Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 09:29:53 (22144): Detected: vboxwrapper 26206
2025-06-04 09:29:53 (22144): Detected: BOINC client v8.0.2
2025-06-04 09:29:54 (22144): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-04 09:29:54 (22144): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 09:29:54 (22144): Create VM. (boinc_2464b36f58cb41c0, slot#5)
2025-06-04 09:29:55 (22144): Setting Memory Size for VM. (4800MB)
2025-06-04 09:29:55 (22144): Setting CPU Count for VM. (8)
2025-06-04 09:29:55 (22144): Setting Chipset Options for VM.
2025-06-04 09:29:56 (22144): Setting Graphics Controller Options for VM.
2025-06-04 09:29:56 (22144): Setting Boot Options for VM.
2025-06-04 09:29:56 (22144): Setting Network Configuration for NAT.
2025-06-04 09:29:56 (22144): Enabling VM Network Access.
2025-06-04 09:29:57 (22144): Disabling USB Support for VM.
2025-06-04 09:29:57 (22144): Disabling COM Port Support for VM.
2025-06-04 09:29:57 (22144): Disabling LPT Port Support for VM.
2025-06-04 09:29:58 (22144): Disabling Audio Support for VM.
2025-06-04 09:29:58 (22144): Disabling Clipboard Support for VM.
2025-06-04 09:29:58 (22144): Disabling Drag and Drop Support for VM.
2025-06-04 09:29:58 (22144): Adding storage controller(s) to VM.
2025-06-04 09:29:59 (22144): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 09:30:01 (22144): Adding VirtualBox Guest Additions to VM.
2025-06-04 09:30:02 (22144): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 09:30:02 (22144): forwarding host port 55127 to guest port 80
2025-06-04 09:30:02 (22144): Enabling remote desktop for VM.
2025-06-04 09:30:02 (22144): Required extension pack not installed, remote desktop not enabled.
2025-06-04 09:30:02 (22144): Enabling shared directory for VM.
2025-06-04 09:30:03 (22144): Starting VM using VBoxManage interface. (boinc_2464b36f58cb41c0, slot#5)
2025-06-04 09:30:08 (22144): Successfully started VM. (PID = '23872')
2025-06-04 09:30:08 (22144): Reporting VM Process ID to BOINC.
2025-06-04 09:30:08 (22144): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-04 09:30:08 (22144): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 09:30:08 (22144): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 09:30:08 (22144): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 09:30:08 (22144): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 09:30:08 (22144): Detected: Web Application Enabled (http://localhost:55127)
2025-06-04 09:30:08 (22144): Preference change detected
2025-06-04 09:30:08 (22144): Setting CPU throttle for VM. (100%)
2025-06-04 09:30:08 (22144): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 800 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 09:30:10 (22144): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 09:30:10 (22144): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 09:30:13 (22144): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 09:30:13 (22144): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 09:30:13 (22144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 09:30:19 (22144): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 09:30:19 (22144): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 09:30:23 (22144): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000099 main     Log opened 2025-06-04T09:30:22.021778000Z
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000164 main     OS Product: Linux
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000223 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000250 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000274 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000275 main     Process ID: 1365
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000275 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 09:30:23 (22144): Guest Log: 00:00:00.000828 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 09:30:23 (22144): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 09:30:23 (22144): Guest Log: [INFO] Mounting shared directory
2025-06-04 09:30:23 (22144): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 09:30:33 (22144): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 09:30:33 (22144): Guest Log: [INFO] Detected branch: prod
2025-06-04 09:30:33 (22144): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 09:30:33 (22144): Guest Log: Copying input files
2025-06-04 09:30:33 (22144): Guest Log: 00:00:10.003020 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 918 271 000ns (GuestNow=1 749 022 233 105 193 000 ns GuestLast=1 749 029 422 023 464 000 ns fSetTimeLastLoop=true )
2025-06-04 09:30:34 (22144): Guest Log: Copied input files into RunAtlas.
2025-06-04 09:30:34 (22144): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 09:30:34 (22144): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 09:30:34 (22144): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 09:30:34 (22144): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 09:30:42 (22144): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 09:30:42 (22144): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 09:30:42 (22144): Guest Log: 2.6.3.0 1647 0 30168 146772 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 09:30:42 (22144): Guest Log: copied the webapp to /var/www
2025-06-04 09:30:42 (22144): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 09:30:42 (22144): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 09:30:42 (22144): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 09:30:42 (22144): Guest Log:  *** Starting ATLAS job. (PandaID=6666807550 taskID=44871837) ***
2025-06-04 09:46:08 (22144): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 10:33:03 (22144): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 10:33:12 (22144): Guest Log: 00:15:53.435973 timesync vgsvcTimeSyncWorker: Radical host time change: 2 822 160 000 000ns (HostNow=1 749 025 971 006 000 000 ns HostLast=1 749 023 148 846 000 000 ns)
2025-06-04 10:33:22 (22144): Guest Log: 00:16:03.436198 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 804 468 886 000ns (GuestNow=1 749 025 981 006 639 000 ns GuestLast=1 749 023 176 537 753 000 ns fSetTimeLastLoop=true )
2025-06-04 11:44:58 (22144): Guest Log:  *** Job finished ***
2025-06-04 11:44:58 (22144): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:27,371 | INFO     | [payload] validate_pre thread has finished
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:28,020 | INFO     | [data] copytool_out thread has finished
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:30,579 | INFO     | [data] queue_monitor thread has finished
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:30,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139888802322240)>', '<ExcThread(monitor, started 139888074675968)>']
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:31,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:31,599 | INFO     | [monitor] control thread has ended
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,901 | INFO     | all workflow threads have been joined
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,901 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,901 | INFO     | traces error code: 0
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,901 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,955 [wrapper] ==== pilot stdout END ====
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,958 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,962 [wrapper] pilotpid: 5976
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:35,965 [wrapper] Pilot exit status: 0
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:36,046 [wrapper] pandaids: 6666807550
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:36,066 [wrapper] cleanup supervisor_pilot 24074 5977
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:36,069 [wrapper] Test setup, not cleaning
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:36,074 [wrapper] apfmon messages muted
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:36,077 [wrapper] ==== wrapper stdout END ====
2025-06-04 11:44:58 (22144): Guest Log: 2025-06-04 09:44:36,080 [wrapper] ==== wrapper stderr END ====
2025-06-04 11:44:58 (22144): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 11:44:58 (22144): Guest Log:     "exeErrorCode": 0,
2025-06-04 11:44:58 (22144): Guest Log:     "exeErrorDiag": "",
2025-06-04 11:44:58 (22144): Guest Log:     "pilotErrorCode": 0,
2025-06-04 11:44:58 (22144): Guest Log:     "pilotErrorDiag": "",
2025-06-04 11:44:58 (22144): Guest Log:  *** Listing of results directory ***
2025-06-04 11:44:58 (22144): Guest Log: total 195032
2025-06-04 11:44:58 (22144): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 06:47 pilot3.tar.gz
2025-06-04 11:44:58 (22144): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 07:23 queuedata.json
2025-06-04 11:44:58 (22144): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 07:23 runpilot2-wrapper.sh
2025-06-04 11:44:58 (22144): Guest Log: -rwxr-xr-x. 1 atlas atlas      9242 Jun  4 07:30 init_data.xml
2025-06-04 11:44:58 (22144): Guest Log: -rwxr-xr-x. 1 atlas atlas    508881 Jun  4 07:30 input.tar.gz
2025-06-04 11:44:58 (22144): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 07:30 start_atlas.sh
2025-06-04 11:44:58 (22144): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 07:30 EVNT.44871834._002521.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 11:44:58 (22144): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  4 07:30 pandaJob.out
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas    986745 Jun  4 07:31 agis_schedconf.cvmfs.json
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 07:31 agis_ddmendpoints.agis.ALL.json
2025-06-04 11:44:58 (22144): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 07:31 pilot3
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas        97 Jun  4 09:43 pilot_heartbeat.json
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas 194386155 Jun  4 09:43 HITS.44871837._063934.pool.root.1
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas      1024 Jun  4 09:44 memory_monitor_summary.json
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas    317221 Jun  4 09:44 log.44871837._063934.job.log.tgz.1
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas      7708 Jun  4 09:44 heartbeat.json
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas      4599 Jun  4 09:44 pilotlog.txt
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas    465091 Jun  4 09:44 log.44871837._063934.job.log.1
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 09:44 output.list
2025-06-04 11:44:58 (22144): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 09:44 runtime_log
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas    798720 Jun  4 09:44 result.tar.gz
2025-06-04 11:44:58 (22144): Guest Log: -rw-r--r--. 1 atlas atlas      8586 Jun  4 09:44 runtime_log.err
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas       650 Jun  4 09:44 lQiKDmvp3d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVpYKDmxGUK4n.diag
2025-06-04 11:44:58 (22144): Guest Log: Looking for outputfile HITS.44871837._063934.pool.root.1
2025-06-04 11:44:58 (22144): Guest Log: HITS file was successfully produced
2025-06-04 11:44:58 (22144): Guest Log: -rw-------. 1 atlas atlas 194386155 Jun  4 09:43 /home/atlas/RunAtlas/HITS.44871837._063934.pool.root.1
2025-06-04 11:44:59 (22144): Guest Log: Successfully finished the ATLAS job!
2025-06-04 11:44:59 (22144): Guest Log: Copying the results back to the shared directory!
2025-06-04 11:44:59 (22144): Guest Log:  *** Contents of shared directory: ***
2025-06-04 11:44:59 (22144): Guest Log: total 411700
2025-06-04 11:44:59 (22144): Guest Log: -rwxrwxrwx. 1 root root 225852424 Jun  4 07:29 ATLAS.root_0
2025-06-04 11:44:59 (22144): Guest Log: -rwxrwxrwx. 1 root root 194386155 Jun  4  2025 HITS.pool.root.1
2025-06-04 11:44:59 (22144): Guest Log: -rwxrwxrwx. 1 root root      9242 Jun  4 07:29 init_data.xml
2025-06-04 11:44:59 (22144): Guest Log: -rwxrwxrwx. 1 root root    508881 Jun  4 02:36 input.tar.gz
2025-06-04 11:44:59 (22144): Guest Log: -rwxrwxrwx. 1 root root    798720 Jun  4  2025 result.tar.gz
2025-06-04 11:44:59 (22144): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 02:36 start_atlas.sh
2025-06-04 11:44:59 (22144): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 11:44:59 (22144): VM Completion File Detected.
2025-06-04 11:44:59 (22144): Powering off VM.
2025-06-04 11:45:00 (22144): Successfully stopped VM.
2025-06-04 11:45:00 (22144): Deregistering VM. (boinc_2464b36f58cb41c0, slot#5)
2025-06-04 11:45:00 (22144): Removing network bandwidth throttle group from VM.
2025-06-04 11:45:00 (22144): Removing VM from VirtualBox.
11:45:05 (22144): called boinc_finish(0)

</stderr_txt>
]]>

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