Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:35:51 (1776655): wrapper (7.7.26015): starting
22:35:51 (1776655): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 22:35:51] Arguments: --nthreads 12
[2025-06-03 22:35:51] Threads: 12
[2025-06-03 22:35:51] Checking for CVMFS
[2025-06-03 22:35:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:35:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:35:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:35:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:35:52] 2.12.6.0 706982 38409 283188 146765 3 68 20026981 25181184 17169 16776704 3 194883026 99.563 222891489 24659 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 22:35:52] CVMFS is ok
[2025-06-03 22:35:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:35:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:35:52] Further information can be found at the LHC@home message board.
[2025-06-03 22:35:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:35:52] Checking for apptainer binary...
[2025-06-03 22:35:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:35:52] Running /usr/bin/apptainer --version
[2025-06-03 22:35:52] apptainer version 1.4.1-1.el9
[2025-06-03 22:35:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:35:52] c-16-34.aglt2.org
[2025-06-03 22:35:52] apptainer works
[2025-06-03 22:35:52] Set ATHENA_PROC_NUMBER=12
[2025-06-03 22:35:52] Set ATHENA_CORE_NUMBER=12
[2025-06-03 22:35:52] Starting ATLAS job with PandaID=6678150197
[2025-06-03 22:35:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 00:41:05]  *** The last 200 lines of the pilot log: ***
[2025-06-04 00:41:05] 2025-06-04 04:40:50,593 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678150197/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,593 | INFO     | extracted standard info from prmon json
[2025-06-04 00:41:05] 2025-06-04 04:40:50,593 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 00:41:05] 2025-06-04 04:40:50,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 00:41:05] 2025-06-04 04:40:50,594 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 00:41:05] 2025-06-04 04:40:50,594 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 00:41:05] 2025-06-04 04:40:50,595 | INFO     | fitting pss+swap vs Time
[2025-06-04 00:41:05] 2025-06-04 04:40:50,596 | INFO     | sum of square deviations: 577006336.0650395
[2025-06-04 00:41:05] 2025-06-04 04:40:50,596 | INFO     | sum of deviations: 14012542908.878057
[2025-06-04 00:41:05] 2025-06-04 04:40:50,596 | INFO     | mean x: 1749008316.1544716
[2025-06-04 00:41:05] 2025-06-04 04:40:50,596 | INFO     | mean y: 2322473.5853658537
[2025-06-04 00:41:05] 2025-06-04 04:40:50,596 | INFO     | -- intersect: -42472174852.10184
[2025-06-04 00:41:05] 2025-06-04 04:40:50,597 | INFO     | intersect: -42472174852.10184
[2025-06-04 00:41:05] 2025-06-04 04:40:50,597 | INFO     | chi2: 4.519088411314692
[2025-06-04 00:41:05] 2025-06-04 04:40:50,597 | INFO     | sum of square deviations: 509466678.4406776
[2025-06-04 00:41:05] 2025-06-04 04:40:50,597 | INFO     | sum of deviations: 22107442741.983067
[2025-06-04 00:41:05] 2025-06-04 04:40:50,597 | INFO     | mean x: 1749008163.661017
[2025-06-04 00:41:05] 2025-06-04 04:40:50,597 | INFO     | mean y: 2340205.474576271
[2025-06-04 00:41:05] 2025-06-04 04:40:50,597 | INFO     | -- intersect: -75892903722.43457
[2025-06-04 00:41:05] 2025-06-04 04:40:50,598 | INFO     | intersect: -75892903722.43457
[2025-06-04 00:41:05] 2025-06-04 04:40:50,598 | INFO     | chi2: 3.8783524661590936
[2025-06-04 00:41:05] 2025-06-04 04:40:50,598 | INFO     | current chi2=3.8783524661590936 (change=14.178433498918766 %)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,598 | INFO     | right removable region: 117
[2025-06-04 00:41:05] 2025-06-04 04:40:50,598 | INFO     | sum of square deviations: 509455088.4406776
[2025-06-04 00:41:05] 2025-06-04 04:40:50,598 | INFO     | sum of deviations: -12889262947.677963
[2025-06-04 00:41:05] 2025-06-04 04:40:50,599 | INFO     | mean x: 1749008468.661017
[2025-06-04 00:41:05] 2025-06-04 04:40:50,599 | INFO     | mean y: 2382849.9830508474
[2025-06-04 00:41:05] 2025-06-04 04:40:50,599 | INFO     | -- intersect: 44252466050.2266
[2025-06-04 00:41:05] 2025-06-04 04:40:50,599 | INFO     | intersect: 44252466050.2266
[2025-06-04 00:41:05] 2025-06-04 04:40:50,599 | INFO     | chi2: 2.021433600220163
[2025-06-04 00:41:05] 2025-06-04 04:40:50,599 | INFO     | current chi2=2.021433600220163 (change=55.26899639407391 %)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,599 | INFO     | sum of square deviations: 447392315.8053092
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | sum of deviations: -29819167714.68141
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | mean x: 1749008621.1681416
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | mean y: 2424328.0884955754
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | -- intersect: 116575685795.843
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | intersect: 116575685795.843
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | chi2: 0.9935837888353372
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | current chi2=0.9935837888353372 (change=50.84756735382643 %)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,600 | INFO     | sum of square deviations: 390585455.6574077
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | sum of deviations: -29958368466.018513
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | mean x: 1749008773.675926
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | mean y: 2424419.685185185
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | -- intersect: 134153475190.10016
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | intersect: 134153475190.10016
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | chi2: 0.9082371231784674
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | current chi2=0.9082371231784674 (change=8.589780410659854 %)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | left removable region: 30
[2025-06-04 00:41:05] 2025-06-04 04:40:50,601 | INFO     | sum of square deviations: 204162499.0574714
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | sum of deviations: -7669230234.356322
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | mean x: 1749009048.183908
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | mean y: 2400835.459770115
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | -- intersect: 65702777419.892685
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | intersect: 65702777419.892685
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | chi2: 0.15294069372799163
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | -- intersect: 65702777419.892685
[2025-06-04 00:41:05] 2025-06-04 04:40:50,602 | INFO     | current memory leak: -37.56 B/s (using 87 data points, chi2=0.15)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | ..............................
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . Timing measurements:
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . get job = 0 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . initial setup = 3 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . payload setup = 8 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . stage-in = 0 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . payload execution = 7449 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . stage-out = 0 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | . log creation = 0 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,603 | INFO     | ..............................
[2025-06-04 00:41:05] 2025-06-04 04:40:50,711 | INFO     | 
[2025-06-04 00:41:05] 2025-06-04 04:40:50,711 | INFO     | job summary report
[2025-06-04 00:41:05] 2025-06-04 04:40:50,711 | INFO     | --------------------------------------------------
[2025-06-04 00:41:05] 2025-06-04 04:40:50,711 | INFO     | PanDA job id: 6678150197
[2025-06-04 00:41:05] 2025-06-04 04:40:50,712 | INFO     | task id: 45006595
[2025-06-04 00:41:05] 2025-06-04 04:40:50,712 | INFO     | errors: (none)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,712 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 00:41:05] 2025-06-04 04:40:50,712 | INFO     | pilot state: finished 
[2025-06-04 00:41:05] 2025-06-04 04:40:50,712 | INFO     | transexitcode: 0
[2025-06-04 00:41:05] 2025-06-04 04:40:50,712 | INFO     | exeerrorcode: 0
[2025-06-04 00:41:05] 2025-06-04 04:40:50,712 | INFO     | exeerrordiag: 
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | exitcode: 0
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | exitmsg: OK
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | cpuconsumptiontime: 47481 s
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | nevents: 400
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | neventsw: 0
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | pid: 1786914
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | pgrp: 1786914
[2025-06-04 00:41:05] 2025-06-04 04:40:50,713 | INFO     | corecount: 12
[2025-06-04 00:41:05] 2025-06-04 04:40:50,714 | INFO     | event service: False
[2025-06-04 00:41:05] 2025-06-04 04:40:50,714 | INFO     | sizes: {0: 2405070, 1: 2405212, 6: 2405418, 11: 2405446, 7461: 2432778, 7462: 2441719, 7464: 2441903, 7469: 2442073}
[2025-06-04 00:41:05] 2025-06-04 04:40:50,714 | INFO     | --------------------------------------------------
[2025-06-04 00:41:05] 2025-06-04 04:40:50,714 | INFO     | 
[2025-06-04 00:41:05] 2025-06-04 04:40:50,714 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 00:41:05] 2025-06-04 04:40:50,733 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,733 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | job 6678150197 has completed (purged errors)
[2025-06-04 00:41:05] 2025-06-04 04:40:50,735 | INFO     | overall cleanup function is called
[2025-06-04 00:41:05] 2025-06-04 04:40:51,742 | INFO     | --- collectZombieJob: --- 10, [1786914]
[2025-06-04 00:41:05] 2025-06-04 04:40:51,743 | INFO     | zombie collector waiting for pid 1786914
[2025-06-04 00:41:05] 2025-06-04 04:40:51,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 00:41:05] 2025-06-04 04:40:51,743 | INFO     | collected zombie processes
[2025-06-04 00:41:05] 2025-06-04 04:40:51,743 | INFO     | will attempt to kill all subprocesses of pid=1786914
[2025-06-04 00:41:05] 2025-06-04 04:40:52,228 | INFO     | process IDs to be killed: [1786914] (in reverse order)
[2025-06-04 00:41:05] 2025-06-04 04:40:52,353 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 00:41:05] 2025-06-04 04:40:52,354 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 00:41:05] 2025-06-04 04:40:52,374 | INFO     | did not find any defunct processes belonging to 1786914
[2025-06-04 00:41:05] 2025-06-04 04:40:52,394 | INFO     | did not find any defunct processes belonging to 1786914
[2025-06-04 00:41:05] 2025-06-04 04:40:52,395 | INFO     | ready for new job
[2025-06-04 00:41:05] 2025-06-04 04:40:52,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 00:41:05] 2025-06-04 04:40:52,397 | INFO     | **************************************
[2025-06-04 00:41:05] 2025-06-04 04:40:52,397 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 00:41:05] 2025-06-04 04:40:52,397 | INFO     | **************************************
[2025-06-04 00:41:05] 2025-06-04 04:40:52,397 | INFO     | 
[2025-06-04 00:41:05] 2025-06-04 04:40:52,411 | INFO     | architecture information:
[2025-06-04 00:41:05] 2025-06-04 04:40:52,411 | INFO     | executing command: cat /etc/os-release
[2025-06-04 00:41:05] 2025-06-04 04:40:52,424 | INFO     | cat /etc/os-release:
[2025-06-04 00:41:05] NAME="CentOS Linux"
[2025-06-04 00:41:05] VERSION="7 (Core)"
[2025-06-04 00:41:05] ID="centos"
[2025-06-04 00:41:05] ID_LIKE="rhel fedora"
[2025-06-04 00:41:05] VERSION_ID="7"
[2025-06-04 00:41:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 00:41:05] ANSI_COLOR="0;31"
[2025-06-04 00:41:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 00:41:05] HOME_URL="https://www.centos.org/"
[2025-06-04 00:41:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 00:41:05] 
[2025-06-04 00:41:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 00:41:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 00:41:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 00:41:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 00:41:05] 
[2025-06-04 00:41:05] 2025-06-04 04:40:52,425 | INFO     | **************************************
[2025-06-04 00:41:05] 2025-06-04 04:40:52,928 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 00:41:05] 2025-06-04 04:40:52,947 | INFO     | sufficient remaining disk space (64585990144 B)
[2025-06-04 00:41:05] 2025-06-04 04:40:52,947 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 00:41:05] 2025-06-04 04:40:52,947 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 00:41:05] 2025-06-04 04:40:52,948 | INFO     | update_server=False
[2025-06-04 00:41:05] 2025-06-04 04:40:52,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 00:41:05] 2025-06-04 04:40:52,948 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 00:41:05] 2025-06-04 04:40:52,948 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 00:41:05] 2025-06-04 04:40:52,948 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 00:41:05] 2025-06-04 04:40:52,948 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 00:41:05] 2025-06-04 04:40:52,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:41:05] 2025-06-04 04:40:52,962 | INFO     | aborting loop
[2025-06-04 00:41:05] 2025-06-04 04:40:53,003 | INFO     | all job control threads have been joined
[2025-06-04 00:41:05] 2025-06-04 04:40:53,054 | INFO     | all payload control threads have been joined
[2025-06-04 00:41:05] 2025-06-04 04:40:53,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 00:41:05] 2025-06-04 04:40:53,953 | INFO     | [job] retrieve thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:53,967 | INFO     | [job] job monitor thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,001 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,008 | INFO     | [job] control thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,039 | INFO     | all data control threads have been joined
[2025-06-04 00:41:05] 2025-06-04 04:40:54,059 | INFO     | [payload] control thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,361 | INFO     | [payload] validate_post thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,376 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,389 | INFO     | [job] validate thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,928 | INFO     | [payload] failed_post thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:54,999 | INFO     | [data] copytool_in thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:55,044 | INFO     | [data] control thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:55,047 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:55,389 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:55,568 | INFO     | [data] copytool_out thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:55,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 00:41:05] 2025-06-04 04:40:55,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 00:41:05] 2025-06-04 04:40:56,731 | INFO     | [job] queue monitor thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:40:59,772 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 00:41:05] 2025-06-04 04:41:00,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140541003429696)>', '<ExcThread(monitor, started 140540515444480)>']
[2025-06-04 00:41:05] 2025-06-04 04:41:00,989 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 00:41:05] 2025-06-04 04:41:00,989 | INFO     | [monitor] control thread has ended
[2025-06-04 00:41:05] 2025-06-04 04:41:05,350 | INFO     | all workflow threads have been joined
[2025-06-04 00:41:05] 2025-06-04 04:41:05,351 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 00:41:05] 2025-06-04 04:41:05,351 | INFO     | traces error code: 0
[2025-06-04 00:41:05] 2025-06-04 04:41:05,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 00:41:05] 2025-06-04 04:41:05,526 [wrapper] ==== pilot stdout END ====
[2025-06-04 00:41:05] 2025-06-04 04:41:05,531 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 00:41:05] 2025-06-04 04:41:05,534 [wrapper] pilotpid: 1780322
[2025-06-04 00:41:05] 2025-06-04 04:41:05,537 [wrapper] Pilot exit status: 0
[2025-06-04 00:41:05] 2025-06-04 04:41:05,549 [wrapper] pandaids: 6678150197
[2025-06-04 00:41:05] 2025-06-04 04:41:05,637 [wrapper] cleanup supervisor_pilot 2545344 1780323
[2025-06-04 00:41:05] 2025-06-04 04:41:05,640 [wrapper] Test setup, not cleaning
[2025-06-04 00:41:05] 2025-06-04 04:41:05,644 [wrapper] apfmon messages muted
[2025-06-04 00:41:05] 2025-06-04 04:41:05,647 [wrapper] ==== wrapper stdout END ====
[2025-06-04 00:41:05] 2025-06-04 04:41:05,650 [wrapper] ==== wrapper stderr END ====
[2025-06-04 00:41:05]  *** Error codes and diagnostics ***
[2025-06-04 00:41:05]     "exeErrorCode": 0,
[2025-06-04 00:41:05]     "exeErrorDiag": "",
[2025-06-04 00:41:05]     "pilotErrorCode": 0,
[2025-06-04 00:41:05]     "pilotErrorDiag": "",
[2025-06-04 00:41:05]  *** Listing of results directory ***
[2025-06-04 00:41:05] total 391320
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 17:57 pilot3.tar.gz
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 18:00 queuedata.json
[2025-06-04 00:41:05] -rwx------. 1 boincer umatlas     37140 Jun  3 18:00 runpilot2-wrapper.sh
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas       100 Jun  3 22:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 00:41:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 22:35 run_atlas
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas       105 Jun  3 22:35 job.xml
[2025-06-04 00:41:05] -rw-r--r--. 2 boincer umatlas 215077866 Jun  3 22:35 EVNT.45006593._001872.pool.root.1
[2025-06-04 00:41:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:35 start_atlas.sh
[2025-06-04 00:41:05] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 22:35 shared
[2025-06-04 00:41:05] -rw-r--r--. 2 boincer umatlas    508874 Jun  3 22:35 input.tar.gz
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas         0 Jun  3 22:35 boinc_lockfile
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 22:35 pandaJob.out
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas    986077 Jun  3 22:36 agis_schedconf.cvmfs.json
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas   1603667 Jun  3 22:36 agis_ddmendpoints.agis.ALL.json
[2025-06-04 00:41:05] drwx------. 4 boincer umatlas      4096 Jun  3 22:36 pilot3
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas      6612 Jun  4 00:36 init_data.xml
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas 179688780 Jun  4 00:40 HITS.45006595._046696.pool.root.1
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas       530 Jun  4 00:40 boinc_task_state.xml
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas        95 Jun  4 00:40 pilot_heartbeat.json
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas      1038 Jun  4 00:40 memory_monitor_summary.json
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas    391960 Jun  4 00:40 log.45006595._046696.job.log.tgz.1
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas      7717 Jun  4 00:40 heartbeat.json
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas      4476 Jun  4 00:41 pilotlog.txt
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas        27 Jun  4 00:41 wrapper_checkpoint.txt
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas    659846 Jun  4 00:41 log.45006595._046696.job.log.1
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas       357 Jun  4 00:41 output.list
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas       620 Jun  4 00:41 runtime_log
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas   1075200 Jun  4 00:41 result.tar.gz
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas       652 Jun  4 00:41 7UMMDmVrog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmX6ZKDmweljon.diag
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas      8656 Jun  4 00:41 runtime_log.err
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 00:41 boinc_mmap_file
[2025-06-04 00:41:05] -rw-r--r--. 1 boincer umatlas     20941 Jun  4 00:41 stderr.txt
[2025-06-04 00:41:05] HITS file was successfully produced:
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas 179688780 Jun  4 00:40 shared/HITS.pool.root.1
[2025-06-04 00:41:05]  *** Contents of shared directory: ***
[2025-06-04 00:41:05] total 387092
[2025-06-04 00:41:05] -rw-r--r--. 2 boincer umatlas 215077866 Jun  3 22:35 ATLAS.root_0
[2025-06-04 00:41:05] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:35 start_atlas.sh
[2025-06-04 00:41:05] -rw-r--r--. 2 boincer umatlas    508874 Jun  3 22:35 input.tar.gz
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas 179688780 Jun  4 00:40 HITS.pool.root.1
[2025-06-04 00:41:05] -rw-------. 1 boincer umatlas   1075200 Jun  4 00:41 result.tar.gz
00:41:07 (1776655): run_atlas exited; CPU time 47842.412694
00:41:07 (1776655): called boinc_finish(0)

</stderr_txt>
]]>

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