Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:01:33 (4434): wrapper (7.7.26015): starting
13:01:33 (4434): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:01:34] Arguments: --nthreads 8
[2025-06-04 13:01:34] Threads: 8
[2025-06-04 13:01:34] Checking for CVMFS
[2025-06-04 13:01:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:01:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:01:34] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:01:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:01:35] 2.11.2.0 20118 33134 91344 146777 3 60 17425467 25165825 3136 130560 0 16832027 99.805 19319373 2022 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:01:35] CVMFS is ok
[2025-06-04 13:01:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:01:35] Checking for apptainer binary...
[2025-06-04 13:01:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:01:35] Running /usr/bin/apptainer --version
[2025-06-04 13:01:35] apptainer version 1.3.2-1.el7
[2025-06-04 13:01:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:01:48] cg-vwn344.simple-grid.lan
[2025-06-04 13:01:48] apptainer works
[2025-06-04 13:01:48] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:01:48] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:01:48] Starting ATLAS job with PandaID=6678014687
[2025-06-04 13:01:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:38:27]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:38:27] 2025-06-04 15:10:30,956 | INFO     | extracted standard info from prmon json
[2025-06-04 17:38:27] 2025-06-04 15:10:30,957 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 17:38:27] 2025-06-04 15:10:30,957 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 17:38:27] 2025-06-04 15:10:30,957 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:38:27] 2025-06-04 15:10:30,957 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:38:27] 2025-06-04 15:10:30,962 | INFO     | fitting pss+swap vs Time
[2025-06-04 17:38:27] 2025-06-04 15:10:30,963 | INFO     | sum of square deviations: 3871990738.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,965 | INFO     | sum of deviations: 98832701968.99995
[2025-06-04 17:38:27] 2025-06-04 15:10:30,966 | INFO     | mean x: 1749042648.5
[2025-06-04 17:38:27] 2025-06-04 15:10:30,966 | INFO     | mean y: 2417859.3362068967
[2025-06-04 17:38:27] 2025-06-04 15:10:30,966 | INFO     | -- intersect: -44641958252.87516
[2025-06-04 17:38:27] 2025-06-04 15:10:30,966 | INFO     | intersect: -44641958252.87516
[2025-06-04 17:38:27] 2025-06-04 15:10:30,966 | INFO     | chi2: 7.403591578652781
[2025-06-04 17:38:27] 2025-06-04 15:10:30,967 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,969 | INFO     | sum of deviations: 111702982840.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,969 | INFO     | mean x: 1749042496.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,969 | INFO     | mean y: 2425704.515418502
[2025-06-04 17:38:27] 2025-06-04 15:10:30,969 | INFO     | -- intersect: -53863926277.34735
[2025-06-04 17:38:27] 2025-06-04 15:10:30,969 | INFO     | intersect: -53863926277.34735
[2025-06-04 17:38:27] 2025-06-04 15:10:30,969 | INFO     | chi2: 6.702613226805919
[2025-06-04 17:38:27] 2025-06-04 15:10:30,970 | INFO     | current chi2=6.702613226805919 (change=9.468085109773408 %)
[2025-06-04 17:38:27] 2025-06-04 15:10:30,970 | INFO     | right removable region: 226
[2025-06-04 17:38:27] 2025-06-04 15:10:30,970 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,976 | INFO     | sum of deviations: 19156215702.999992
[2025-06-04 17:38:27] 2025-06-04 15:10:30,976 | INFO     | mean x: 1749042801.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,977 | INFO     | mean y: 2467416.784140969
[2025-06-04 17:38:27] 2025-06-04 15:10:30,977 | INFO     | -- intersect: -9235205664.121103
[2025-06-04 17:38:27] 2025-06-04 15:10:30,977 | INFO     | intersect: -9235205664.121103
[2025-06-04 17:38:27] 2025-06-04 15:10:30,977 | INFO     | chi2: 2.5258747536747856
[2025-06-04 17:38:27] 2025-06-04 15:10:30,977 | INFO     | current chi2=2.5258747536747856 (change=65.88311596012682 %)
[2025-06-04 17:38:27] 2025-06-04 15:10:30,978 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 17:38:27] 2025-06-04 15:10:30,980 | INFO     | sum of deviations: -24715002963.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,980 | INFO     | mean x: 1749042953.5
[2025-06-04 17:38:27] 2025-06-04 15:10:30,980 | INFO     | mean y: 2495807.891891892
[2025-06-04 17:38:27] 2025-06-04 15:10:30,980 | INFO     | -- intersect: 12744349289.937294
[2025-06-04 17:38:27] 2025-06-04 15:10:30,980 | INFO     | intersect: 12744349289.937294
[2025-06-04 17:38:27] 2025-06-04 15:10:30,981 | INFO     | chi2: 0.9097533396300208
[2025-06-04 17:38:27] 2025-06-04 15:10:30,981 | INFO     | current chi2=0.9097533396300208 (change=63.9826425159656 %)
[2025-06-04 17:38:27] 2025-06-04 15:10:30,982 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,983 | INFO     | sum of deviations: -28603616262.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,984 | INFO     | mean x: 1749043106.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,984 | INFO     | mean y: 2498437.589861751
[2025-06-04 17:38:27] 2025-06-04 15:10:30,984 | INFO     | -- intersect: 15792168437.658989
[2025-06-04 17:38:27] 2025-06-04 15:10:30,984 | INFO     | intersect: 15792168437.658989
[2025-06-04 17:38:27] 2025-06-04 15:10:30,984 | INFO     | chi2: 0.8865333034235496
[2025-06-04 17:38:27] 2025-06-04 15:10:30,985 | INFO     | current chi2=0.8865333034235496 (change=2.552344156924372 %)
[2025-06-04 17:38:27] 2025-06-04 15:10:30,985 | INFO     | left removable region: 30
[2025-06-04 17:38:27] 2025-06-04 15:10:30,985 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 17:38:27] 2025-06-04 15:10:30,987 | INFO     | sum of deviations: 4361890918.5
[2025-06-04 17:38:27] 2025-06-04 15:10:30,987 | INFO     | mean x: 1749043380.5
[2025-06-04 17:38:27] 2025-06-04 15:10:30,987 | INFO     | mean y: 2494470.1683673467
[2025-06-04 17:38:27] 2025-06-04 15:10:30,987 | INFO     | -- intersect: -3265189509.454272
[2025-06-04 17:38:27] 2025-06-04 15:10:30,987 | INFO     | intersect: -3265189509.454272
[2025-06-04 17:38:27] 2025-06-04 15:10:30,988 | INFO     | chi2: 0.0014680627784774355
[2025-06-04 17:38:27] 2025-06-04 15:10:30,988 | INFO     | -- intersect: -3265189509.454272
[2025-06-04 17:38:27] 2025-06-04 15:10:30,988 | INFO     | current memory leak: 1.87 B/s (using 196 data points, chi2=0.00)
[2025-06-04 17:38:27] 2025-06-04 15:10:30,996 | INFO     | ..............................
[2025-06-04 17:38:27] 2025-06-04 15:10:30,996 | INFO     | . Timing measurements:
[2025-06-04 17:38:27] 2025-06-04 15:10:30,996 | INFO     | . get job = 0 s
[2025-06-04 17:38:27] 2025-06-04 15:10:30,996 | INFO     | . initial setup = 6 s
[2025-06-04 17:38:27] 2025-06-04 15:10:30,997 | INFO     | . payload setup = 161 s
[2025-06-04 17:38:27] 2025-06-04 15:10:30,997 | INFO     | . stage-in = 0 s
[2025-06-04 17:38:27] 2025-06-04 15:10:30,997 | INFO     | . payload execution = 14291 s
[2025-06-04 17:38:27] 2025-06-04 15:10:30,997 | INFO     | . stage-out = 10 s
[2025-06-04 17:38:27] 2025-06-04 15:10:30,997 | INFO     | . log creation = 1 s
[2025-06-04 17:38:27] 2025-06-04 15:10:30,997 | INFO     | ..............................
[2025-06-04 17:38:27] 2025-06-04 15:10:31,170 | INFO     | 
[2025-06-04 17:38:27] 2025-06-04 15:10:31,170 | INFO     | job summary report
[2025-06-04 17:38:27] 2025-06-04 15:10:31,170 | INFO     | --------------------------------------------------
[2025-06-04 17:38:27] 2025-06-04 15:10:31,170 | INFO     | PanDA job id: 6678014687
[2025-06-04 17:38:27] 2025-06-04 15:10:31,170 | INFO     | task id: 45006595
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | errors: (none)
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | pilot state: finished 
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | transexitcode: 0
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | exeerrorcode: 0
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | exeerrordiag: 
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | exitcode: 0
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | exitmsg: OK
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | cpuconsumptiontime: 52709 s
[2025-06-04 17:38:27] 2025-06-04 15:10:31,171 | INFO     | nevents: 400
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | neventsw: 0
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | pid: 22114
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | pgrp: 22114
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | corecount: 8
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | event service: False
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | sizes: {0: 2405007, 1: 2405206, 12: 2405206, 23: 2405234, 33: 2405262, 44: 2405318, 55: 2405474, 66: 2405502, 76: 2405530, 87: 2405586, 93: 2405820, 98: 2406128, 1
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | --------------------------------------------------
[2025-06-04 17:38:27] 2025-06-04 15:10:31,172 | INFO     | 
[2025-06-04 17:38:27] 2025-06-04 15:10:31,173 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 17:38:27] 2025-06-04 15:10:31,601 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,601 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,601 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,601 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,602 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,603 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:38:27] 2025-06-04 15:10:31,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,603 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:38:27] 2025-06-04 15:10:31,603 | INFO     | job 6678014687 has completed (purged errors)
[2025-06-04 17:38:27] 2025-06-04 15:10:31,603 | INFO     | overall cleanup function is called
[2025-06-04 17:38:27] 2025-06-04 15:10:32,613 | INFO     | --- collectZombieJob: --- 10, [22114]
[2025-06-04 17:38:27] 2025-06-04 15:10:32,613 | INFO     | zombie collector waiting for pid 22114
[2025-06-04 17:38:27] 2025-06-04 15:10:32,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:38:27] 2025-06-04 15:10:32,613 | INFO     | collected zombie processes
[2025-06-04 17:38:27] 2025-06-04 15:10:32,613 | INFO     | will attempt to kill all subprocesses of pid=22114
[2025-06-04 17:38:27] 2025-06-04 15:10:32,760 | INFO     | process IDs to be killed: [22114] (in reverse order)
[2025-06-04 17:38:27] 2025-06-04 15:10:33,424 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:38:27] 2025-06-04 15:10:33,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:38:27] 2025-06-04 15:10:33,428 | INFO     | did not find any defunct processes belonging to 22114
[2025-06-04 17:38:27] 2025-06-04 15:10:33,431 | INFO     | did not find any defunct processes belonging to 22114
[2025-06-04 17:38:27] 2025-06-04 15:10:33,432 | INFO     | ready for new job
[2025-06-04 17:38:27] 2025-06-04 15:10:33,432 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:38:27] 2025-06-04 15:10:33,434 | INFO     | **************************************
[2025-06-04 17:38:27] 2025-06-04 15:10:33,434 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:38:27] 2025-06-04 15:10:33,434 | INFO     | **************************************
[2025-06-04 17:38:27] 2025-06-04 15:10:33,434 | INFO     | 
[2025-06-04 17:38:27] 2025-06-04 15:10:33,435 | INFO     | pilot is running in a VM
[2025-06-04 17:38:27] 2025-06-04 15:10:33,435 | INFO     | architecture information:
[2025-06-04 17:38:27] 2025-06-04 15:10:33,442 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:38:27] 2025-06-04 15:10:33,668 | INFO     | cat /etc/os-release:
[2025-06-04 17:38:27] NAME="CentOS Linux"
[2025-06-04 17:38:27] VERSION="7 (Core)"
[2025-06-04 17:38:27] ID="centos"
[2025-06-04 17:38:27] ID_LIKE="rhel fedora"
[2025-06-04 17:38:27] VERSION_ID="7"
[2025-06-04 17:38:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:38:27] ANSI_COLOR="0;31"
[2025-06-04 17:38:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:38:27] HOME_URL="https://www.centos.org/"
[2025-06-04 17:38:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:38:27] 
[2025-06-04 17:38:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:38:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:38:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:38:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:38:27] 
[2025-06-04 17:38:27] 2025-06-04 15:10:33,668 | INFO     | **************************************
[2025-06-04 17:38:27] 2025-06-04 15:10:34,172 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 17:38:27] 2025-06-04 15:10:34,432 | INFO     | sufficient remaining disk space (496812163072 B)
[2025-06-04 17:38:27] 2025-06-04 15:10:34,432 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:38:27] 2025-06-04 15:10:34,432 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:38:27] 2025-06-04 15:10:34,432 | INFO     | update_server=False
[2025-06-04 17:38:27] 2025-06-04 15:10:34,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:38:27] 2025-06-04 15:10:34,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:38:27] 2025-06-04 15:10:34,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:38:27] 2025-06-04 15:10:34,440 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 17:38:27] 2025-06-04 15:10:34,440 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:38:27] 2025-06-04 15:10:34,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:38:27] 2025-06-04 15:10:34,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:38:27] 2025-06-04 15:10:34,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:38:27] 2025-06-04 15:10:34,586 | INFO     | aborting loop
[2025-06-04 17:38:27] 2025-06-04 15:10:34,601 | INFO     | all payload control threads have been joined
[2025-06-04 17:38:27] 2025-06-04 15:10:34,842 | INFO     | all data control threads have been joined
[2025-06-04 17:38:27] 2025-06-04 15:10:35,429 | INFO     | all job control threads have been joined
[2025-06-04 17:38:27] 2025-06-04 15:10:35,439 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:35,570 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:35,593 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:35,607 | INFO     | [payload] control thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:35,850 | INFO     | [data] control thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:35,936 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:38:27] 2025-06-04 15:10:36,360 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,413 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,435 | INFO     | [job] control thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,441 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,552 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,765 | INFO     | [job] validate thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,769 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:36,853 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:37,190 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:38,443 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:38:27] 2025-06-04 15:10:38,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140496616933184)>', '<ExcThread(monitor, started 140495913195264)>']
[2025-06-04 17:38:27] 2025-06-04 15:10:39,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:38:27] 2025-06-04 15:10:39,467 | INFO     | [monitor] control thread has ended
[2025-06-04 17:38:27] 2025-06-04 15:10:43,542 | INFO     | all workflow threads have been joined
[2025-06-04 17:38:27] 2025-06-04 15:10:43,542 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:38:27] 2025-06-04 15:10:43,542 | INFO     | traces error code: 0
[2025-06-04 17:38:27] 2025-06-04 15:10:43,542 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:38:27] 2025-06-04 15:10:43,912 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:38:27] 2025-06-04 15:10:43,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:38:27] 2025-06-04 15:10:44,017 [wrapper] pilotpid: 13481
[2025-06-04 17:38:27] 2025-06-04 15:10:44,130 [wrapper] Pilot exit status: 0
[2025-06-04 17:38:27] 2025-06-04 15:10:44,532 [wrapper] pandaids: 6678014687
[2025-06-04 17:38:27] 2025-06-04 15:10:45,311 [wrapper] cleanup supervisor_pilot  3369 13482
[2025-06-04 17:38:27] 2025-06-04 15:10:45,337 [wrapper] Test setup, not cleaning
[2025-06-04 17:38:27] 2025-06-04 15:10:45,407 [wrapper] apfmon messages muted
[2025-06-04 17:38:27] 2025-06-04 15:10:45,468 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:38:27] 2025-06-04 15:10:45,529 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:38:27]  *** Error codes and diagnostics ***
[2025-06-04 17:38:27]     "exeErrorCode": 0,
[2025-06-04 17:38:27]     "exeErrorDiag": "",
[2025-06-04 17:38:27]     "pilotErrorCode": 0,
[2025-06-04 17:38:27]     "pilotErrorDiag": "",
[2025-06-04 17:38:27]  *** Listing of results directory ***
[2025-06-04 17:38:27] total 396872
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc    495897 Jun  3 21:41 pilot3.tar.gz
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc      5111 Jun  3 21:57 queuedata.json
[2025-06-04 17:38:27] -rwx------. 1 boinc boinc     37140 Jun  3 21:58 runpilot2-wrapper.sh
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:38:27] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:01 run_atlas
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:01 job.xml
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc      6391 Jun  4 13:01 init_data.xml
[2025-06-04 17:38:27] -rw-r--r--. 2 boinc boinc 213945919 Jun  4 13:01 EVNT.45006593._001775.pool.root.1
[2025-06-04 17:38:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:01 start_atlas.sh
[2025-06-04 17:38:27] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:01 shared
[2025-06-04 17:38:27] -rw-r--r--. 2 boinc boinc    508883 Jun  4 13:01 input.tar.gz
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:01 boinc_lockfile
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc      2522 Jun  4 13:01 pandaJob.out
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc    986812 Jun  4 13:04 agis_schedconf.cvmfs.json
[2025-06-04 17:38:27] drwx------. 4 boinc boinc      4096 Jun  4 13:05 pilot3
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc 185378196 Jun  4 17:07 HITS.45006595._044290.pool.root.1
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc       530 Jun  4 17:08 boinc_task_state.xml
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc      1014 Jun  4 17:08 memory_monitor_summary.json
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc   1598969 Jun  4 17:09 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc    372692 Jun  4 17:09 log.45006595._044290.job.log.tgz.1
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc      7686 Jun  4 17:10 heartbeat.json
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc        95 Jun  4 17:10 pilot_heartbeat.json
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc      4539 Jun  4 17:10 pilotlog.txt
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc   1252576 Jun  4 17:10 log.45006595._044290.job.log.1
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc       357 Jun  4 17:10 output.list
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:10 runtime_log
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc   1648640 Jun  4 17:10 result.tar.gz
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc      8659 Jun  4 17:10 runtime_log.err
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc       657 Jun  4 17:10 5BdMDmQxmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmApZKDmUlDujm.diag
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc      8192 Jun  4 17:38 boinc_mmap_file
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc        28 Jun  4 17:38 wrapper_checkpoint.txt
[2025-06-04 17:38:27] -rw-r--r--. 1 boinc boinc     20502 Jun  4 17:38 stderr.txt
[2025-06-04 17:38:27] HITS file was successfully produced:
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc 185378196 Jun  4 17:07 shared/HITS.pool.root.1
[2025-06-04 17:38:27]  *** Contents of shared directory: ***
[2025-06-04 17:38:27] total 392096
[2025-06-04 17:38:27] -rw-r--r--. 2 boinc boinc 213945919 Jun  4 13:01 ATLAS.root_0
[2025-06-04 17:38:27] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:01 start_atlas.sh
[2025-06-04 17:38:27] -rw-r--r--. 2 boinc boinc    508883 Jun  4 13:01 input.tar.gz
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc 185378196 Jun  4 17:07 HITS.pool.root.1
[2025-06-04 17:38:27] -rw-------. 1 boinc boinc   1648640 Jun  4 17:10 result.tar.gz
17:38:29 (4434): run_atlas exited; CPU time 52909.712251
17:38:29 (4434): called boinc_finish(0)

</stderr_txt>
]]>

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