Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:20:20 (18018): wrapper (7.7.26015): starting
11:20:20 (18018): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:20:20] Arguments: --nthreads 8
[2025-06-04 11:20:20] Threads: 8
[2025-06-04 11:20:20] Checking for CVMFS
[2025-06-04 11:20:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:20:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:20:21] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:20:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:20:22] 2.11.2.0 25395 33039 95100 146773 0 60 20988156 25165824 3521 130560 0 17629730 99.778 19607748 2204 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 11:20:22] CVMFS is ok
[2025-06-04 11:20:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:20:22] Checking for apptainer binary...
[2025-06-04 11:20:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:20:22] Running /usr/bin/apptainer --version
[2025-06-04 11:20:22] apptainer version 1.3.2-1.el7
[2025-06-04 11:20:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:20:36] cg-vwn454.simple-grid.lan
[2025-06-04 11:20:36] apptainer works
[2025-06-04 11:20:36] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:20:36] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:20:36] Starting ATLAS job with PandaID=6666763480
[2025-06-04 11:20:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:34:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:34:12] 2025-06-04 14:33:52,839 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:34:12] 2025-06-04 14:33:52,839 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:34:12] 2025-06-04 14:33:52,839 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:34:12] 2025-06-04 14:33:52,840 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:34:12] 2025-06-04 14:33:52,845 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:34:12] 2025-06-04 14:33:52,846 | INFO     | sum of square deviations: 8123493708.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,849 | INFO     | sum of deviations: 75992390411.99997
[2025-06-04 16:34:12] 2025-06-04 14:33:52,849 | INFO     | mean x: 1749038552.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,849 | INFO     | mean y: 2490537.8484848486
[2025-06-04 16:34:12] 2025-06-04 14:33:52,849 | INFO     | -- intersect: -16359142186.545706
[2025-06-04 16:34:12] 2025-06-04 14:33:52,849 | INFO     | intersect: -16359142186.545706
[2025-06-04 16:34:12] 2025-06-04 14:33:52,850 | INFO     | chi2: 6.35896636674837
[2025-06-04 16:34:12] 2025-06-04 14:33:52,850 | INFO     | sum of square deviations: 7720081493.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,853 | INFO     | sum of deviations: 74531303833.00002
[2025-06-04 16:34:12] 2025-06-04 14:33:52,853 | INFO     | mean x: 1749038399.5
[2025-06-04 16:34:12] 2025-06-04 14:33:52,853 | INFO     | mean y: 2489987.006849315
[2025-06-04 16:34:12] 2025-06-04 14:33:52,853 | INFO     | -- intersect: -16883097618.11334
[2025-06-04 16:34:12] 2025-06-04 14:33:52,853 | INFO     | intersect: -16883097618.11334
[2025-06-04 16:34:12] 2025-06-04 14:33:52,854 | INFO     | chi2: 6.364885698304336
[2025-06-04 16:34:12] 2025-06-04 14:33:52,854 | INFO     | current chi2=6.364885698304336 (change=-0.09308637936692013 %)
[2025-06-04 16:34:12] 2025-06-04 14:33:52,854 | INFO     | right removable region: 291
[2025-06-04 16:34:12] 2025-06-04 14:33:52,854 | INFO     | sum of square deviations: 7720081493.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,857 | INFO     | sum of deviations: -27661086290.99998
[2025-06-04 16:34:12] 2025-06-04 14:33:52,857 | INFO     | mean x: 1749038704.5
[2025-06-04 16:34:12] 2025-06-04 14:33:52,857 | INFO     | mean y: 2529689.97260274
[2025-06-04 16:34:12] 2025-06-04 14:33:52,857 | INFO     | -- intersect: 6269343139.460281
[2025-06-04 16:34:12] 2025-06-04 14:33:52,858 | INFO     | intersect: 6269343139.460281
[2025-06-04 16:34:12] 2025-06-04 14:33:52,858 | INFO     | chi2: 1.6343777702358717
[2025-06-04 16:34:12] 2025-06-04 14:33:52,858 | INFO     | current chi2=1.6343777702358717 (change=74.29805921317362 %)
[2025-06-04 16:34:12] 2025-06-04 14:33:52,859 | INFO     | sum of square deviations: 7330250928.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,861 | INFO     | sum of deviations: -77865690469.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,861 | INFO     | mean x: 1749038857.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,862 | INFO     | mean y: 2549236.700348432
[2025-06-04 16:34:12] 2025-06-04 14:33:52,862 | INFO     | -- intersect: 18581738352.47785
[2025-06-04 16:34:12] 2025-06-04 14:33:52,862 | INFO     | intersect: 18581738352.47785
[2025-06-04 16:34:12] 2025-06-04 14:33:52,862 | INFO     | chi2: 0.2840672554869458
[2025-06-04 16:34:12] 2025-06-04 14:33:52,862 | INFO     | current chi2=0.2840672554869458 (change=82.61924136144184 %)
[2025-06-04 16:34:12] 2025-06-04 14:33:52,863 | INFO     | sum of square deviations: 6953769450.5
[2025-06-04 16:34:12] 2025-06-04 14:33:52,865 | INFO     | sum of deviations: -76098551762.00003
[2025-06-04 16:34:12] 2025-06-04 14:33:52,865 | INFO     | mean x: 1749039009.5
[2025-06-04 16:34:12] 2025-06-04 14:33:52,866 | INFO     | mean y: 2548498.510638298
[2025-06-04 16:34:12] 2025-06-04 14:33:52,866 | INFO     | -- intersect: 19143150807.17975
[2025-06-04 16:34:12] 2025-06-04 14:33:52,866 | INFO     | intersect: 19143150807.17975
[2025-06-04 16:34:12] 2025-06-04 14:33:52,866 | INFO     | chi2: 0.2670998244382637
[2025-06-04 16:34:12] 2025-06-04 14:33:52,866 | INFO     | current chi2=0.2670998244382637 (change=5.973033047964877 %)
[2025-06-04 16:34:12] 2025-06-04 14:33:52,866 | INFO     | left removable region: 30
[2025-06-04 16:34:12] 2025-06-04 14:33:52,867 | INFO     | sum of square deviations: 5513070810.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,869 | INFO     | sum of deviations: -48966155094.00001
[2025-06-04 16:34:12] 2025-06-04 14:33:52,869 | INFO     | mean x: 1749039284.0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,869 | INFO     | mean y: 2537340.099616858
[2025-06-04 16:34:12] 2025-06-04 14:33:52,869 | INFO     | -- intersect: 15537206093.21921
[2025-06-04 16:34:12] 2025-06-04 14:33:52,869 | INFO     | intersect: 15537206093.21921
[2025-06-04 16:34:12] 2025-06-04 14:33:52,870 | INFO     | chi2: 0.2292718642226444
[2025-06-04 16:34:12] 2025-06-04 14:33:52,870 | INFO     | -- intersect: 15537206093.21921
[2025-06-04 16:34:12] 2025-06-04 14:33:52,870 | INFO     | current memory leak: -8.88 B/s (using 261 data points, chi2=0.23)
[2025-06-04 16:34:12] 2025-06-04 14:33:52,871 | INFO     | ..............................
[2025-06-04 16:34:12] 2025-06-04 14:33:52,871 | INFO     | . Timing measurements:
[2025-06-04 16:34:12] 2025-06-04 14:33:52,871 | INFO     | . get job = 0 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,871 | INFO     | . initial setup = 8 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,871 | INFO     | . payload setup = 152 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,871 | INFO     | . stage-in = 0 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,871 | INFO     | . payload execution = 18230 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,872 | INFO     | . stage-out = 1 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,872 | INFO     | . log creation = 0 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,872 | INFO     | ..............................
[2025-06-04 16:34:12] 2025-06-04 14:33:52,993 | INFO     | 
[2025-06-04 16:34:12] 2025-06-04 14:33:52,993 | INFO     | job summary report
[2025-06-04 16:34:12] 2025-06-04 14:33:52,993 | INFO     | --------------------------------------------------
[2025-06-04 16:34:12] 2025-06-04 14:33:52,993 | INFO     | PanDA job id: 6666763480
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | task id: 44871837
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | errors: (none)
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | pilot state: finished 
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | transexitcode: 0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | exeerrorcode: 0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | exeerrordiag: 
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | exitcode: 0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | exitmsg: OK
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | cpuconsumptiontime: 68785 s
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | nevents: 400
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | neventsw: 0
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | pid: 31739
[2025-06-04 16:34:12] 2025-06-04 14:33:52,994 | INFO     | pgrp: 31739
[2025-06-04 16:34:12] 2025-06-04 14:33:52,995 | INFO     | corecount: 8
[2025-06-04 16:34:12] 2025-06-04 14:33:52,995 | INFO     | event service: False
[2025-06-04 16:34:12] 2025-06-04 14:33:52,995 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 23: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 66: 2405558, 76: 2405586, 87: 2405642, 88: 2405876, 98: 2406184, 1
[2025-06-04 16:34:12] 2025-06-04 14:33:52,995 | INFO     | --------------------------------------------------
[2025-06-04 16:34:12] 2025-06-04 14:33:52,995 | INFO     | 
[2025-06-04 16:34:12] 2025-06-04 14:33:52,995 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 16:34:12] 2025-06-04 14:33:53,020 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,021 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,022 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:34:12] 2025-06-04 14:33:53,023 | INFO     | job 6666763480 has completed (purged errors)
[2025-06-04 16:34:12] 2025-06-04 14:33:53,023 | INFO     | overall cleanup function is called
[2025-06-04 16:34:12] 2025-06-04 14:33:54,032 | INFO     | --- collectZombieJob: --- 10, [31739]
[2025-06-04 16:34:12] 2025-06-04 14:33:54,032 | INFO     | zombie collector waiting for pid 31739
[2025-06-04 16:34:12] 2025-06-04 14:33:54,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:34:12] 2025-06-04 14:33:54,032 | INFO     | collected zombie processes
[2025-06-04 16:34:12] 2025-06-04 14:33:54,032 | INFO     | will attempt to kill all subprocesses of pid=31739
[2025-06-04 16:34:12] 2025-06-04 14:33:54,130 | INFO     | process IDs to be killed: [31739] (in reverse order)
[2025-06-04 16:34:12] 2025-06-04 14:33:54,291 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:34:12] 2025-06-04 14:33:54,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:34:12] 2025-06-04 14:33:54,295 | INFO     | did not find any defunct processes belonging to 31739
[2025-06-04 16:34:12] 2025-06-04 14:33:54,298 | INFO     | did not find any defunct processes belonging to 31739
[2025-06-04 16:34:12] 2025-06-04 14:33:54,298 | INFO     | ready for new job
[2025-06-04 16:34:12] 2025-06-04 14:33:54,298 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:34:12] 2025-06-04 14:33:54,300 | INFO     | **************************************
[2025-06-04 16:34:12] 2025-06-04 14:33:54,301 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:34:12] 2025-06-04 14:33:54,301 | INFO     | **************************************
[2025-06-04 16:34:12] 2025-06-04 14:33:54,301 | INFO     | 
[2025-06-04 16:34:12] 2025-06-04 14:33:54,301 | INFO     | pilot is running in a VM
[2025-06-04 16:34:12] 2025-06-04 14:33:54,301 | INFO     | architecture information:
[2025-06-04 16:34:12] 2025-06-04 14:33:54,302 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:34:12] 2025-06-04 14:33:54,330 | INFO     | cat /etc/os-release:
[2025-06-04 16:34:12] NAME="CentOS Linux"
[2025-06-04 16:34:12] VERSION="7 (Core)"
[2025-06-04 16:34:12] ID="centos"
[2025-06-04 16:34:12] ID_LIKE="rhel fedora"
[2025-06-04 16:34:12] VERSION_ID="7"
[2025-06-04 16:34:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:34:12] ANSI_COLOR="0;31"
[2025-06-04 16:34:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:34:12] HOME_URL="https://www.centos.org/"
[2025-06-04 16:34:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:34:12] 
[2025-06-04 16:34:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:34:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:34:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:34:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:34:12] 
[2025-06-04 16:34:12] 2025-06-04 14:33:54,331 | INFO     | **************************************
[2025-06-04 16:34:12] 2025-06-04 14:33:54,834 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 16:34:12] 2025-06-04 14:33:54,857 | INFO     | sufficient remaining disk space (496930652160 B)
[2025-06-04 16:34:12] 2025-06-04 14:33:54,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:34:12] 2025-06-04 14:33:54,858 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:34:12] 2025-06-04 14:33:54,858 | INFO     | update_server=False
[2025-06-04 16:34:12] 2025-06-04 14:33:54,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:34:12] 2025-06-04 14:33:54,858 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 16:34:12] 2025-06-04 14:33:54,859 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:34:12] 2025-06-04 14:33:54,859 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:34:12] 2025-06-04 14:33:54,859 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:34:12] 2025-06-04 14:33:54,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:34:12] 2025-06-04 14:33:55,127 | INFO     | all job control threads have been joined
[2025-06-04 16:34:12] 2025-06-04 14:33:55,238 | INFO     | all payload control threads have been joined
[2025-06-04 16:34:12] 2025-06-04 14:33:55,518 | INFO     | all data control threads have been joined
[2025-06-04 16:34:12] 2025-06-04 14:33:55,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:34:12] 2025-06-04 14:33:55,535 | INFO     | aborting loop
[2025-06-04 16:34:12] 2025-06-04 14:33:55,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:34:12] 2025-06-04 14:33:55,859 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:55,864 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:55,951 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,134 | INFO     | [job] control thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,164 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,244 | INFO     | [payload] control thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,345 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,450 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,524 | INFO     | [data] control thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,540 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,680 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,902 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:56,934 | INFO     | [job] validate thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:57,579 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:33:58,148 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:34:12] 2025-06-04 14:34:02,156 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:34:05,146 | INFO     | job.realtimelogging is not enabled
[2025-06-04 16:34:12] 2025-06-04 14:34:06,153 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:34:12] 2025-06-04 14:34:07,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140218561156928)>', '<ExcThread(monitor, started 140217998636800)>']
[2025-06-04 16:34:12] 2025-06-04 14:34:07,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:34:12] 2025-06-04 14:34:07,932 | INFO     | [monitor] control thread has ended
[2025-06-04 16:34:12] 2025-06-04 14:34:12,108 | INFO     | all workflow threads have been joined
[2025-06-04 16:34:12] 2025-06-04 14:34:12,108 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:34:12] 2025-06-04 14:34:12,108 | INFO     | traces error code: 0
[2025-06-04 16:34:12] 2025-06-04 14:34:12,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:34:12] 2025-06-04 14:34:12,331 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:34:12] 2025-06-04 14:34:12,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:34:12] 2025-06-04 14:34:12,342 [wrapper] pilotpid: 25138
[2025-06-04 16:34:12] 2025-06-04 14:34:12,353 [wrapper] Pilot exit status: 0
[2025-06-04 16:34:12] 2025-06-04 14:34:12,387 [wrapper] pandaids: 6666763480
[2025-06-04 16:34:12] 2025-06-04 14:34:12,435 [wrapper] cleanup supervisor_pilot 10110 25139
[2025-06-04 16:34:12] 2025-06-04 14:34:12,444 [wrapper] Test setup, not cleaning
[2025-06-04 16:34:12] 2025-06-04 14:34:12,453 [wrapper] apfmon messages muted
[2025-06-04 16:34:12] 2025-06-04 14:34:12,465 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:34:12] 2025-06-04 14:34:12,472 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:34:12]  *** Error codes and diagnostics ***
[2025-06-04 16:34:12]     "exeErrorCode": 0,
[2025-06-04 16:34:12]     "exeErrorDiag": "",
[2025-06-04 16:34:12]     "pilotErrorCode": 0,
[2025-06-04 16:34:12]     "pilotErrorDiag": "",
[2025-06-04 16:34:12]  *** Listing of results directory ***
[2025-06-04 16:34:12] total 422080
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc    495897 May 27 06:09 pilot3.tar.gz
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc      5111 May 27 06:40 queuedata.json
[2025-06-04 16:34:12] -rwx------. 1 boinc boinc     37140 May 27 06:40 runpilot2-wrapper.sh
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc       100 Jun  4 11:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:34:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 11:20 run_atlas
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc       105 Jun  4 11:20 job.xml
[2025-06-04 16:34:12] -rw-r--r--. 2 boinc boinc 224964029 Jun  4 11:20 EVNT.44871834._002458.pool.root.1
[2025-06-04 16:34:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:20 start_atlas.sh
[2025-06-04 16:34:12] drwxrwx--x. 2 boinc boinc        68 Jun  4 11:20 shared
[2025-06-04 16:34:12] -rw-r--r--. 2 boinc boinc    508881 Jun  4 11:20 input.tar.gz
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc      6391 Jun  4 11:20 init_data.xml
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc         0 Jun  4 11:20 boinc_lockfile
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc      2559 Jun  4 11:20 pandaJob.out
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc    986766 Jun  4 11:23 agis_schedconf.cvmfs.json
[2025-06-04 16:34:12] drwx------. 4 boinc boinc      4096 Jun  4 11:24 pilot3
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc 199443330 Jun  4 16:32 HITS.44871837._062299.pool.root.1
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc       531 Jun  4 16:33 boinc_task_state.xml
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc        95 Jun  4 16:33 pilot_heartbeat.json
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc      1018 Jun  4 16:33 memory_monitor_summary.json
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc   1598969 Jun  4 16:33 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc    417301 Jun  4 16:33 log.44871837._062299.job.log.tgz.1
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc      7691 Jun  4 16:33 heartbeat.json
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc      8192 Jun  4 16:34 boinc_mmap_file
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc        28 Jun  4 16:34 wrapper_checkpoint.txt
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc      4611 Jun  4 16:34 pilotlog.txt
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc   1576800 Jun  4 16:34 log.44871837._062299.job.log.1
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc       357 Jun  4 16:34 output.list
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc       620 Jun  4 16:34 runtime_log
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc   2017280 Jun  4 16:34 result.tar.gz
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc      8659 Jun  4 16:34 runtime_log.err
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc       657 Jun  4 16:34 8jkLDmcI1d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpZYKDmHWJ5Fm.diag
[2025-06-04 16:34:12] -rw-r--r--. 1 boinc boinc     20257 Jun  4 16:34 stderr.txt
[2025-06-04 16:34:12] HITS file was successfully produced:
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc 199443330 Jun  4 16:32 shared/HITS.pool.root.1
[2025-06-04 16:34:12]  *** Contents of shared directory: ***
[2025-06-04 16:34:12] total 416952
[2025-06-04 16:34:12] -rw-r--r--. 2 boinc boinc 224964029 Jun  4 11:20 ATLAS.root_0
[2025-06-04 16:34:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:20 start_atlas.sh
[2025-06-04 16:34:12] -rw-r--r--. 2 boinc boinc    508881 Jun  4 11:20 input.tar.gz
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc 199443330 Jun  4 16:32 HITS.pool.root.1
[2025-06-04 16:34:12] -rw-------. 1 boinc boinc   2017280 Jun  4 16:34 result.tar.gz
16:34:14 (18018): run_atlas exited; CPU time 69020.055739
16:34:14 (18018): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN