Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 13:08:06 (18708): Detected: vboxwrapper 26206
2025-06-04 13:08:06 (18708): Detected: BOINC client v8.0.2
2025-06-04 13:08:06 (18708): Detected: VirtualBox VboxManage Interface (Version: 6.1.38)
2025-06-04 13:08:06 (18708): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 13:08:07 (18708): Create VM. (boinc_19edb4b6b052b701, slot#40)
2025-06-04 13:08:07 (18708): Setting Memory Size for VM. (4800MB)
2025-06-04 13:08:08 (18708): Setting CPU Count for VM. (8)
2025-06-04 13:08:08 (18708): Setting Chipset Options for VM.
2025-06-04 13:08:08 (18708): Setting Graphics Controller Options for VM.
2025-06-04 13:08:09 (18708): Setting Boot Options for VM.
2025-06-04 13:08:09 (18708): Setting Network Configuration for NAT.
2025-06-04 13:08:09 (18708): Enabling VM Network Access.
2025-06-04 13:08:09 (18708): Disabling USB Support for VM.
2025-06-04 13:08:10 (18708): Disabling COM Port Support for VM.
2025-06-04 13:08:10 (18708): Disabling LPT Port Support for VM.
2025-06-04 13:08:10 (18708): Disabling Audio Support for VM.
2025-06-04 13:08:10 (18708): Disabling Clipboard Support for VM.
2025-06-04 13:08:11 (18708): Disabling Drag and Drop Support for VM.
2025-06-04 13:08:11 (18708): Adding storage controller(s) to VM.
2025-06-04 13:08:11 (18708): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 13:08:12 (18708): Adding VirtualBox Guest Additions to VM.
2025-06-04 13:08:12 (18708): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 13:08:12 (18708): forwarding host port 52717 to guest port 80
2025-06-04 13:08:12 (18708): Enabling remote desktop for VM.
2025-06-04 13:08:13 (18708): Required extension pack not installed, remote desktop not enabled.
2025-06-04 13:08:13 (18708): Enabling shared directory for VM.
2025-06-04 13:08:13 (18708): Starting VM using VBoxManage interface. (boinc_19edb4b6b052b701, slot#40)
2025-06-04 13:08:18 (18708): Successfully started VM. (PID = '19856')
2025-06-04 13:08:18 (18708): Reporting VM Process ID to BOINC.
2025-06-04 13:08:18 (18708): Guest Log: BIOS: VirtualBox 6.1.38
2025-06-04 13:08:18 (18708): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 13:08:18 (18708): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 13:08:18 (18708): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 13:08:18 (18708): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 13:08:18 (18708): Detected: Web Application Enabled (http://localhost:52717)
2025-06-04 13:08:18 (18708): Preference change detected
2025-06-04 13:08:18 (18708): Setting CPU throttle for VM. (100%)
2025-06-04 13:08:18 (18708): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 13:08:20 (18708): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 13:08:20 (18708): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 13:08:22 (18708): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 13:08:22 (18708): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 13:08:22 (18708): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 13:08:30 (18708): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 13:08:30 (18708): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 13:08:34 (18708): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.000128 main     Log opened 2025-06-04T13:08:32.384494000Z
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.000224 main     OS Product: Linux
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.000250 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.000271 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.000292 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.000293 main     Process ID: 1364
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.000293 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 13:08:34 (18708): Guest Log: 00:00:00.001111 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 13:08:34 (18708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 13:08:34 (18708): Guest Log: [INFO] Mounting shared directory
2025-06-04 13:08:34 (18708): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 13:08:38 (18708): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 13:08:38 (18708): Guest Log: [INFO] Detected branch: prod
2025-06-04 13:08:38 (18708): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 13:08:38 (18708): Guest Log: Copying input files
2025-06-04 13:08:39 (18708): Guest Log: Copied input files into RunAtlas.
2025-06-04 13:08:39 (18708): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 13:08:39 (18708): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 13:08:39 (18708): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 13:08:39 (18708): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 13:08:44 (18708): Guest Log: 00:00:10.003438 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 443 582 000ns (GuestNow=1 749 006 523 943 089 000 ns GuestLast=1 749 042 512 386 671 000 ns fSetTimeLastLoop=true )
2025-06-04 13:08:54 (18708): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 13:08:54 (18708): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 13:08:54 (18708): Guest Log: 2.6.3.0 1644 0 30164 146765 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 13:08:55 (18708): Guest Log: copied the webapp to /var/www
2025-06-04 13:08:55 (18708): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 13:08:55 (18708): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 13:08:55 (18708): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 13:08:55 (18708): Guest Log:  *** Starting ATLAS job. (PandaID=6666596118 taskID=44871837) ***
2025-06-04 14:48:22 (18708): Status Report: Elapsed Time: '6000.000000'
2025-06-04 14:48:22 (18708): Status Report: CPU Time: '37592.593750'
2025-06-04 16:03:44 (18708): Guest Log:  *** Job finished ***
2025-06-04 16:03:44 (18708): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:31,195 | INFO     | [data] copytool_out thread has finished
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:31,824 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:35,853 | INFO     | [data] queue_monitor thread has finished
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:38,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140156920018752)>', '<ExcThread(monitor, started 140156099086080)>']
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:38,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:38,792 | INFO     | [monitor] control thread has ended
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,175 | INFO     | all workflow threads have been joined
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,175 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,176 | INFO     | traces error code: 0
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,176 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,269 [wrapper] ==== pilot stdout END ====
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,275 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,280 [wrapper] pilotpid: 5990
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,286 [wrapper] Pilot exit status: 0
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,362 [wrapper] pandaids: 6666596118
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,400 [wrapper] cleanup supervisor_pilot  6567 5991
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,408 [wrapper] Test setup, not cleaning
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,414 [wrapper] apfmon messages muted
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,420 [wrapper] ==== wrapper stdout END ====
2025-06-04 16:03:44 (18708): Guest Log: 2025-06-04 06:03:43,426 [wrapper] ==== wrapper stderr END ====
2025-06-04 16:03:44 (18708): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 16:03:44 (18708): Guest Log:     "exeErrorCode": 0,
2025-06-04 16:03:44 (18708): Guest Log:     "exeErrorDiag": "",
2025-06-04 16:03:44 (18708): Guest Log:     "pilotErrorCode": 0,
2025-06-04 16:03:44 (18708): Guest Log:     "pilotErrorDiag": "",
2025-06-04 16:03:44 (18708): Guest Log:  *** Listing of results directory ***
2025-06-04 16:03:44 (18708): Guest Log: total 194756
2025-06-04 16:03:44 (18708): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 01:12 pilot3.tar.gz
2025-06-04 16:03:44 (18708): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 02:12 queuedata.json
2025-06-04 16:03:44 (18708): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 02:13 runpilot2-wrapper.sh
2025-06-04 16:03:44 (18708): Guest Log: -rwxr-xr-x. 1 atlas atlas      9345 Jun  4 03:08 init_data.xml
2025-06-04 16:03:44 (18708): Guest Log: -rwxr-xr-x. 1 atlas atlas    508875 Jun  4 03:08 input.tar.gz
2025-06-04 16:03:44 (18708): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 03:08 start_atlas.sh
2025-06-04 16:03:44 (18708): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 03:08 EVNT.44871834._002395.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 16:03:44 (18708): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  4 03:08 pandaJob.out
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas    986077 Jun  4 03:10 agis_schedconf.cvmfs.json
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 03:10 agis_ddmendpoints.agis.ALL.json
2025-06-04 16:03:44 (18708): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 03:10 pilot3
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas 193242186 Jun  4 06:02 HITS.44871837._060613.pool.root.1
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 06:03 pilot_heartbeat.json
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas      1033 Jun  4 06:03 memory_monitor_summary.json
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas    346006 Jun  4 06:03 log.44871837._060613.job.log.tgz.1
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas      7736 Jun  4 06:03 heartbeat.json
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  4 06:03 pilotlog.txt
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas    867977 Jun  4 06:03 log.44871837._060613.job.log.1
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 06:03 output.list
2025-06-04 16:03:44 (18708): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 06:03 runtime_log
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas   1228800 Jun  4 06:03 result.tar.gz
2025-06-04 16:03:44 (18708): Guest Log: -rw-r--r--. 1 atlas atlas      8581 Jun  4 06:03 runtime_log.err
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas       653 Jun  4 06:03 pmQKDmtzyd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUIYKDmNlT9Ym.diag
2025-06-04 16:03:44 (18708): Guest Log: Looking for outputfile HITS.44871837._060613.pool.root.1
2025-06-04 16:03:44 (18708): Guest Log: HITS file was successfully produced
2025-06-04 16:03:44 (18708): Guest Log: -rw-------. 1 atlas atlas 193242186 Jun  4 06:02 /home/atlas/RunAtlas/HITS.44871837._060613.pool.root.1
2025-06-04 16:03:45 (18708): Guest Log: Successfully finished the ATLAS job!
2025-06-04 16:03:45 (18708): Guest Log: Copying the results back to the shared directory!
2025-06-04 16:03:45 (18708): Guest Log:  *** Contents of shared directory: ***
2025-06-04 16:03:46 (18708): Guest Log: total 409428
2025-06-04 16:03:46 (18708): Guest Log: -rwxrwxrwx. 1 root root 224236987 Jun  4 03:08 ATLAS.root_0
2025-06-04 16:03:46 (18708): Guest Log: -rwxrwxrwx. 1 root root 193242186 Jun  4 06:03 HITS.pool.root.1
2025-06-04 16:03:46 (18708): Guest Log: -rwxrwxrwx. 1 root root      9345 Jun  4 03:08 init_data.xml
2025-06-04 16:03:46 (18708): Guest Log: -rwxrwxrwx. 1 root root    508875 Jun  4 03:05 input.tar.gz
2025-06-04 16:03:46 (18708): Guest Log: -rwxrwxrwx. 1 root root   1228800 Jun  4 06:03 result.tar.gz
2025-06-04 16:03:46 (18708): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 03:05 start_atlas.sh
2025-06-04 16:03:46 (18708): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 16:03:46 (18708): VM Completion File Detected.
2025-06-04 16:03:46 (18708): Powering off VM.
2025-06-04 16:03:47 (18708): Successfully stopped VM.
2025-06-04 16:03:47 (18708): Deregistering VM. (boinc_19edb4b6b052b701, slot#40)
2025-06-04 16:03:47 (18708): Removing network bandwidth throttle group from VM.
2025-06-04 16:03:47 (18708): Removing VM from VirtualBox.
16:03:52 (18708): called boinc_finish(0)

</stderr_txt>
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