Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:41:14 (943650): wrapper (7.7.26015): starting
09:41:14 (943650): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:41:14] Arguments: --nthreads 8
[2025-06-04 09:41:14] Threads: 8
[2025-06-04 09:41:14] Checking for CVMFS
[2025-06-04 09:41:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:41:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:41:14] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:41:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:41:14] 2.13.0.0 42761 2182 73500 146772 0 56 3730042 4097024 0 130560 0 1650424 99.994 308614 50792 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-06-04 09:41:14] CVMFS is ok
[2025-06-04 09:41:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:41:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:41:14] Further information can be found at the LHC@home message board.
[2025-06-04 09:41:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:41:14] Checking for apptainer binary...
[2025-06-04 09:41:14] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-06-04 09:41:14] apptainer is not installed, using version from CVMFS
[2025-06-04 09:41:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:41:14] pckeatlas02
[2025-06-04 09:41:14] apptainer works
[2025-06-04 09:41:14] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:41:14] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:41:14] Starting ATLAS job with PandaID=6678149998
[2025-06-04 09:41:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:50:04]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:50:04]  is_altstaged=None
[2025-06-04 10:50:04]  is_tar=False
[2025-06-04 10:50:04]  lfn=log.45006595._046497.job.log.tgz.1
[2025-06-04 10:50:04]  mtime=0
[2025-06-04 10:50:04]  protocol_id=None
[2025-06-04 10:50:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:50:04]  replicas=None
[2025-06-04 10:50:04]  scope=mc23_13p6TeV
[2025-06-04 10:50:04]  status=None
[2025-06-04 10:50:04]  status_code=0
[2025-06-04 10:50:04]  storage_token=
[2025-06-04 10:50:04]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-6678149998/log.45006595._046497.job.log.tgz.1
[2025-06-04 10:50:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/43/log.45006595._046497.job.log.tgz.1
[2025-06-04 10:50:04]  workdir=None
[2025-06-04 10:50:04] ]
[2025-06-04 10:50:04] 2025-06-04 08:49:40,848 | INFO     | transferring file log.45006595._046497.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-6678149998/log.45006595._046497.job.log.tgz.1 to /var/lib/boinc/slots
[2025-06-04 10:50:04] 2025-06-04 08:49:40,848 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-6678149998/log.45006595._046497.job.log.tgz.1 /var/lib/boinc/slots/19/log.45006595._046497.j
[2025-06-04 10:50:04] 2025-06-04 08:49:40,855 | INFO     | adding to output.list: log.45006595._046497.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ef/43/log.45006595._046497.job.log.tg
[2025-06-04 10:50:04] 2025-06-04 08:49:40,855 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:50:04] 2025-06-04 08:49:40,856 | INFO     | summary of transferred files:
[2025-06-04 10:50:04] 2025-06-04 08:49:40,856 | INFO     |  -- lfn=log.45006595._046497.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:50:04] 2025-06-04 08:49:40,856 | INFO     | stage-out finished correctly
[2025-06-04 10:50:04] 2025-06-04 08:49:42,279 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:50:04] 2025-06-04 08:49:42,314 | INFO     | job 6678149998 has state=finished
[2025-06-04 10:50:04] 2025-06-04 08:49:42,314 | INFO     | preparing for final server update for job 6678149998 in state='finished'
[2025-06-04 10:50:04] 2025-06-04 08:49:42,315 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:50:04] 2025-06-04 08:49:42,315 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:50:04] 2025-06-04 08:49:42,315 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:50:04] 2025-06-04 08:49:42,315 | INFO     | job 6678149998 has finished - writing final server update
[2025-06-04 10:50:04] 2025-06-04 08:49:42,315 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:50:04] 2025-06-04 08:49:42,316 | INFO     | executing command: lscpu
[2025-06-04 10:50:04] 2025-06-04 08:49:42,324 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:50:04] 2025-06-04 08:49:44,154 | WARNING  | process 954453 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 10:50:04] 2025-06-04 08:49:44,154 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6678149998/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:50:04] 2025-06-04 08:49:44,190 | INFO     | number of running child processes to parent process 954453: 1
[2025-06-04 10:50:04] 2025-06-04 08:49:44,190 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:50:04] 2025-06-04 08:49:44,636 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:50:04] 2025-06-04 08:49:44,636 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6678149998/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:50:04] 2025-06-04 08:49:44,636 | INFO     | extracted standard info from prmon json
[2025-06-04 10:50:04] 2025-06-04 08:49:44,636 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:50:04] 2025-06-04 08:49:44,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:50:04] 2025-06-04 08:49:44,636 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:50:04] 2025-06-04 08:49:44,636 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:50:04] 2025-06-04 08:49:44,637 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:50:04] 2025-06-04 08:49:44,637 | INFO     | sum of square deviations: 66959395.0
[2025-06-04 10:50:04] 2025-06-04 08:49:44,637 | INFO     | sum of deviations: -10932574391.0
[2025-06-04 10:50:04] 2025-06-04 08:49:44,637 | INFO     | mean x: 1749025000.5
[2025-06-04 10:50:04] 2025-06-04 08:49:44,637 | INFO     | mean y: 2800703.466666667
[2025-06-04 10:50:04] 2025-06-04 08:49:44,637 | INFO     | -- intersect: 285569089492.1432
[2025-06-04 10:50:04] 2025-06-04 08:49:44,637 | INFO     | intersect: 285569089492.1432
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | chi2: 0.09961708026245737
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | -- intersect: 285569089492.1432
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | current memory leak: -163.27 B/s (using 60 data points, chi2=0.10)
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | ..............................
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . Timing measurements:
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . get job = 0 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . initial setup = 0 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . payload setup = 2 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . stage-in = 0 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . payload execution = 4082 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . stage-out = 0 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | . log creation = 0 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,638 | INFO     | ..............................
[2025-06-04 10:50:04] 2025-06-04 08:49:44,675 | INFO     | 
[2025-06-04 10:50:04] 2025-06-04 08:49:44,675 | INFO     | job summary report
[2025-06-04 10:50:04] 2025-06-04 08:49:44,675 | INFO     | --------------------------------------------------
[2025-06-04 10:50:04] 2025-06-04 08:49:44,675 | INFO     | PanDA job id: 6678149998
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | task id: 45006595
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | errors: (none)
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | pilot state: finished 
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | transexitcode: 0
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | exeerrorcode: 0
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | exeerrordiag: 
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | exitcode: 0
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | exitmsg: OK
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | cpuconsumptiontime: 31019 s
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | nevents: 400
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | neventsw: 0
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | pid: 954453
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | pgrp: 954453
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | corecount: 8
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | event service: False
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | sizes: {0: 2405129, 2: 2405335, 11: 2405363, 4089: 2431192, 4090: 2440135, 4092: 2440191, 4094: 2440489}
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | --------------------------------------------------
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | 
[2025-06-04 10:50:04] 2025-06-04 08:49:44,676 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-04 10:50:04] 2025-06-04 08:49:44,684 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | job 6678149998 has completed (purged errors)
[2025-06-04 10:50:04] 2025-06-04 08:49:44,685 | INFO     | overall cleanup function is called
[2025-06-04 10:50:04] 2025-06-04 08:49:45,177 | INFO     | 4107s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 10:50:04] 2025-06-04 08:49:45,691 | INFO     | --- collectZombieJob: --- 10, [954453]
[2025-06-04 10:50:04] 2025-06-04 08:49:45,692 | INFO     | zombie collector waiting for pid 954453
[2025-06-04 10:50:04] 2025-06-04 08:49:45,692 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:50:04] 2025-06-04 08:49:45,692 | INFO     | collected zombie processes
[2025-06-04 10:50:04] 2025-06-04 08:49:45,692 | INFO     | will attempt to kill all subprocesses of pid=954453
[2025-06-04 10:50:04] 2025-06-04 08:49:45,723 | INFO     | process IDs to be killed: [954453] (in reverse order)
[2025-06-04 10:50:04] 2025-06-04 08:49:45,739 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:50:04] 2025-06-04 08:49:45,739 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:50:04] 2025-06-04 08:49:45,740 | INFO     | did not find any defunct processes belonging to 954453
[2025-06-04 10:50:04] 2025-06-04 08:49:45,741 | INFO     | did not find any defunct processes belonging to 954453
[2025-06-04 10:50:04] 2025-06-04 08:49:45,741 | INFO     | ready for new job
[2025-06-04 10:50:04] 2025-06-04 08:49:45,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:50:04] 2025-06-04 08:49:45,742 | INFO     | **************************************
[2025-06-04 10:50:04] 2025-06-04 08:49:45,742 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:50:04] 2025-06-04 08:49:45,742 | INFO     | **************************************
[2025-06-04 10:50:04] 2025-06-04 08:49:45,742 | INFO     | 
[2025-06-04 10:50:04] 2025-06-04 08:49:45,742 | INFO     | architecture information:
[2025-06-04 10:50:04] 2025-06-04 08:49:45,743 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:50:04] 2025-06-04 08:49:45,748 | INFO     | cat /etc/os-release:
[2025-06-04 10:50:04] NAME="CentOS Linux"
[2025-06-04 10:50:04] VERSION="7 (Core)"
[2025-06-04 10:50:04] ID="centos"
[2025-06-04 10:50:04] ID_LIKE="rhel fedora"
[2025-06-04 10:50:04] VERSION_ID="7"
[2025-06-04 10:50:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:50:04] ANSI_COLOR="0;31"
[2025-06-04 10:50:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:50:04] HOME_URL="https://www.centos.org/"
[2025-06-04 10:50:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:50:04] 
[2025-06-04 10:50:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:50:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:50:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:50:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:50:04] 
[2025-06-04 10:50:04] 2025-06-04 08:49:45,748 | INFO     | **************************************
[2025-06-04 10:50:04] 2025-06-04 08:49:46,251 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-04 10:50:04] 2025-06-04 08:49:46,257 | INFO     | sufficient remaining disk space (124865478656 B)
[2025-06-04 10:50:04] 2025-06-04 08:49:46,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:50:04] 2025-06-04 08:49:46,257 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:50:04] 2025-06-04 08:49:46,258 | INFO     | update_server=False
[2025-06-04 10:50:04] 2025-06-04 08:49:46,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:50:04] 2025-06-04 08:49:46,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:50:04] 2025-06-04 08:49:46,258 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:50:04] 2025-06-04 08:49:46,258 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:50:04] 2025-06-04 08:49:46,258 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:50:04] 2025-06-04 08:49:46,258 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:50:04] 2025-06-04 08:49:46,400 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:50:04] 2025-06-04 08:49:46,693 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 10:50:04] 2025-06-04 08:49:46,693 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 10:50:04] 2025-06-04 08:49:46,693 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:50:04] 2025-06-04 08:49:46,693 | INFO     | will abort loop
[2025-06-04 10:50:04] 2025-06-04 08:49:46,925 | INFO     | all data control threads have been joined
[2025-06-04 10:50:04] 2025-06-04 08:49:47,129 | INFO     | all job control threads have been joined
[2025-06-04 10:50:04] 2025-06-04 08:49:47,263 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:47,263 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:47,632 | INFO     | all payload control threads have been joined
[2025-06-04 10:50:04] 2025-06-04 08:49:47,695 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:47,760 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:47,931 | INFO     | [data] control thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:47,968 | INFO     | [job] validate thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,047 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,093 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,135 | INFO     | [job] control thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,143 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,163 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,320 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:50:04] 2025-06-04 08:49:48,405 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,637 | INFO     | [payload] control thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:48,679 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:52,326 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:57,167 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:50:04] 2025-06-04 08:49:58,172 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:50:04] 2025-06-04 08:49:59,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139750616762176)>', '<ExcThread(monitor, started 139750216283904)>']
[2025-06-04 10:50:04] 2025-06-04 08:50:00,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:50:04] 2025-06-04 08:50:00,330 | INFO     | [monitor] control thread has ended
[2025-06-04 10:50:04] 2025-06-04 08:50:04,395 | INFO     | all workflow threads have been joined
[2025-06-04 10:50:04] 2025-06-04 08:50:04,395 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:50:04] 2025-06-04 08:50:04,396 | INFO     | traces error code: 0
[2025-06-04 10:50:04] 2025-06-04 08:50:04,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:50:04] 2025-06-04 08:50:04,472 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:50:04] 2025-06-04 08:50:04,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:50:04] 2025-06-04 08:50:04,475 [wrapper] pilotpid: 947331
[2025-06-04 10:50:04] 2025-06-04 08:50:04,476 [wrapper] Pilot exit status: 0
[2025-06-04 10:50:04] 2025-06-04 08:50:04,480 [wrapper] pandaids: 6678149998
[2025-06-04 10:50:04] 2025-06-04 08:50:04,492 [wrapper] cleanup supervisor_pilot  967136 947332
[2025-06-04 10:50:04] 2025-06-04 08:50:04,493 [wrapper] Test setup, not cleaning
[2025-06-04 10:50:04] 2025-06-04 08:50:04,494 [wrapper] apfmon messages muted
[2025-06-04 10:50:04] 2025-06-04 08:50:04,495 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:50:04] 2025-06-04 08:50:04,496 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:50:04]  *** Error codes and diagnostics ***
[2025-06-04 10:50:04]     "exeErrorCode": 0,
[2025-06-04 10:50:04]     "exeErrorDiag": "",
[2025-06-04 10:50:04]     "pilotErrorCode": 0,
[2025-06-04 10:50:04]     "pilotErrorDiag": "",
[2025-06-04 10:50:04]  *** Listing of results directory ***
[2025-06-04 10:50:04] total 389524
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:41 pilot3.tar.gz
[2025-06-04 10:50:04] -rwx------. 1 boinc boinc     37140 Jun  3 23:52 runpilot2-wrapper.sh
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc      5111 Jun  3 23:52 queuedata.json
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc       100 Jun  4 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:50:04] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 09:41 run_atlas
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc       105 Jun  4 09:41 job.xml
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc      6275 Jun  4 09:41 init_data.xml
[2025-06-04 10:50:04] -rw-r--r--. 2 boinc boinc 215112041 Jun  4 09:41 EVNT.45006593._000302.pool.root.1
[2025-06-04 10:50:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:41 start_atlas.sh
[2025-06-04 10:50:04] drwxrwx--x. 2 boinc boinc        68 Jun  4 09:41 shared
[2025-06-04 10:50:04] -rw-r--r--. 2 boinc boinc    508880 Jun  4 09:41 input.tar.gz
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc         0 Jun  4 09:41 boinc_lockfile
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc      2522 Jun  4 09:41 pandaJob.out
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc    986745 Jun  4 09:41 agis_schedconf.cvmfs.json
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc   1603667 Jun  4 09:41 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:50:04] drwx------. 4 boinc boinc      4096 Jun  4 09:41 pilot3
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc 178539847 Jun  4 10:49 HITS.45006595._046497.pool.root.1
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc      1026 Jun  4 10:49 memory_monitor_summary.json
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc    297036 Jun  4 10:49 log.45006595._046497.job.log.tgz.1
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc        95 Jun  4 10:49 pilot_heartbeat.json
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc      8192 Jun  4 10:49 boinc_mmap_file
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc      7671 Jun  4 10:49 heartbeat.json
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc        27 Jun  4 10:49 wrapper_checkpoint.txt
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc       529 Jun  4 10:49 boinc_task_state.xml
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc      4736 Jun  4 10:50 pilotlog.txt
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc    405730 Jun  4 10:50 log.45006595._046497.job.log.1
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc       357 Jun  4 10:50 output.list
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc       620 Jun  4 10:50 runtime_log
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc    716800 Jun  4 10:50 result.tar.gz
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc       648 Jun  4 10:50 W58LDmAkog7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOJmKDm38CiFo.diag
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc      8686 Jun  4 10:50 runtime_log.err
[2025-06-04 10:50:04] -rw-r--r--. 1 boinc boinc     21474 Jun  4 10:50 stderr.txt
[2025-06-04 10:50:04] HITS file was successfully produced:
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc 178539847 Jun  4 10:49 shared/HITS.pool.root.1
[2025-06-04 10:50:04]  *** Contents of shared directory: ***
[2025-06-04 10:50:04] total 385644
[2025-06-04 10:50:04] -rw-r--r--. 2 boinc boinc 215112041 Jun  4 09:41 ATLAS.root_0
[2025-06-04 10:50:04] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:41 start_atlas.sh
[2025-06-04 10:50:04] -rw-r--r--. 2 boinc boinc    508880 Jun  4 09:41 input.tar.gz
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc 178539847 Jun  4 10:49 HITS.pool.root.1
[2025-06-04 10:50:04] -rw-------. 1 boinc boinc    716800 Jun  4 10:50 result.tar.gz
10:50:05 (943650): run_atlas exited; CPU time 31051.104959
10:50:05 (943650): called boinc_finish(0)

</stderr_txt>
]]>

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