Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:12:43 (504967): wrapper (7.7.26015): starting
16:12:43 (504967): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 16:12:43] Arguments: --nthreads 4
[2025-06-05 16:12:43] Threads: 4
[2025-06-05 16:12:43] Checking for CVMFS
[2025-06-05 16:12:43] No cvmfs_config command found, will try listing directly
[2025-06-05 16:12:43] CVMFS is ok
[2025-06-05 16:12:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 16:12:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 16:12:43] Further information can be found at the LHC@home message board.
[2025-06-05 16:12:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 16:12:43] Checking for apptainer binary...
[2025-06-05 16:12:43] which: no apptainer in ((null))
[2025-06-05 16:12:43] apptainer is not installed, using version from CVMFS
[2025-06-05 16:12:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 16:12:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-05 16:12:44] apptainer works
[2025-06-05 16:12:44] Set ATHENA_PROC_NUMBER=4
[2025-06-05 16:12:44] Set ATHENA_CORE_NUMBER=4
[2025-06-05 16:12:44] Starting ATLAS job with PandaID=6678075850
[2025-06-05 16:12:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 18:16:43]  *** The last 200 lines of the pilot log: ***
[2025-06-05 18:16:43] 2025-06-05 16:16:14,661 | INFO     | total number of processed events: 400 (read)
[2025-06-05 18:16:43] 2025-06-05 16:16:14,669 | INFO     | executing command: lscpu
[2025-06-05 18:16:43] 2025-06-05 16:16:14,787 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 18:16:43] 2025-06-05 16:16:16,738 | INFO     | monitor loop #516: job 0:6678075850 is in state 'finished'
[2025-06-05 18:16:43] 2025-06-05 16:16:16,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 18:16:43] 2025-06-05 16:16:19,242 | INFO     | monitor loop #517: job 0:6678075850 is in state 'finished'
[2025-06-05 18:16:43] 2025-06-05 16:16:19,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,467 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 18:16:43] 2025-06-05 16:16:20,468 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6678075850/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,468 | INFO     | extracted standard info from prmon json
[2025-06-05 18:16:43] 2025-06-05 16:16:20,468 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 18:16:43] 2025-06-05 16:16:20,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 18:16:43] 2025-06-05 16:16:20,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 18:16:43] 2025-06-05 16:16:20,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 18:16:43] 2025-06-05 16:16:20,472 | INFO     | fitting pss+swap vs Time
[2025-06-05 18:16:43] 2025-06-05 16:16:20,472 | INFO     | sum of square deviations: 549294020.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,472 | INFO     | sum of deviations: 13576782078.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,473 | INFO     | mean x: 1749136470.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,473 | INFO     | mean y: 2292788.1652892563
[2025-06-05 18:16:43] 2025-06-05 16:16:20,473 | INFO     | -- intersect: -43230736906.70046
[2025-06-05 18:16:43] 2025-06-05 16:16:20,473 | INFO     | intersect: -43230736906.70046
[2025-06-05 18:16:43] 2025-06-05 16:16:20,473 | INFO     | chi2: 1.551482298028284
[2025-06-05 18:16:43] 2025-06-05 16:16:20,473 | INFO     | sum of square deviations: 483971865.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,474 | INFO     | sum of deviations: 13035136481.999996
[2025-06-05 18:16:43] 2025-06-05 16:16:20,474 | INFO     | mean x: 1749136317.5
[2025-06-05 18:16:43] 2025-06-05 16:16:20,474 | INFO     | mean y: 2291523.2413793104
[2025-06-05 18:16:43] 2025-06-05 16:16:20,474 | INFO     | -- intersect: -47108361539.69106
[2025-06-05 18:16:43] 2025-06-05 16:16:20,474 | INFO     | intersect: -47108361539.69106
[2025-06-05 18:16:43] 2025-06-05 16:16:20,475 | INFO     | chi2: 1.5542093313280718
[2025-06-05 18:16:43] 2025-06-05 16:16:20,475 | INFO     | current chi2=1.5542093313280718 (change=-0.17576954008778678 %)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,475 | INFO     | right removable region: 115
[2025-06-05 18:16:43] 2025-06-05 16:16:20,475 | INFO     | sum of square deviations: 483971865.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,475 | INFO     | sum of deviations: -4255201034.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,475 | INFO     | mean x: 1749136622.5
[2025-06-05 18:16:43] 2025-06-05 16:16:20,476 | INFO     | mean y: 2333673.0517241377
[2025-06-05 18:16:43] 2025-06-05 16:16:20,476 | INFO     | -- intersect: 15381177988.039473
[2025-06-05 18:16:43] 2025-06-05 16:16:20,476 | INFO     | intersect: 15381177988.039473
[2025-06-05 18:16:43] 2025-06-05 16:16:20,476 | INFO     | chi2: 0.008284806294550374
[2025-06-05 18:16:43] 2025-06-05 16:16:20,476 | INFO     | current chi2=0.008284806294550374 (change=99.46600703694271 %)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,476 | INFO     | sum of square deviations: 424045160.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | sum of deviations: -3104442561.0000005
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | mean x: 1749136775.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | mean y: 2330743.6756756757
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | -- intersect: 12807793844.16309
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | intersect: 12807793844.16309
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | chi2: 0.006695246496313184
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | current chi2=0.006695246496313184 (change=19.186444941781915 %)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,477 | INFO     | left removable region: 20
[2025-06-05 18:16:43] 2025-06-05 16:16:20,478 | INFO     | sum of square deviations: 265828240.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,478 | INFO     | sum of deviations: -969127740.0000001
[2025-06-05 18:16:43] 2025-06-05 16:16:20,478 | INFO     | mean x: 1749136897.0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,478 | INFO     | mean y: 2324977.652631579
[2025-06-05 18:16:43] 2025-06-05 16:16:20,478 | INFO     | -- intersect: 6379138396.498661
[2025-06-05 18:16:43] 2025-06-05 16:16:20,478 | INFO     | intersect: 6379138396.498661
[2025-06-05 18:16:43] 2025-06-05 16:16:20,479 | INFO     | chi2: 0.000793157736243373
[2025-06-05 18:16:43] 2025-06-05 16:16:20,479 | INFO     | -- intersect: 6379138396.498661
[2025-06-05 18:16:43] 2025-06-05 16:16:20,479 | INFO     | current memory leak: -3.65 B/s (using 95 data points, chi2=0.00)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,479 | INFO     | ..............................
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . Timing measurements:
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . get job = 0 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . initial setup = 1 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . payload setup = 9 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . stage-in = 0 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . payload execution = 7363 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . stage-out = 0 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | . log creation = 0 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,480 | INFO     | ..............................
[2025-06-05 18:16:43] 2025-06-05 16:16:20,574 | INFO     | 
[2025-06-05 18:16:43] 2025-06-05 16:16:20,574 | INFO     | job summary report
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | --------------------------------------------------
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | PanDA job id: 6678075850
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | task id: 45006595
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | errors: (none)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | pilot state: finished 
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | transexitcode: 0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | exeerrorcode: 0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | exeerrordiag: 
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | exitcode: 0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | exitmsg: OK
[2025-06-05 18:16:43] 2025-06-05 16:16:20,575 | INFO     | cpuconsumptiontime: 27757 s
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | nevents: 400
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | neventsw: 0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | pid: 517006
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | pgrp: 517006
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | corecount: 4
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | event service: False
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | sizes: {0: 2397240, 1: 2397382, 7: 2397588, 11: 2397616, 7376: 2425163, 7377: 2425162, 7378: 2434311, 7381: 2434367, 7387: 2434537}
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | --------------------------------------------------
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | 
[2025-06-05 18:16:43] 2025-06-05 16:16:20,576 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-06-05 18:16:43] 2025-06-05 16:16:20,605 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,605 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,605 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,605 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,605 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,605 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,606 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 18:16:43] 2025-06-05 16:16:20,607 | INFO     | job 6678075850 has completed (purged errors)
[2025-06-05 18:16:43] 2025-06-05 16:16:20,607 | INFO     | overall cleanup function is called
[2025-06-05 18:16:43] 2025-06-05 16:16:21,616 | INFO     | --- collectZombieJob: --- 10, [517006]
[2025-06-05 18:16:43] 2025-06-05 16:16:21,616 | INFO     | zombie collector waiting for pid 517006
[2025-06-05 18:16:43] 2025-06-05 16:16:21,616 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 18:16:43] 2025-06-05 16:16:21,616 | INFO     | collected zombie processes
[2025-06-05 18:16:43] 2025-06-05 16:16:21,617 | INFO     | will attempt to kill all subprocesses of pid=517006
[2025-06-05 18:16:43] 2025-06-05 16:16:22,208 | INFO     | process IDs to be killed: [517006] (in reverse order)
[2025-06-05 18:16:43] 2025-06-05 16:16:22,288 | INFO     | 7407s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 18:16:43] 2025-06-05 16:16:22,434 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 18:16:43] 2025-06-05 16:16:22,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 18:16:43] 2025-06-05 16:16:22,458 | INFO     | did not find any defunct processes belonging to 517006
[2025-06-05 18:16:43] 2025-06-05 16:16:22,476 | INFO     | did not find any defunct processes belonging to 517006
[2025-06-05 18:16:43] 2025-06-05 16:16:22,477 | INFO     | ready for new job
[2025-06-05 18:16:43] 2025-06-05 16:16:22,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 18:16:43] 2025-06-05 16:16:22,479 | INFO     | **************************************
[2025-06-05 18:16:43] 2025-06-05 16:16:22,479 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 18:16:43] 2025-06-05 16:16:22,479 | INFO     | **************************************
[2025-06-05 18:16:43] 2025-06-05 16:16:22,479 | INFO     | 
[2025-06-05 18:16:43] 2025-06-05 16:16:22,487 | INFO     | architecture information:
[2025-06-05 18:16:43] 2025-06-05 16:16:22,487 | INFO     | executing command: cat /etc/os-release
[2025-06-05 18:16:43] 2025-06-05 16:16:22,510 | INFO     | cat /etc/os-release:
[2025-06-05 18:16:43] NAME="CentOS Linux"
[2025-06-05 18:16:43] VERSION="7 (Core)"
[2025-06-05 18:16:43] ID="centos"
[2025-06-05 18:16:43] ID_LIKE="rhel fedora"
[2025-06-05 18:16:43] VERSION_ID="7"
[2025-06-05 18:16:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 18:16:43] ANSI_COLOR="0;31"
[2025-06-05 18:16:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 18:16:43] HOME_URL="https://www.centos.org/"
[2025-06-05 18:16:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 18:16:43] 
[2025-06-05 18:16:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 18:16:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 18:16:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 18:16:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 18:16:43] 
[2025-06-05 18:16:43] 2025-06-05 16:16:22,510 | INFO     | **************************************
[2025-06-05 18:16:43] 2025-06-05 16:16:23,013 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-06-05 18:16:43] 2025-06-05 16:16:23,041 | INFO     | sufficient remaining disk space (3274343186432 B)
[2025-06-05 18:16:43] 2025-06-05 16:16:23,041 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 18:16:43] 2025-06-05 16:16:23,042 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 18:16:43] 2025-06-05 16:16:23,042 | INFO     | update_server=False
[2025-06-05 18:16:43] 2025-06-05 16:16:23,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 18:16:43] 2025-06-05 16:16:23,042 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:16:43] 2025-06-05 16:16:23,042 | INFO     | aborting loop
[2025-06-05 18:16:43] 2025-06-05 16:16:23,295 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 18:16:43] 2025-06-05 16:16:23,297 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 18:16:43] 2025-06-05 16:16:23,297 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 18:16:43] 2025-06-05 16:16:23,439 | INFO     | all payload control threads have been joined
[2025-06-05 18:16:43] 2025-06-05 16:16:23,543 | INFO     | all data control threads have been joined
[2025-06-05 18:16:43] 2025-06-05 16:16:24,047 | INFO     | [job] retrieve thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,048 | INFO     | [job] job monitor thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,268 | INFO     | [job] validate thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,399 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,411 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,422 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,433 | INFO     | [payload] validate_post thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,445 | INFO     | [payload] control thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,452 | INFO     | all job control threads have been joined
[2025-06-05 18:16:43] 2025-06-05 16:16:24,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 18:16:43] 2025-06-05 16:16:24,549 | INFO     | [data] control thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,744 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:24,914 | INFO     | [data] copytool_in thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:25,168 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 18:16:43] 2025-06-05 16:16:25,449 | INFO     | [payload] failed_post thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:25,457 | INFO     | [job] control thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:25,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 18:16:43] 2025-06-05 16:16:26,550 | INFO     | [data] copytool_out thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:26,591 | INFO     | [job] queue monitor thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:29,174 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 18:16:43] 2025-06-05 16:16:30,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22379681285952)>', '<ExcThread(monitor, started 22379440858880)>']
[2025-06-05 18:16:43] 2025-06-05 16:16:30,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 18:16:43] 2025-06-05 16:16:30,329 | INFO     | [monitor] control thread has ended
[2025-06-05 18:16:43] 2025-06-05 16:16:35,270 | INFO     | all workflow threads have been joined
[2025-06-05 18:16:43] 2025-06-05 16:16:35,272 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 18:16:43] 2025-06-05 16:16:35,272 | INFO     | traces error code: 0
[2025-06-05 18:16:43] 2025-06-05 16:16:35,272 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 18:16:43] 2025-06-05 16:16:35,463 [wrapper] ==== pilot stdout END ====
[2025-06-05 18:16:43] 2025-06-05 16:16:35,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 18:16:43] 2025-06-05 16:16:35,471 [wrapper] pilotpid: 509322
[2025-06-05 18:16:43] 2025-06-05 16:16:35,474 [wrapper] Pilot exit status: 0
[2025-06-05 18:16:43] 2025-06-05 16:16:35,487 [wrapper] pandaids: 6678075850
[2025-06-05 18:16:43] 2025-06-05 16:16:35,627 [wrapper] cleanup supervisor_pilot  942063 509323
[2025-06-05 18:16:43] 2025-06-05 16:16:35,632 [wrapper] Test setup, not cleaning
[2025-06-05 18:16:43] 2025-06-05 16:16:35,635 [wrapper] apfmon messages muted
[2025-06-05 18:16:43] 2025-06-05 16:16:35,639 [wrapper] ==== wrapper stdout END ====
[2025-06-05 18:16:43] 2025-06-05 16:16:35,642 [wrapper] ==== wrapper stderr END ====
[2025-06-05 18:16:43]  *** Error codes and diagnostics ***
[2025-06-05 18:16:43]     "exeErrorCode": 0,
[2025-06-05 18:16:43]     "exeErrorDiag": "",
[2025-06-05 18:16:43]     "pilotErrorCode": 0,
[2025-06-05 18:16:43]     "pilotErrorDiag": "",
[2025-06-05 18:16:43]  *** Listing of results directory ***
[2025-06-05 18:16:43] total 383460
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:41 pilot3.tar.gz
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:49 queuedata.json
[2025-06-05 18:16:43] -rwx------ 1 boinc boinc     37140 Jun  3 23:49 runpilot2-wrapper.sh
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc       100 Jun  5 16:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 18:16:43] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 16:12 run_atlas
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc       105 Jun  5 16:12 job.xml
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc      6687 Jun  5 16:12 init_data.xml
[2025-06-05 18:16:43] -rw-r--r-- 2 boinc boinc 212890470 Jun  5 16:12 EVNT.45006593._001863.pool.root.1
[2025-06-05 18:16:43] -rw-r--r-- 2 boinc boinc     15093 Jun  5 16:12 start_atlas.sh
[2025-06-05 18:16:43] drwxrwx--x 2 boinc boinc      4096 Jun  5 16:12 shared
[2025-06-05 18:16:43] -rw-r--r-- 2 boinc boinc    508881 Jun  5 16:12 input.tar.gz
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc         0 Jun  5 16:12 boinc_lockfile
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc      2525 Jun  5 16:12 pandaJob.out
[2025-06-05 18:16:43] -rw------- 1 boinc boinc    983210 Jun  5 16:12 agis_schedconf.cvmfs.json
[2025-06-05 18:16:43] -rw------- 1 boinc boinc   1598969 Jun  5 16:12 agis_ddmendpoints.agis.ALL.json
[2025-06-05 18:16:43] drwx------ 4 boinc boinc      4096 Jun  5 16:12 pilot3
[2025-06-05 18:16:43] -rw------- 1 boinc boinc 173970348 Jun  5 18:15 HITS.45006595._046457.pool.root.1
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc       529 Jun  5 18:15 boinc_task_state.xml
[2025-06-05 18:16:43] -rw------- 1 boinc boinc      1030 Jun  5 18:16 memory_monitor_summary.json
[2025-06-05 18:16:43] -rw------- 1 boinc boinc    281237 Jun  5 18:16 log.45006595._046457.job.log.tgz.1
[2025-06-05 18:16:43] -rw------- 1 boinc boinc      7699 Jun  5 18:16 heartbeat.json
[2025-06-05 18:16:43] -rw------- 1 boinc boinc        95 Jun  5 18:16 pilot_heartbeat.json
[2025-06-05 18:16:43] -rw------- 1 boinc boinc      4365 Jun  5 18:16 pilotlog.txt
[2025-06-05 18:16:43] -rw------- 1 boinc boinc    702231 Jun  5 18:16 log.45006595._046457.job.log.1
[2025-06-05 18:16:43] -rw------- 1 boinc boinc       357 Jun  5 18:16 output.list
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc       620 Jun  5 18:16 runtime_log
[2025-06-05 18:16:43] -rw------- 1 boinc boinc   1003520 Jun  5 18:16 result.tar.gz
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc      9040 Jun  5 18:16 runtime_log.err
[2025-06-05 18:16:43] -rw------- 1 boinc boinc       662 Jun  5 18:16 N9jNDm4gog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmL3ZKDmPgAHLn.diag
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc        27 Jun  5 18:16 wrapper_checkpoint.txt
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc      8192 Jun  5 18:16 boinc_mmap_file
[2025-06-05 18:16:43] -rw-r--r-- 1 boinc boinc     20932 Jun  5 18:16 stderr.txt
[2025-06-05 18:16:43] HITS file was successfully produced:
[2025-06-05 18:16:43] -rw------- 1 boinc boinc 173970348 Jun  5 18:15 shared/HITS.pool.root.1
[2025-06-05 18:16:43]  *** Contents of shared directory: ***
[2025-06-05 18:16:43] total 379304
[2025-06-05 18:16:43] -rw-r--r-- 2 boinc boinc 212890470 Jun  5 16:12 ATLAS.root_0
[2025-06-05 18:16:43] -rw-r--r-- 2 boinc boinc     15093 Jun  5 16:12 start_atlas.sh
[2025-06-05 18:16:43] -rw-r--r-- 2 boinc boinc    508881 Jun  5 16:12 input.tar.gz
[2025-06-05 18:16:43] -rw------- 1 boinc boinc 173970348 Jun  5 18:15 HITS.pool.root.1
[2025-06-05 18:16:43] -rw------- 1 boinc boinc   1003520 Jun  5 18:16 result.tar.gz
18:16:44 (504967): run_atlas exited; CPU time 28184.983381
18:16:44 (504967): called boinc_finish(0)

</stderr_txt>
]]>

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