper] pilotpid: 4121170
[2025-06-04 02:01:09] 2025-06-04 06:01:09,326 [wrapper] Pilot exit status: 0
[2025-06-04 02:01:09] 2025-06-04 06:01:09,338 [wrapper] pandaids: 6678214543
[2025-06-04 02:01:09] 2025-06-04 06:01:09,431 [wrapper] cleanup supervisor_pilot  732431 4121171
[2025-06-04 02:01:09] 2025-06-04 06:01:09,435 [wrapper] Test setup, not cleaning
[2025-06-04 02:01:09] 2025-06-04 06:01:09,438 [wrapper] apfmon messages muted
[2025-06-04 02:01:09] 2025-06-04 06:01:09,442 [wrapper] ==== wrapper stdout END ====
[2025-06-04 02:01:09] 2025-06-04 06:01:09,445 [wrapper] ==== wrapper stderr END ====
[2025-06-04 02:01:09]  *** Error codes and diagnostics ***
[2025-06-04 02:01:09]     "exeErrorCode": 0,
[2025-06-04 02:01:09]     "exeErrorDiag": "",
[2025-06-04 02:01:09]     "pilotErrorCode": 0,
[2025-06-04 02:01:09]     "pilotErrorDiag": "",
[2025-06-04 02:01:09]  *** Listing of results directory ***
[2025-06-04 02:01:09] total 394288
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 19:58 pilot3.tar.gz
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 20:40 queuedata.json
[2025-06-04 02:01:09] -rwx------. 1 boincer umatlas     37140 Jun  3 20:40 runpilot2-wrapper.sh
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas       100 Jun  3 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 02:01:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 22:55 run_atlas
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas       105 Jun  3 22:55 job.xml
[2025-06-04 02:01:09] -rw-r--r--. 2 boincer umatlas 216778664 Jun  3 22:55 EVNT.45006593._001968.pool.root.1
[2025-06-04 02:01:09] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:55 start_atlas.sh
[2025-06-04 02:01:09] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 22:55 shared
[2025-06-04 02:01:09] -rw-r--r--. 2 boincer umatlas    508878 Jun  3 22:55 input.tar.gz
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas         0 Jun  3 22:55 boinc_lockfile
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 22:55 pandaJob.out
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas    986077 Jun  3 22:55 agis_schedconf.cvmfs.json
[2025-06-04 02:01:09] drwx------. 4 boincer umatlas      4096 Jun  3 22:55 pilot3
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas 180477299 Jun  4 02:00 HITS.45006595._049058.pool.root.1
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas       530 Jun  4 02:00 boinc_task_state.xml
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas      6841 Jun  4 02:00 init_data.xml
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas      1041 Jun  4 02:00 memory_monitor_summary.json
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas        95 Jun  4 02:00 pilot_heartbeat.json
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas   1603667 Jun  4 02:00 agis_ddmendpoints.agis.ALL.json
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas    381120 Jun  4 02:00 log.45006595._049058.job.log.tgz.1
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas      7715 Jun  4 02:00 heartbeat.json
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 02:01 boinc_mmap_file
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas        28 Jun  4 02:01 wrapper_checkpoint.txt
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas      4476 Jun  4 02:01 pilotlog.txt
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas    947063 Jun  4 02:01 log.45006595._049058.job.log.1
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas       357 Jun  4 02:01 output.list
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas       620 Jun  4 02:01 runtime_log
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas   1351680 Jun  4 02:01 result.tar.gz
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas      8652 Jun  4 02:01 runtime_log.err
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas       654 Jun  4 02:01 5DfKDmZMrg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZemKDmHFkKRo.diag
[2025-06-04 02:01:09] -rw-r--r--. 1 boincer umatlas     20941 Jun  4 02:01 stderr.txt
[2025-06-04 02:01:09] HITS file was successfully produced:
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas 180477299 Jun  4 02:00 shared/HITS.pool.root.1
[2025-06-04 02:01:09]  *** Contents of shared directory: ***
[2025-06-04 02:01:09] total 389788
[2025-06-04 02:01:09] -rw-r--r--. 2 boincer umatlas 216778664 Jun  3 22:55 ATLAS.root_0
[2025-06-04 02:01:09] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:55 start_atlas.sh
[2025-06-04 02:01:09] -rw-r--r--. 2 boincer umatlas    508878 Jun  3 22:55 input.tar.gz
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas 180477299 Jun  4 02:00 HITS.pool.root.1
[2025-06-04 02:01:09] -rw-------. 1 boincer umatlas   1351680 Jun  4 02:01 result.tar.gz
02:01:10 (4115397): run_atlas exited; CPU time 37489.644471
02:01:10 (4115397): called boinc_finish(0)

</stderr_txt>
]]>

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